| 1 | gezelter | 507 | /* | 
| 2 | gezelter | 246 | * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. | 
| 3 |  |  | * | 
| 4 |  |  | * The University of Notre Dame grants you ("Licensee") a | 
| 5 |  |  | * non-exclusive, royalty free, license to use, modify and | 
| 6 |  |  | * redistribute this software in source and binary code form, provided | 
| 7 |  |  | * that the following conditions are met: | 
| 8 |  |  | * | 
| 9 | gezelter | 1390 | * 1. Redistributions of source code must retain the above copyright | 
| 10 | gezelter | 246 | *    notice, this list of conditions and the following disclaimer. | 
| 11 |  |  | * | 
| 12 | gezelter | 1390 | * 2. Redistributions in binary form must reproduce the above copyright | 
| 13 | gezelter | 246 | *    notice, this list of conditions and the following disclaimer in the | 
| 14 |  |  | *    documentation and/or other materials provided with the | 
| 15 |  |  | *    distribution. | 
| 16 |  |  | * | 
| 17 |  |  | * This software is provided "AS IS," without a warranty of any | 
| 18 |  |  | * kind. All express or implied conditions, representations and | 
| 19 |  |  | * warranties, including any implied warranty of merchantability, | 
| 20 |  |  | * fitness for a particular purpose or non-infringement, are hereby | 
| 21 |  |  | * excluded.  The University of Notre Dame and its licensors shall not | 
| 22 |  |  | * be liable for any damages suffered by licensee as a result of | 
| 23 |  |  | * using, modifying or distributing the software or its | 
| 24 |  |  | * derivatives. In no event will the University of Notre Dame or its | 
| 25 |  |  | * licensors be liable for any lost revenue, profit or data, or for | 
| 26 |  |  | * direct, indirect, special, consequential, incidental or punitive | 
| 27 |  |  | * damages, however caused and regardless of the theory of liability, | 
| 28 |  |  | * arising out of the use of or inability to use software, even if the | 
| 29 |  |  | * University of Notre Dame has been advised of the possibility of | 
| 30 |  |  | * such damages. | 
| 31 | gezelter | 1390 | * | 
| 32 |  |  | * SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your | 
| 33 |  |  | * research, please cite the appropriate papers when you publish your | 
| 34 |  |  | * work.  Good starting points are: | 
| 35 |  |  | * | 
| 36 |  |  | * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). | 
| 37 |  |  | * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). | 
| 38 | gezelter | 1879 | * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008). | 
| 39 | gezelter | 1782 | * [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010). | 
| 40 |  |  | * [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). | 
| 41 | gezelter | 246 | */ | 
| 42 |  |  |  | 
| 43 |  |  | #include <iostream> | 
| 44 |  |  | #include <iterator> | 
| 45 |  |  | #include <sstream> | 
| 46 |  |  | #include "utils/StringTokenizer.hpp" | 
| 47 |  |  |  | 
| 48 | gezelter | 1390 | namespace OpenMD { | 
| 49 | gezelter | 246 |  | 
| 50 |  |  |  | 
| 51 | gezelter | 507 | StringTokenizer::StringTokenizer(const std::string & str, const std::string & delim) | 
| 52 |  |  | : tokenString_(str), delim_(delim), returnTokens_(false), | 
| 53 |  |  | currentPos_(tokenString_.begin()), end_(tokenString_.end()){ | 
| 54 | gezelter | 246 |  | 
| 55 | gezelter | 2045 | } | 
| 56 | gezelter | 246 |  | 
| 57 | gezelter | 507 | StringTokenizer::StringTokenizer(std::string::const_iterator& first, std::string::const_iterator& last, | 
| 58 |  |  | const std::string & delim) | 
| 59 |  |  | : tokenString_(first, last) , delim_(delim), returnTokens_(false), | 
| 60 |  |  | currentPos_(tokenString_.begin()), end_(tokenString_.end()) { | 
| 61 | gezelter | 246 |  | 
| 62 | gezelter | 2045 | } | 
| 63 | gezelter | 246 |  | 
| 64 | gezelter | 507 | StringTokenizer::StringTokenizer(const std::string&str, const std::string&delim, | 
| 65 |  |  | bool returnTokens) | 
| 66 |  |  | : tokenString_(str), delim_(delim), returnTokens_(returnTokens), | 
| 67 |  |  | currentPos_(tokenString_.begin()), end_(tokenString_.end()) { | 
| 68 | gezelter | 246 |  | 
| 69 | gezelter | 2045 | } | 
| 70 | gezelter | 246 |  | 
| 71 | gezelter | 507 | bool StringTokenizer::isDelimiter(const char c) { | 
| 72 | gezelter | 246 | return delim_.find(c) == std::string::npos ? false : true; | 
| 73 | gezelter | 507 | } | 
| 74 | gezelter | 246 |  | 
| 75 | gezelter | 507 | int StringTokenizer::countTokens() { | 
| 76 | gezelter | 246 |  | 
