| 6 |  | * redistribute this software in source and binary code form, provided | 
| 7 |  | * that the following conditions are met: | 
| 8 |  | * | 
| 9 | < | * 1. Acknowledgement of the program authors must be made in any | 
| 10 | < | *    publication of scientific results based in part on use of the | 
| 11 | < | *    program.  An acceptable form of acknowledgement is citation of | 
| 12 | < | *    the article in which the program was described (Matthew | 
| 13 | < | *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher | 
| 14 | < | *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented | 
| 15 | < | *    Parallel Simulation Engine for Molecular Dynamics," | 
| 16 | < | *    J. Comput. Chem. 26, pp. 252-271 (2005)) | 
| 17 | < | * | 
| 18 | < | * 2. Redistributions of source code must retain the above copyright | 
| 9 | > | * 1. Redistributions of source code must retain the above copyright | 
| 10 |  | *    notice, this list of conditions and the following disclaimer. | 
| 11 |  | * | 
| 12 | < | * 3. Redistributions in binary form must reproduce the above copyright | 
| 12 | > | * 2. Redistributions in binary form must reproduce the above copyright | 
| 13 |  | *    notice, this list of conditions and the following disclaimer in the | 
| 14 |  | *    documentation and/or other materials provided with the | 
| 15 |  | *    distribution. | 
| 28 |  | * arising out of the use of or inability to use software, even if the | 
| 29 |  | * University of Notre Dame has been advised of the possibility of | 
| 30 |  | * such damages. | 
| 31 | + | * | 
| 32 | + | * SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your | 
| 33 | + | * research, please cite the appropriate papers when you publish your | 
| 34 | + | * work.  Good starting points are: | 
| 35 | + | * | 
| 36 | + | * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). | 
| 37 | + | * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). | 
| 38 | + | * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). | 
| 39 | + | * [4]  Vardeman & Gezelter, in progress (2009). | 
| 40 |  | */ | 
| 41 |  |  | 
| 42 |  | #include <functional> | 
| 43 | + | #include "config.h" | 
| 44 | + | namespace OpenMD { | 
| 45 |  |  | 
| 46 | < | namespace oopse { | 
| 47 | < |  | 
| 48 | < | /** | 
| 49 | < | * copy_if is one of the missing functions in STL. | 
| 50 | < | * copy_if copies elements from the range [first, last) to the range [result, result + (last-first)), | 
| 51 | < | * except that any element for which pred is false is not copied. | 
| 52 | < | */ | 
| 51 | < | template<typename InputIterator, typename OutputIterator, typename Predicate> | 
| 52 | < | OutputIterator copy_if(InputIterator first, InputIterator last, OutputIterator result, Predicate p) { | 
| 46 | > | /** | 
| 47 | > | * copy_if is one of the missing functions in STL. | 
| 48 | > | * copy_if copies elements from the range [first, last) to the range [result, result + (last-first)), | 
| 49 | > | * except that any element for which pred is false is not copied. | 
| 50 | > | */ | 
| 51 | > | template<typename InputIterator, typename OutputIterator, typename Predicate> | 
| 52 | > | OutputIterator copy_if(InputIterator first, InputIterator last, OutputIterator result, Predicate p) { | 
| 53 |  | while (first != last) { | 
| 54 | < | if (p(*first)) { | 
| 55 | < | *result++ = *first; | 
| 56 | < | } | 
| 57 | < | ++first; | 
| 54 | > | if (p(*first)) { | 
| 55 | > | *result++ = *first; | 
| 56 | > | } | 
| 57 | > | ++first; | 
| 58 |  | } | 
| 59 |  |  | 
| 60 |  | return result; | 
| 61 | < | } | 
| 61 | > | } | 
| 62 |  |  | 
| 63 |  |  | 
| 64 |  |  | 
| 65 | < | template<typename T> | 
| 66 | < | struct logical_xor :public std::binary_function<T, T, bool> { | 
| 67 | < | double operator()(T x, T y) { return x ^ y; } | 
| 68 | < | }; | 
| 65 | > | template<typename T> | 
| 66 | > | struct logical_xor :public std::binary_function<T, T, bool> { | 
| 67 | > | RealType operator()(T x, T y) { return x ^ y; } | 
| 68 | > | }; | 
| 69 |  |  | 
| 70 |  | } |