ViewVC Help

View File | Revision Log | Show Annotations | View Changeset | Root Listing

root/OpenMD/trunk/src/selection/SelectionManager.hpp

Comparing trunk/src/selection/SelectionManager.hpp (file contents):
Revision 507 by gezelter, Fri Apr 15 22:04:00 2005 UTC vs.
Revision 1879 by gezelter, Sun Jun 16 15:15:42 2013 UTC

#	Line 6 | Line 6
6		* redistribute this software in source and binary code form, provided
7		* that the following conditions are met:
8		*
9	<	* 1. Acknowledgement of the program authors must be made in any
10	<	*    publication of scientific results based in part on use of the
11	<	*    program.  An acceptable form of acknowledgement is citation of
12	<	*    the article in which the program was described (Matthew
13	<	*    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14	<	*    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15	<	*    Parallel Simulation Engine for Molecular Dynamics,"
16	<	*    J. Comput. Chem. 26, pp. 252-271 (2005))
17	<	*
18	<	* 2. Redistributions of source code must retain the above copyright
9	>	* 1. Redistributions of source code must retain the above copyright
10		*    notice, this list of conditions and the following disclaimer.
11		*
12	<	* 3. Redistributions in binary form must reproduce the above copyright
12	>	* 2. Redistributions in binary form must reproduce the above copyright
13		*    notice, this list of conditions and the following disclaimer in the
14		*    documentation and/or other materials provided with the
15		*    distribution.
#	Line 37 | Line 28
28		* arising out of the use of or inability to use software, even if the
29		* University of Notre Dame has been advised of the possibility of
30		* such damages.
31	+	*
32	+	* SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your
33	+	* research, please cite the appropriate papers when you publish your
34	+	* work.  Good starting points are:
35	+	*
36	+	* [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
37	+	* [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
38	+	* [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
39	+	* [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010).
40	+	* [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
41		*/
42
43		#ifndef SELECTION_SELECTIONMANAGER_HPP
44		#define SELECTION_SELECTIONMANAGER_HPP
45
46	<	#include "utils/BitSet.hpp"
46	>	#include "utils/OpenMDBitSet.hpp"
47		#include "primitives/StuntDouble.hpp"
48	<	namespace oopse {
48	>	namespace OpenMD {
49
50		class SimInfo;
50	–	/**
51	–	* @class SelectionManager SelectionManager.hpp "selection/SelectionManager.hpp"
52	–	* @brief
53	–	*/
51		class SelectionManager {
52		public:
53		SelectionManager(SimInfo* info);
#	Line 59 | Line 56 | namespace oopse {
56		bsSelection_.setBitOn(sd->getGlobalIndex());
57		}
58
59	<	void addSelectionSet(const BitSet& bs) {
59	>	void addSelectionSet(const OpenMDBitSet& bs) {
60		bsSelection_ |= bs;
61		}
62
#	Line 68 | Line 65 | namespace oopse {
65		bsSelection_.setBitOn(sd->getGlobalIndex());
66		}
67
68	<	void setSelectionSet(const BitSet& bs) {
68	>	void setSelectionSet(const OpenMDBitSet& bs) {
69		bsSelection_ = bs;
70		}
71
#	Line 104 | Line 101 | namespace oopse {
101		return bsSelection_.countBits();
102		}
103
104	<	BitSet getSelectionSet() {
104	>	OpenMDBitSet getSelectionSet() {
105		return bsSelection_;
106		}
107
#	Line 142 | Line 139 | namespace oopse {
139
140		private:
141		SimInfo* info_;
142	<	BitSet bsSelection_;
142	>	OpenMDBitSet bsSelection_;
143		std::vector<StuntDouble*> stuntdoubles_;
144		};
145

Comparing trunk/src/selection/SelectionManager.hpp (property svn:keywords):
Revision 507 by gezelter, Fri Apr 15 22:04:00 2005 UTC vs.
Revision 1879 by gezelter, Sun Jun 16 15:15:42 2013 UTC

#	Line 0 | Line 1
1	+	Author Id Revision Date

Diff Legend

–	Removed lines
+	Added lines
<	Changed lines
>	Changed lines