| 6 |  | * redistribute this software in source and binary code form, provided | 
| 7 |  | * that the following conditions are met: | 
| 8 |  | * | 
| 9 | < | * 1. Acknowledgement of the program authors must be made in any | 
| 10 | < | *    publication of scientific results based in part on use of the | 
| 11 | < | *    program.  An acceptable form of acknowledgement is citation of | 
| 12 | < | *    the article in which the program was described (Matthew | 
| 13 | < | *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher | 
| 14 | < | *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented | 
| 15 | < | *    Parallel Simulation Engine for Molecular Dynamics," | 
| 16 | < | *    J. Comput. Chem. 26, pp. 252-271 (2005)) | 
| 17 | < | * | 
| 18 | < | * 2. Redistributions of source code must retain the above copyright | 
| 9 | > | * 1. Redistributions of source code must retain the above copyright | 
| 10 |  | *    notice, this list of conditions and the following disclaimer. | 
| 11 |  | * | 
| 12 | < | * 3. Redistributions in binary form must reproduce the above copyright | 
| 12 | > | * 2. Redistributions in binary form must reproduce the above copyright | 
| 13 |  | *    notice, this list of conditions and the following disclaimer in the | 
| 14 |  | *    documentation and/or other materials provided with the | 
| 15 |  | *    distribution. | 
| 29 |  | * University of Notre Dame has been advised of the possibility of | 
| 30 |  | * such damages. | 
| 31 |  | * | 
| 32 | < | * | 
| 32 | > | * SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your | 
| 33 | > | * research, please cite the appropriate papers when you publish your | 
| 34 | > | * work.  Good starting points are: | 
| 35 | > | * | 
| 36 | > | * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). | 
| 37 | > | * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). | 
| 38 | > | * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). | 
| 39 | > | * [4] Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010). | 
| 40 | > | * [4] , Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). * | 
| 41 |  | *  ParameterManager.hpp | 
| 43 | – | *  OOPSE-2.0 | 
| 42 |  | * | 
| 43 |  | *  Created by Charles F. Vardeman II on 11/16/05. | 
| 44 |  | *  @author  Charles F. Vardeman II | 
| 45 | < | *  @version $Id: ParameterManager.hpp,v 1.1 2005-11-16 21:37:45 chuckv Exp $ | 
| 45 | > | *  @version $Id$ | 
| 46 |  | * | 
| 47 |  | */ | 
| 48 |  |  | 
| 50 |  | #define UTILS_PARAMETERMANAGER_HPP | 
| 51 |  |  | 
| 52 |  | #include <iostream> | 
| 53 | + | #include <cstdio> | 
| 54 |  |  | 
| 55 |  | #include <stdlib.h> | 
| 56 |  | #include <vector> | 
| 57 |  | #include <string> | 
| 58 |  | #include <map> | 
| 59 | + | #include "config.h" | 
| 60 |  |  | 
| 61 |  |  | 
| 62 | < |  | 
| 62 | > | #include "utils/simError.h" | 
| 63 | > | #include "utils/StringTokenizer.hpp" | 
| 64 |  | #include "utils/CaseConversion.hpp" | 
| 65 |  |  | 
| 66 |  |  | 
| 66 | – |  | 
| 67 |  | template<typename T> | 
| 68 |  | struct ParameterTraits; | 
| 69 |  |  | 
| 84 |  | template<typename T> static bool    convert(T, RepType&){return false;} | 
| 85 |  | template<typename T> static RepType convert(T v)        {RepType tmp; convert(v,tmp);return tmp;} | 
