| 49 |  | namespace oopse { | 
| 50 |  |  | 
| 51 |  |  | 
| 52 | < | SelectionEvaluator::SelectionEvaluator(SimInfo* si) : info(si), finder(info), isLoaded_(false){ | 
| 53 | < |  | 
| 52 | > | SelectionEvaluator::SelectionEvaluator(SimInfo* si) : info(si), nameFinder(info), distanceFinder(info), isLoaded_(false){ | 
| 53 | > | nStuntDouble = info->getNGlobalAtoms() + info->getNRigidBodies(); | 
| 54 |  | } | 
| 55 |  |  | 
| 56 |  | bool SelectionEvaluator::loadScript(const std::string& filename, const std::string& script) { | 
| 102 |  | } | 
| 103 |  |  | 
| 104 |  | bool SelectionEvaluator::loadScriptFileInternal(const  std::string & filename) { | 
| 105 | < | ifstream ifs(filename.c_str()); | 
| 105 | > | std::ifstream ifs(filename.c_str()); | 
| 106 |  | if (!ifs.is_open()) { | 
| 107 |  | return false; | 
| 108 |  | } | 
| 181 |  | case Token::name: | 
| 182 |  | stack.push(nameInstruction(boost::any_cast<std::string>(instruction.value))); | 
| 183 |  | break; | 
| 184 | + | case Token::index: | 
| 185 | + | stack.push(indexInstruction(instruction.value)); | 
| 186 |  | break; | 
| 187 |  | case Token::identifier: | 
| 188 |  | stack.push(lookupValue(boost::any_cast<std::string>(instruction.value))); | 
| 213 |  | float comparisonValue = boost::any_cast<float>(instruction.value); | 
| 214 |  | float propertyValue; | 
| 215 |  | BitSet bs(nStuntDouble); | 
| 216 | + | bs.clearAll(); | 
| 217 |  |  | 
| 218 |  | SimInfo::MoleculeIterator mi; | 
| 219 |  | Molecule* mol; | 
| 280 |  | } | 
| 281 |  |  | 
| 282 |  | void SelectionEvaluator::withinInstruction(const Token& instruction, BitSet& bs){ | 
| 283 | < |  | 
| 283 | > |  | 
| 284 |  | boost::any withinSpec = instruction.value; | 
| 285 | + | float distance; | 
| 286 |  | if (withinSpec.type() == typeid(float)){ | 
| 287 | < | // | 
| 288 | < | return; | 
| 287 | > | distance = boost::any_cast<float>(withinSpec); | 
| 288 | > | } else if (withinSpec.type() == typeid(int)) { | 
| 289 | > | distance = boost::any_cast<int>(withinSpec); | 
| 290 | > | } else { | 
| 291 | > | evalError("casting error in withinInstruction"); | 
| 292 | > | bs.clearAll(); | 
| 293 |  | } | 
| 294 |  |  | 
| 295 | < | evalError("Unrecognized within parameter"); | 
| 295 | > | bs = distanceFinder.find(bs, distance); | 
| 296 |  | } | 
| 297 |  |  | 
| 298 |  | void SelectionEvaluator::define() { | 
| 319 |  | int tok = statement[1].tok; | 
| 320 |  | if (tok == Token::identifier || (tok & Token::predefinedset) == Token::predefinedset) { | 
| 321 |  | std::string variable = boost::any_cast<std::string>(statement[1].value); | 
| 322 | < | variables.insert(std::make_pair(variable, statement)); | 
| 322 | > | variables.insert(VariablesType::value_type(variable, statement)); | 
| 323 |  |  | 
| 324 |  | } else { | 
| 325 |  | evalError("invalid variable name:" + script); | 
| 342 |  |  | 
| 343 |  | BitSet SelectionEvaluator::lookupValue(const std::string& variable){ | 
| 344 |  |  | 
| 345 | + | BitSet bs(nStuntDouble); | 
| 346 |  | std::map<std::string, boost::any>::iterator i = variables.find(variable); | 
| 347 | < |  | 
| 347 | > |  | 
| 348 |  | if (i != variables.end()) { | 
| 349 |  | if (i->second.type() == typeid(BitSet)) { | 
| 350 |  | return boost::any_cast<BitSet>(i->second); | 
| 351 |  | } else if (i->second.type() ==  typeid(std::vector<Token>)){ | 
| 352 | < | BitSet bs = expression(boost::any_cast<std::vector<Token> >(i->second), 2); | 
| 352 | > | bs = expression(boost::any_cast<std::vector<Token> >(i->second), 2); | 
| 353 |  | i->second =  bs; /**@todo fixme */ | 
| 354 |  | return bs; | 
| 355 |  | } | 
| 356 |  | } else { | 
| 357 |  | unrecognizedIdentifier(variable); | 
| 358 |  | } | 
| 359 | + |  | 
| 360 | + | return bs; | 
| 361 |  | } | 
| 362 |  |  | 
| 363 |  | BitSet SelectionEvaluator::nameInstruction(const std::string& name){ | 
| 364 |  |  | 
| 365 | < | return finder.match(name); | 
| 365 | > | return nameFinder.match(name); | 
| 366 |  |  | 
| 367 |  | } | 
| 368 |  |  | 
| 386 |  | BitSet SelectionEvaluator::evaluate() { | 
| 387 |  | BitSet bs(nStuntDouble); | 
| 388 |  | if (isLoaded_) { | 
| 389 | + | pc = 0; | 
| 390 |  | instructionDispatchLoop(bs); | 
| 391 |  | } | 
| 392 |  |  | 
| 393 |  | return bs; | 
| 394 |  | } | 
| 395 | < |  | 
| 395 | > |  | 
| 396 | > | BitSet SelectionEvaluator::indexInstruction(const boost::any& value) { | 
| 397 | > | BitSet bs(nStuntDouble); | 
| 398 | > |  | 
| 399 | > | if (value.type() == typeid(int)) { | 
| 400 | > | int index = boost::any_cast<int>(value); | 
| 401 | > | if (index < 0 || index >= bs.size()) { | 
| 402 | > | invalidIndex(index); | 
| 403 | > | } else { | 
| 404 | > | bs.setBitOn(index); | 
| 405 | > | } | 
| 406 | > | } else if (value.type() == typeid(std::pair<int, int>)) { | 
| 407 | > | std::pair<int, int> indexRange= boost::any_cast<std::pair<int, int> >(value); | 
| 408 | > | assert(indexRange.first <= indexRange.second); | 
| 409 | > | if (indexRange.first < 0 || indexRange.second >= bs.size()) { | 
| 410 | > | invalidIndexRange(indexRange); | 
| 411 | > | }else { | 
| 412 | > | bs.setRangeOn(indexRange.first, indexRange.second); | 
| 413 | > | } | 
| 414 | > | } | 
| 415 | > |  | 
| 416 | > | return bs; | 
| 417 | > | } | 
| 418 | > |  | 
| 419 |  | //BitSet SelectionEvaluator::evaluate(int frameNo) { | 
| 420 |  | // | 
| 421 |  | //} |