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root/OpenMD/trunk/src/selection/SelectionManager.hpp

Comparing trunk/src/selection/SelectionManager.hpp (file contents):
Revision 283 by tim, Thu Feb 3 23:14:05 2005 UTC vs.
Revision 1879 by gezelter, Sun Jun 16 15:15:42 2013 UTC

#	Line 6 | Line 6
6		* redistribute this software in source and binary code form, provided
7		* that the following conditions are met:
8		*
9	<	* 1. Acknowledgement of the program authors must be made in any
10	<	*    publication of scientific results based in part on use of the
11	<	*    program.  An acceptable form of acknowledgement is citation of
12	<	*    the article in which the program was described (Matthew
13	<	*    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14	<	*    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15	<	*    Parallel Simulation Engine for Molecular Dynamics,"
16	<	*    J. Comput. Chem. 26, pp. 252-271 (2005))
17	<	*
18	<	* 2. Redistributions of source code must retain the above copyright
9	>	* 1. Redistributions of source code must retain the above copyright
10		*    notice, this list of conditions and the following disclaimer.
11		*
12	<	* 3. Redistributions in binary form must reproduce the above copyright
12	>	* 2. Redistributions in binary form must reproduce the above copyright
13		*    notice, this list of conditions and the following disclaimer in the
14		*    documentation and/or other materials provided with the
15		*    distribution.
#	Line 37 | Line 28
28		* arising out of the use of or inability to use software, even if the
29		* University of Notre Dame has been advised of the possibility of
30		* such damages.
31	+	*
32	+	* SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your
33	+	* research, please cite the appropriate papers when you publish your
34	+	* work.  Good starting points are:
35	+	*
36	+	* [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
37	+	* [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
38	+	* [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
39	+	* [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010).
40	+	* [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
41		*/
42
43		#ifndef SELECTION_SELECTIONMANAGER_HPP
44		#define SELECTION_SELECTIONMANAGER_HPP
45
46	<	#include "utils/BitSet.hpp"
46	>	#include "utils/OpenMDBitSet.hpp"
47	>	#include "primitives/StuntDouble.hpp"
48	>	namespace OpenMD {
49
50	<	namespace oopse {
50	>	class SimInfo;
51	>	class SelectionManager {
52	>	public:
53	>	SelectionManager(SimInfo* info);
54
55	<	/**
56	<	* @class SelectionManager SelectionManager.hpp "selection/SelectionManager.hpp"
57	<	* @brief
52	<	*/
53	<	class SelectionManager {
54	<	public:
55	<	SelectionManager(int size) {bsSelection_.resize(size); clearSelection;}
56	<
57	<	void addSelection(StuntDouble* sd) {
58	<	bsSelection_.setBitOn(sd->getGlobalIndex());
59	<	}
55	>	void addSelection(StuntDouble* sd) {
56	>	bsSelection_.setBitOn(sd->getGlobalIndex());
57	>	}
58
59	<	void addSelectionSet(const BitSet& bs) {
60	<	bsSelection_ |= bs;
61	<	}
59	>	void addSelectionSet(const OpenMDBitSet& bs) {
60	>	bsSelection_ |= bs;
61	>	}
62
63	<	void setSelection(StuntDouble* sd) {
64	<	bsSelection_.clearAll();
65	<	bsSelection_.setBitOn(sd->getGlobalIndex());
66	<	}
63	>	void setSelection(StuntDouble* sd) {
