| 1 |  | /********************************************************************** | 
| 2 |  |  | 
| 3 |  | This basic Periodic Table class was originally taken from the data.h | 
| 4 | < | file in OpenBabel. The code has been modified to match the OOPSE coding style. | 
| 4 | > | file in OpenBabel. The code has been modified to match the OpenMD coding style. | 
| 5 |  |  | 
| 6 |  | We have retained the OpenBabel copyright and GPL license on this class: | 
| 7 |  |  | 
| 25 |  | * @file ElementsTable.hpp | 
| 26 |  | * @author gezelter | 
| 27 |  | * @date 12/21/2007 | 
| 28 | – | * @time 11:30am | 
| 28 |  | * @version 1.0 | 
| 29 |  | */ | 
| 30 |  |  | 
| 35 |  | #include <vector> | 
| 36 |  | #include "primitives/Element.hpp" | 
| 37 |  |  | 
| 38 | < | namespace oopse { | 
| 38 | > | namespace OpenMD { | 
| 39 |  |  | 
| 40 |  | /** | 
| 41 | < | * @class ElementsTable.hpp "util/ElementsTable.hpp" | 
| 41 | > | * @class ElementsTable | 
| 42 |  | * @brief Periodic Table of the Elements | 
| 43 |  | * Using element data is a place holder when we lack information about | 
| 44 |  | * a specific atom type.  In particular, the Langevin algorithms must | 
| 97 |  | unsigned int GetSize() { return GetNumberOfElements(); } | 
| 98 |  | /** | 
| 99 |  | * @return the atomic number matching the element symbol passed | 
| 100 | + | * or 0 if not defined. | 
| 101 | + | * @param str the element symbol | 
| 102 | + | */ | 
| 103 | + | int GetAtomicNum(const char *str); | 
| 104 | + | /** | 
| 105 | + | * @return the atomic number matching the element symbol passed | 
| 106 |  | * or 0 if not defined. For 'D' or 'T' hydrogen isotopes, will return | 
| 107 |  | * a value in the second argument | 
| 108 |  | * @param str the element symbol | 
| 109 |  | * @param iso the isotope index for Deuterium or Tritium | 
| 110 |  | */ | 
| 106 | – | int GetAtomicNum(const char *str); | 
| 111 |  | int GetAtomicNum(const char *str, int &iso); | 
| 112 |  | /** | 
| 113 |  | * @return the element symbol matching the atomic number passed | 
| 114 |  | * @param atomicnum the atomic number of the element | 
| 115 |  | */ | 
| 116 | < | char *GetSymbol(int atomicnum); | 
| 116 | > | const char *GetSymbol(int atomicnum); | 
| 117 |  | /** | 
| 118 |  | * @return the van der Waals radius for this atomic number | 
| 119 |  | * @param atomicnum the atomic number of the element |