| 35 |  | * | 
| 36 |  | * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). | 
| 37 |  | * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). | 
| 38 | < | * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). | 
| 39 | < | * [4]  Vardeman & Gezelter, in progress (2009). | 
| 40 | < | * | 
| 38 | > | * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008). | 
| 39 | > | * [4] Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010). | 
| 40 | > | * [4] , Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). * | 
| 41 |  | *  ParameterManager.hpp | 
| 42 |  | * | 
| 43 |  | *  Created by Charles F. Vardeman II on 11/16/05. | 
| 149 |  | } else { | 
| 150 |  | sprintf(painCave.errMsg, | 
| 151 |  | "ParameterManager Error: " | 
| 152 | < | "Not enough tokens to make pair!\n"); | 
| 152 | > | "Incorrect number of tokens to make a pair!\n"); | 
| 153 |  | painCave.severity = OPENMD_ERROR; | 
| 154 |  | painCave.isFatal = 1; | 
| 155 |  | simError(); | 
| 159 |  | static std::string getParamType() { return "std::pair<int, int>";} | 
| 160 |  | }; | 
| 161 |  |  | 
| 162 | + | //OpenMD's internal Vector3d | 
| 163 | + | template<> | 
| 164 | + | struct ParameterTraits<OpenMD::Vector3d >{ | 
| 165 | + | typedef OpenMD::Vector3d  RepType; | 
| 166 | + | template<typename T> static bool    convert(T, RepType&){return false;} | 
| 167 | + | template<typename T> static RepType convert(T v)        {RepType tmp; convert(v,tmp);return tmp;} | 
| 168 | + | static bool convert(RepType v, RepType& r)            {r=v; return true;} | 
| 169 | + | static bool convert(std::string v, RepType& r) { | 
| 170 | + | std::cerr << "calling tokenizer\n"; | 
| 171 | + | OpenMD::StringTokenizer tokenizer(v," ();,\t\n\r"); | 
| 172 | + | if (tokenizer.countTokens() == 3) { | 
| 173 | + | RealType v1 = tokenizer.nextTokenAsDouble(); | 
| 174 | + | RealType v2 = tokenizer.nextTokenAsDouble(); | 
| 175 | + | RealType v3 = tokenizer.nextTokenAsDouble(); | 
| 176 | + | r = OpenMD::Vector3d(v1, v2, v3); | 
| 177 | + | return true; | 
| 178 | + | } else { | 
| 179 | + | sprintf(painCave.errMsg, | 
| 180 | + | "ParameterManager Error: " | 
| 181 | + | "Incorrect number of tokens to make a Vector3!\n"); | 
| 182 | + | painCave.severity = OPENMD_ERROR; | 
| 183 | + | painCave.isFatal = 1; | 
| 184 | + | simError(); | 
| 185 | + | } | 
| 186 | + | return false; | 
| 187 | + | } | 
| 188 | + | static std::string getParamType() { return "OpenMD::Vector3d";} | 
| 189 | + | }; | 
| 190 |  |  | 
| 191 | + |  | 
| 192 |  | class ParameterBase { | 
| 193 |  | public: | 
| 194 |  | ParameterBase() : keyword_(), optional_(false), defaultValue_(false), empty_(true) {} | 
| 205 |  | virtual bool setData(unsigned long int) = 0; | 
| 206 |  | virtual bool setData(RealType) = 0; | 
| 207 |  | virtual bool setData(std::pair<int, int>) = 0; | 
| 208 | + | virtual bool setData(OpenMD::Vector3d) = 0; | 
| 209 |  | virtual std::string getParamType() = 0; | 
| 210 |  | protected: | 
| 211 |  | std::string keyword_; | 
| 218 |  | class Parameter : public ParameterBase{ | 
| 219 |  | public: | 
| 220 |  | typedef ParameterTraits<ParamType> ValueType; | 
| 221 | < | void setDefaultValue(const ParamType& value) {data_ = value; defaultValue_ = true;} | 
| 221 | > | void setDefaultValue(const ParamType& value) {data_ = value; defaultValue_ = true; empty_ = false;} | 
| 222 |  | ParamType getData() { return data_;} | 
| 223 |  |  | 
| 224 |  | virtual bool setData(std::string sval) { | 
| 240 |  | virtual bool setData(std::pair<int, int> pval) { | 
| 241 |  | return internalSetData<std::pair<int, int> >(pval); | 
| 242 |  | } | 
| 243 | + | virtual bool setData(OpenMD::Vector3d pval) { | 
| 244 | + | return internalSetData<OpenMD::Vector3d >(pval); | 
| 245 | + | } | 
| 246 |  |  | 
| 247 |  | virtual std::string getParamType() { return ParameterTraits<ParamType>::getParamType();} | 
| 248 |  | private: | 
| 268 |  | bool have##NAME() { return !NAME.empty();}  \ | 
| 269 |  | TYPE get##NAME() { return NAME.getData();} | 
| 270 |  |  | 
| 271 | + | #define DeclareAlterableParameter(NAME, TYPE)         \ | 
| 272 | + | private:                                                   \ | 
| 273 | + | Parameter<TYPE> NAME;                                     \ | 
| 274 | + | public:                                                      \ | 
| 275 | + | bool have##NAME() { return !NAME.empty();}  \ | 
| 276 | + | TYPE get##NAME() { return NAME.getData();}  \ | 
| 277 | + | bool set##NAME(TYPE s) { return NAME.setData(s);}  \ | 
| 278 |  |  | 
| 279 |  |  | 
| 280 | + |  | 
| 281 |  | #define DefineParameter(NAME,KEYWORD)                              \ | 
| 282 |  | NAME.setKeyword(KEYWORD);                  \ | 
| 283 |  | parameters_.insert(std::map<std::string, ParameterBase*>::value_type(std::string(KEYWORD), static_cast<ParameterBase*>(&NAME))); |