--- trunk/src/utils/GenericData.hpp 2005/04/15 22:04:00 507 +++ trunk/src/utils/GenericData.hpp 2010/05/10 17:28:26 1442 @@ -6,19 +6,10 @@ * redistribute this software in source and binary code form, provided * that the following conditions are met: * - * 1. Acknowledgement of the program authors must be made in any - * publication of scientific results based in part on use of the - * program. An acceptable form of acknowledgement is citation of - * the article in which the program was described (Matthew - * A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher - * J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented - * Parallel Simulation Engine for Molecular Dynamics," - * J. Comput. Chem. 26, pp. 252-271 (2005)) - * - * 2. Redistributions of source code must retain the above copyright + * 1. Redistributions of source code must retain the above copyright * notice, this list of conditions and the following disclaimer. * - * 3. Redistributions in binary form must reproduce the above copyright + * 2. Redistributions in binary form must reproduce the above copyright * notice, this list of conditions and the following disclaimer in the * documentation and/or other materials provided with the * distribution. @@ -37,6 +28,15 @@ * arising out of the use of or inability to use software, even if the * University of Notre Dame has been advised of the possibility of * such damages. + * + * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your + * research, please cite the appropriate papers when you publish your + * work. Good starting points are: + * + * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). + * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). + * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). + * [4] Vardeman & Gezelter, in progress (2009). */ /** @@ -54,7 +54,8 @@ #include #include #include -namespace oopse{ +#include "config.h" +namespace OpenMD{ /** * @ class GenericData GenericData.hpp "utils/GenericData.hpp" @@ -148,8 +149,8 @@ namespace oopse{ /** FloatGenericData is a generic data type contains a float variable */ typedef SimpleTypeData FloatGenericData; - /** DoubleGenericData is a generic data type contains a double variable */ - typedef SimpleTypeData DoubleGenericData; + /** DoubleGenericData is a generic data type contains a RealType variable */ + typedef SimpleTypeData DoubleGenericData; /** * @typedef StringGenericData @@ -160,7 +161,7 @@ namespace oopse{ * PropertyMap propMap; * GenericData* gdata; * - * s->setData("OOPSE"); + * s->setData("OpenMD"); * propMap->addProperty(s); * * gdata = propMap->getPropertyByName("MyStringGenericData"); @@ -189,7 +190,7 @@ namespace oopse{ VectorTypeData(const std::string& id) : GenericData(id){} - VectorTypeData(const SelfType& s) : SelfType(s){} + VectorTypeData(const SelfType& s) : data_(s){} SelfType& operator =(const SelfType& s){ if (this == &s) @@ -217,9 +218,9 @@ namespace oopse{ /** * @typedef IntVectorGenericData - * A generic data type contains a std::vector variable. + * A generic data type contains a std::vector variable. */ - typedef VectorTypeData DoubleVectorGenericData; + typedef VectorTypeData DoubleVectorGenericData; /** * @typedef StringVectorGenericData @@ -232,7 +233,7 @@ namespace oopse{ * std::vector::iterator iter; * * sv->push_back("Hello World"); - * sv->push_back("OOPSE"); + * sv->push_back("OpenMD"); * * propMap.addProperty(sv); * @@ -252,5 +253,5 @@ namespace oopse{ typedef VectorTypeData StringVectorGenericData; -} // namespace oopse +} // namespace OpenMD #endif //UTIL _GENERICDATA_HPP