| 86 |  | static bool convert(std::string v, RepType& r) { | 
| 87 | < | oopse::toLower(v); | 
| 87 | > | OpenMD::toLower(v); | 
| 88 |  | bool result = false; | 
| 89 |  | if (v == "true") { | 
| 90 |  | r = true; | 
| 109 |  | static std::string getParamType() { return "int";} | 
| 110 |  | }; | 
| 111 |  |  | 
| 112 | < | //double | 
| 112 | > | //int | 
| 113 | > | template<> | 
| 114 | > | struct ParameterTraits<unsigned long int>{ | 
| 115 | > | typedef unsigned long int RepType; | 
| 116 | > | template<typename T> static bool    convert(T, RepType&){return false;} | 
| 117 | > | template<typename T> static RepType convert(T v)        {RepType tmp; convert(v,tmp);return tmp;} | 
| 118 | > | static bool convert(RepType v, RepType& r)            { r=v; return true;} | 
| 119 | > | static bool convert(int v, RepType& r)                {r = static_cast<unsigned long int>(v); return true;} | 
| 120 | > | static std::string getParamType() { return "unsigned long int";} | 
| 121 | > | }; | 
| 122 | > |  | 
| 123 | > | //RealType | 
| 124 |  | template<> | 
| 125 | < | struct ParameterTraits<double>{ | 
| 126 | < | typedef double RepType; | 
| 125 | > | struct ParameterTraits<RealType>{ | 
| 126 | > | typedef RealType RepType; | 
| 127 |  | template<typename T> static bool    convert(T, RepType&){return false;} | 
| 128 |  | template<typename T> static RepType convert(T v)        {RepType tmp; convert(v,tmp);return tmp;} | 
| 129 |  | static bool convert(RepType v, RepType& r)            {r=v; return true;} | 
| 130 | < | static bool convert(int v, RepType& r)                {r = static_cast<double>(v); return true;} | 
| 131 | < | static std::string getParamType() { return "double";} | 
| 130 | > | static bool convert(int v, RepType& r)                {r = static_cast<RealType>(v); return true;} | 
| 131 | > | static bool convert(unsigned long int v, RepType& r)  {r = static_cast<RealType>(v); return true;} | 
| 132 | > | static std::string getParamType() { return "RealType";} | 
| 133 |  | }; | 
| 134 |  |  | 
| 135 | + | //Pair of ints | 
| 136 | + | template<> | 
| 137 | + | struct ParameterTraits<std::pair<int, int> >{ | 
| 138 | + | typedef std::pair<int, int>  RepType; | 
| 139 | + | template<typename T> static bool    convert(T, RepType&){return false;} | 
| 140 | + | template<typename T> static RepType convert(T v)        {RepType tmp; convert(v,tmp);return tmp;} | 
| 141 | + | static bool convert(RepType v, RepType& r)            {r=v; return true;} | 
| 142 | + | static bool convert(std::string v, RepType& r) { | 
| 143 | + | OpenMD::StringTokenizer tokenizer(v," ;,\t\n\r"); | 
| 144 | + | if (tokenizer.countTokens() == 2) { | 
| 145 | + | int atom1 = tokenizer.nextTokenAsInt(); | 
| 146 | + | int atom2 = tokenizer.nextTokenAsInt(); | 
| 147 | + | r = std::make_pair(atom1, atom2); | 
| 148 | + | return true; | 
| 149 | + | } else { | 
| 150 | + | sprintf(painCave.errMsg, | 
| 151 | + | "ParameterManager Error: " | 
| 152 | + | "Incorrect number of tokens to make a pair!\n"); | 
| 153 | + | painCave.severity = OPENMD_ERROR; | 
| 154 | + | painCave.isFatal = 1; | 
| 155 | + | simError(); | 
| 156 | + | } | 
| 157 | + | return false; | 
| 158 | + | } | 