64	>	bsSelection_.clearAll();
65	>	bsSelection_.setBitOn(sd->getGlobalIndex());
66	>	}
67
68	<	void setSelectionSet(const BitSet& bs) {
69	<	bsSelection_ = bs;
70	<	}
68	>	void setSelectionSet(const OpenMDBitSet& bs) {
69	>	bsSelection_ = bs;
70	>	}
71
72	<	void toggleSelection(StuntDouble* sd) {
73	<	bsSelection_.flip(sd->getGlobalIndex());
74	<	}
72	>	void toggleSelection(StuntDouble* sd) {
73	>	bsSelection_.flip(sd->getGlobalIndex());
74	>	}
75
76	<	void toggleSelection() {
77	<	bsSelection_.flip();
78	<	}
76	>	void toggleSelection() {
77	>	bsSelection_.flip();
78	>	}
79
80	<	void selectAll() {
81	<	bsSelection_.setAll();
82	<	}
80	>	void selectAll() {
81	>	bsSelection_.setAll();
82	>	}
83
84	<	void clearSelection() {
85	<	bsSelection_.clearAll();
86	<	}
84	>	void clearSelection() {
85	>	bsSelection_.clearAll();
86	>	}
87
88	<	void clearSelection(StuntDouble* sd) {
89	<	bsSelection_.setBitOff(sd->getGlobalIndex());
90	<	}
88	>	void clearSelection(StuntDouble* sd) {
89	>	bsSelection_.setBitOff(sd->getGlobalIndex());
90	>	}
91
92	<	bool isSelected(StuntDouble* sd) {
93	<	return bsSelection_[sd->getGlobalIndex()];
94	<	}
92	>	bool isSelected(StuntDouble* sd) {
93	>	return bsSelection_[sd->getGlobalIndex()];
94	>	}
95
96	<	bool isEmpty() {
97	<	return bsSelection_.none();
98	<	}
96	>	bool isEmpty() {
97	>	return bsSelection_.none();
98	>	}
99
100	<	int getSelectionCount() {
101	<	bsSelection_.countBits();
102	<	}
100	>	int getSelectionCount() {
101	>	return bsSelection_.countBits();
102	>	}
103
104	<	BitSet getSelectionSet() {
105	<	return bsSelection_;
106	<	}
104	>	OpenMDBitSet getSelectionSet() {
105	>	return bsSelection_;
106	>	}
107	>
108	>
109	>	StuntDouble* beginSelected(int& i);
110	>	StuntDouble* nextSelected(int& i);
111	>
112	>	StuntDouble* beginUnselected(int& i);
113	>	StuntDouble* nextUnSelected(int& i);
114	>
115	>	SelectionManager& operator&= (const SelectionManager &sman) {
116	>	bsSelection_ &= sman.bsSelection_;
117	>	return *this;
118	>	}
119
120	<	private:
120	>	SelectionManager& operator|= (const SelectionManager &sman) {
121	>	bsSelection_ |= sman.bsSelection_;
122	>	return *this;
123	>	}
124
125	<	BitSet bsSelection_;
126	<	SimInfo* info_;
127	<	};
125	>	SelectionManager& operator^= (const SelectionManager &sman) {
126	>	bsSelection_ ^= sman.bsSelection_;
127	>	return *this;
128	>	}
129
130	+	SelectionManager& operator-= (const SelectionManager &sman) {
131	+	bsSelection_ -= sman.bsSelection_;
132	+	return *this;
133	+	}
134	+
135	+	friend SelectionManager operator| (const SelectionManager& sman1, const SelectionManager& sman2);
136	+	friend SelectionManager operator& (const SelectionManager& sman1, const SelectionManager& sman2);
137	+	friend SelectionManager operator^ (const SelectionManager& sman1, const SelectionManager& sman2);
138	+	friend SelectionManager operator-(const SelectionManager& sman1, const SelectionManager& sman2);
139	+
140	+	private:
141	+	SimInfo* info_;
142	+	OpenMDBitSet bsSelection_;
143	+	std::vector<StuntDouble*> stuntdoubles_;
144	+	};
145	+
146		}
147		#endif

Comparing trunk/src/selection/SelectionManager.hpp (property svn:keywords):
Revision 283 by tim, Thu Feb 3 23:14:05 2005 UTC vs.
Revision 1879 by gezelter, Sun Jun 16 15:15:42 2013 UTC

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