| 1 | < | /* | 
| 1 | > | /* | 
| 2 |  | * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. | 
| 3 |  | * | 
| 4 |  | * The University of Notre Dame grants you ("Licensee") a | 
| 53 |  | #include "math/Vector3.hpp" | 
| 54 |  | #include "UseTheForce/ForceField.hpp" | 
| 55 |  | namespace oopse { | 
| 56 | < | //convert lattice vector to rotation matrix | 
| 57 | < | double getAtomMass(const std::string& at, ForceField* myFF); | 
| 58 | < | double getMolMass(MoleculeStamp *molStamp, ForceField *myFF); | 
| 59 | < | RotMat3x3d latVec2RotMat(const Vector3d& lv); | 
| 60 | < | class MoLocator{ | 
| 61 | < | public: | 
| 62 | < | MoLocator( MoleculeStamp* theStamp, ForceField* theFF); | 
| 63 | < | void placeMol( const Vector3d& offset, const Vector3d& ort, Molecule* mol); | 
| 64 | < | private: | 
| 65 | < | void calcRef( void ); | 
| 66 | < | MoleculeStamp* myStamp; | 
| 56 | > | //convert lattice vector to rotation matrix | 
| 57 | > | double getAtomMass(const std::string& at, ForceField* myFF); | 
| 58 | > | double getMolMass(MoleculeStamp *molStamp, ForceField *myFF); | 
| 59 | > | RotMat3x3d latVec2RotMat(const Vector3d& lv); | 
| 60 | > | class MoLocator{ | 
| 61 | > | public: | 
| 62 | > | MoLocator( MoleculeStamp* theStamp, ForceField* theFF); | 
| 63 | > | void placeMol( const Vector3d& offset, const Vector3d& ort, Molecule* mol); | 
| 64 | > | private: | 
| 65 | > | void calcRef( void ); | 
| 66 | > | MoleculeStamp* myStamp; | 
| 67 |  |  | 
| 68 | < | ForceField* myFF; | 
| 69 | < | std::vector<Vector3d> refCoords; | 
| 70 | < | int nIntegrableObjects; | 
| 68 | > | ForceField* myFF; | 
| 69 | > | std::vector<Vector3d> refCoords; | 
| 70 | > | int nIntegrableObjects; | 
| 71 |  |  | 
| 72 | < | }; | 
| 72 | > | }; | 
| 73 |  |  | 
| 74 |  | } | 
| 75 |  | #endif |