| 159 | + | static std::string getParamType() { return "std::pair<int, int>";} | 
| 160 | + | }; | 
| 161 |  |  | 
| 162 | + | //OpenMD's internal Vector3d | 
| 163 | + | template<> | 
| 164 | + | struct ParameterTraits<OpenMD::Vector3d >{ | 
| 165 | + | typedef OpenMD::Vector3d  RepType; | 
| 166 | + | template<typename T> static bool    convert(T, RepType&){return false;} | 
| 167 | + | template<typename T> static RepType convert(T v)        {RepType tmp; convert(v,tmp);return tmp;} | 
| 168 | + | static bool convert(RepType v, RepType& r)            {r=v; return true;} | 
| 169 | + | static bool convert(std::string v, RepType& r) { | 
| 170 | + | std::cerr << "calling tokenizer\n"; | 
| 171 | + | OpenMD::StringTokenizer tokenizer(v," ();,\t\n\r"); | 
| 172 | + | if (tokenizer.countTokens() == 3) { | 
| 173 | + | RealType v1 = tokenizer.nextTokenAsDouble(); | 
| 174 | + | RealType v2 = tokenizer.nextTokenAsDouble(); | 
| 175 | + | RealType v3 = tokenizer.nextTokenAsDouble(); | 
| 176 | + | r = OpenMD::Vector3d(v1, v2, v3); | 
| 177 | + | return true; | 
| 178 | + | } else { | 
| 179 | + | sprintf(painCave.errMsg, | 
| 180 | + | "ParameterManager Error: " | 
| 181 | + | "Incorrect number of tokens to make a Vector3!\n"); | 
| 182 | + | painCave.severity = OPENMD_ERROR; | 
| 183 | + | painCave.isFatal = 1; | 
| 184 | + | simError(); | 
| 185 | + | } | 
| 186 | + | return false; | 
| 187 | + | } | 
| 188 | + | static std::string getParamType() { return "OpenMD::Vector3d";} | 
| 189 | + | }; | 
| 190 | + |  | 
| 191 | + |  | 
| 192 |  | class ParameterBase { | 
| 193 |  | public: | 
| 194 |  | ParameterBase() : keyword_(), optional_(false), defaultValue_(false), empty_(true) {} | 
| 202 |  | bool empty() {return empty_;} | 
| 203 |  | virtual bool setData(std::string) = 0; | 
| 204 |  | virtual bool setData(int) = 0; | 
| 205 | < | virtual bool setData(double) = 0; | 
| 205 | > | virtual bool setData(unsigned long int) = 0; | 
| 206 | > | virtual bool setData(RealType) = 0; | 
| 207 | > | virtual bool setData(std::pair<int, int>) = 0; | 
| 208 | > | virtual bool setData(OpenMD::Vector3d) = 0; | 
| 209 |  | virtual std::string getParamType() = 0; | 
| 210 |  | protected: | 
| 211 | < | std::string keyword_; | 
| 211 | > | std::string keyword_; | 
| 212 |  | bool optional_; | 
| 213 |  | bool defaultValue_; | 
| 214 |  | bool empty_; | 
| 218 |  | class Parameter : public ParameterBase{ | 
| 219 |  | public: | 
| 220 |  | typedef ParameterTraits<ParamType> ValueType; | 
| 221 | < | void setDefaultValue(const ParamType& value) {data_ = value; defaultValue_ = true;} | 
| 221 | > | void setDefaultValue(const ParamType& value) {data_ = value; defaultValue_ = true; empty_ = false;} | 
| 222 |  | ParamType getData() { return data_;} | 
| 223 |  |  | 
| 224 |  | virtual bool setData(std::string sval) { | 
| 225 |  | return internalSetData<std::string>(sval); | 
| 226 |  | } | 
| 227 | + |  | 
| 228 |  | virtual bool setData(int ival) { | 
| 229 |  | return internalSetData<int>(ival); | 
| 230 |  | } | 
| 231 | + |  | 
| 232 | + | virtual bool setData(unsigned long int lival) { | 
| 233 | + | return internalSetData<unsigned long int>(lival); | 
| 234 | + | } | 
| 235 |  |  | 
| 236 | < | virtual bool setData(double dval) { | 
| 237 | < | return internalSetData<double>(dval); | 
| 236 | > | virtual bool setData(RealType dval) { | 
| 237 | > | return internalSetData<RealType>(dval); | 
| 238 |  | } | 
| 239 | + |  | 
| 240 | + | virtual bool setData(std::pair<int, int> pval) { | 
| 241 | + | return internalSetData<std::pair<int, int> >(pval); | 
| 242 | + | } | 
| 243 | + | virtual bool setData(OpenMD::Vector3d pval) { | 
| 244 | + | return internalSetData<OpenMD::Vector3d >(pval); | 
| 245 | + | } | 
| 246 |  |  | 
| 247 |  | virtual std::string getParamType() { return ParameterTraits<ParamType>::getParamType();} | 
| 248 |  | private: | 
| 268 |  | bool have##NAME() { return !NAME.empty();}  \ | 
| 269 |  | TYPE get##NAME() { return NAME.getData();} | 
| 270 |  |  | 
| 271 | + | #define DeclareAlterableParameter(NAME, TYPE)         \ | 
| 272 | + | private:                                                   \ | 
| 273 | + | Parameter<TYPE> NAME;                                     \ | 
| 274 | + | public:                                                      \ | 
| 275 | + | bool have##NAME() { return !NAME.empty();}  \ | 
| 276 | + | TYPE get##NAME() { return NAME.getData();}  \ | 
| 277 | + | bool set##NAME(TYPE s) { return NAME.setData(s);}  \ | 
| 278 |  |  | 
| 279 |  |  | 
| 280 | + |  | 
| 281 |  | #define DefineParameter(NAME,KEYWORD)                              \ | 
| 282 |  | NAME.setKeyword(KEYWORD);                  \ | 
| 283 | < | parameters_.insert(std::make_pair(std::string(KEYWORD),  &NAME)); | 
| 283 | > | parameters_.insert(std::map<std::string, ParameterBase*>::value_type(std::string(KEYWORD), static_cast<ParameterBase*>(&NAME))); | 
| 284 |  |  | 
| 285 |  | #define DefineOptionalParameter(NAME,KEYWORD)                              \ | 
| 286 |  | NAME.setKeyword(KEYWORD); NAME.setOptional(true);                    \ | 
| 287 | < | parameters_.insert(std::make_pair(std::string(KEYWORD),  &NAME)); | 
| 287 | > | parameters_.insert(std::map<std::string, ParameterBase*>::value_type(std::string(KEYWORD), static_cast<ParameterBase*>(&NAME))); | 
| 288 |  |  | 
| 289 |  | #define DefineOptionalParameterWithDefaultValue(NAME,KEYWORD, DEFAULTVALUE)                              \ | 
| 290 |  | NAME.setKeyword(KEYWORD); NAME.setOptional(true); NAME.setDefaultValue(DEFAULTVALUE);                      \ | 
| 291 | < | parameters_.insert(std::make_pair(std::string(KEYWORD),  &NAME)); | 
| 291 | > | parameters_.insert(std::map<std::string, ParameterBase*>::value_type(std::string(KEYWORD), static_cast<ParameterBase*>(&NAME))); | 
| 292 |  |  | 
| 293 |  | #define CheckParameter(NAME, CONSTRAINT)                              \ | 
| 294 | < | if (!NAME.empty()) { if (!(CONSTRAINT)(NAME.getData())) { sprintf(painCave.errMsg,"Error in checking %s : should be %s\n",NAME.getKeyword().c_str(),(CONSTRAINT).getConstraintDescription().c_str()); painCave.isFatal = 1; painCave.severity = OOPSE_ERROR; simError();} } | 
| 294 | > | if (!NAME.empty()) { if (!(CONSTRAINT)(NAME.getData())) { sprintf(painCave.errMsg,"Error in checking %s : should be %s\n",NAME.getKeyword().c_str(),(CONSTRAINT).getConstraintDescription().c_str()); painCave.isFatal = 1; painCave.severity = OPENMD_ERROR; simError();} } | 
| 295 |  |  | 
| 296 |  |  | 
| 297 |  |  |