| 77 |  |  | std::string::const_iterator tmpIter = currentPos_; | 
| 78 |  |  | int numToken = 0; | 
| 79 |  |  |  | 
| 80 |  |  | while (true) { | 
| 81 |  |  |  | 
| 82 | gezelter | 507 | //skip delimiter first | 
| 83 |  |  | while( tmpIter != end_ && isDelimiter(*tmpIter)) { | 
| 84 |  |  | ++tmpIter; | 
| 85 | gezelter | 246 |  | 
| 86 | gezelter | 507 | if (returnTokens_) { | 
| 87 |  |  | //if delimiter is consider as token | 
| 88 |  |  | ++numToken; | 
| 89 |  |  | } | 
| 90 |  |  | } | 
| 91 | gezelter | 246 |  | 
| 92 | gezelter | 507 | if (tmpIter == end_) { | 
| 93 |  |  | break; | 
| 94 |  |  | } | 
| 95 | gezelter | 246 |  | 
| 96 | gezelter | 507 | //encount a token here | 
| 97 |  |  | while ( tmpIter != end_ && !isDelimiter(*tmpIter) ) { | 
| 98 |  |  | ++tmpIter; | 
| 99 |  |  | } | 
| 100 | gezelter | 246 |  | 
| 101 | gezelter | 507 | ++numToken; | 
| 102 | gezelter | 246 |  | 
| 103 |  |  | } | 
| 104 |  |  |  | 
| 105 |  |  | return numToken; | 
| 106 | gezelter | 507 | } | 
| 107 | gezelter | 246 |  | 
| 108 | gezelter | 507 | bool StringTokenizer::hasMoreTokens() { | 
| 109 | gezelter | 246 |  | 
| 110 |  |  | if (currentPos_ == end_) { | 
| 111 | gezelter | 507 | return false; | 
| 112 | gezelter | 246 | } else if (returnTokens_) { | 
| 113 | gezelter | 507 | return true; | 
| 114 | gezelter | 246 | } else { | 
| 115 | gezelter | 507 | std::string::const_iterator i = currentPos_; | 
| 116 | gezelter | 246 |  | 
| 117 | gezelter | 2045 | //walk through the remaining string to check whether it contains | 
| 118 |  |  | //non-delimeter or not | 
| 119 | gezelter | 507 | while(i != end_ && isDelimiter(*i)) { | 
| 120 |  |  | ++i; | 
| 121 |  |  | } | 
| 122 | gezelter | 246 |  | 
| 123 | gezelter | 507 | return i != end_ ? true : false; | 
| 124 | gezelter | 246 | } | 
| 125 | gezelter | 507 | } | 
| 126 | gezelter | 246 |  | 
| 127 | gezelter | 507 | std::string StringTokenizer::nextToken() { | 
| 128 | gezelter | 246 | std::string result; | 
| 129 |  |  |  | 
| 130 |  |  | if(currentPos_ != end_) { | 
| 131 | gezelter | 507 | std::insert_iterator<std::string> insertIter(result, result.begin()); | 
| 132 | gezelter | 246 |  | 
| 133 | gezelter | 507 | while( currentPos_ != end_ && isDelimiter(*currentPos_)) { | 
| 134 | gezelter | 246 |  | 
| 135 | gezelter | 507 | if (returnTokens_) { | 
| 136 |  |  | *insertIter++ = *currentPos_++; | 
| 137 |  |  | return result; | 
| 138 |  |  | } | 
| 139 | gezelter | 246 |  | 
| 140 | gezelter | 507 | ++currentPos_; | 
| 141 |  |  | } | 
| 142 | gezelter | 246 |  | 
| 143 | gezelter | 507 | while (currentPos_ != end_ && !isDelimiter(*currentPos_)) { | 
| 144 |  |  | *insertIter++ = *currentPos_++; | 
| 145 |  |  | } | 
| 146 | gezelter | 246 |  | 
| 147 |  |  | } | 
| 148 |  |  |  | 
| 149 |  |  | return result; | 
| 150 | gezelter | 507 | } | 
| 151 | gezelter | 246 |  | 
| 152 | gezelter | 2073 | void StringTokenizer::skipToken() { | 
| 153 |  |  |  | 
| 154 |  |  | if(currentPos_ != end_) { | 
| 155 |  |  | while( currentPos_ != end_ && isDelimiter(*currentPos_)) { | 
| 156 |  |  |  | 
| 157 |  |  | if (returnTokens_) { | 
| 158 |  |  | *currentPos_++; | 
| 159 |  |  | return; | 
| 160 |  |  | } | 
| 161 |  |  |  | 
| 162 |  |  | ++currentPos_; | 
| 163 |  |  | } | 
| 164 |  |  |  | 
| 165 |  |  | while (currentPos_ != end_ && !isDelimiter(*currentPos_)) { | 
| 166 |  |  | *currentPos_++; | 
| 167 |  |  | } | 
| 168 |  |  | } | 
| 169 |  |  | } | 
| 170 |  |  |  | 
| 171 | gezelter | 507 | bool StringTokenizer::nextTokenAsBool() { | 
| 172 | gezelter | 246 | std::string token = nextToken(); | 
| 173 |  |  | std::istringstream iss(token); | 
| 174 |  |  | bool result; | 
| 175 |  |  |  | 
| 176 |  |  | if (iss >> result) { | 
| 177 | gezelter | 507 | return result; | 
| 178 | gezelter | 246 | } else { | 
| 179 | gezelter | 507 | std::cerr << "unable to convert " << token << " to a bool" << std::endl; | 
| 180 |  |  | return false; | 
| 181 | gezelter | 246 | } | 
| 182 | gezelter | 507 | } | 
| 183 | tim | 261 |  | 
| 184 | gezelter | 507 | //Since libstdc++(GCC 3.2) has an i/ostream::operator>>/<<(streambuf*) bug (Bug 9318) | 
| 185 |  |  | //Instead of using iostream facility, we use C library | 
| 186 |  |  | int StringTokenizer::nextTokenAsInt() { | 
| 187 | gezelter | 246 | std::string token = nextToken(); | 
| 188 | tim | 261 |  | 
| 189 |  |  | return atoi(token.c_str()); | 
| 190 | gezelter | 507 | } | 
| 191 | gezelter | 246 |  | 
| 192 | gezelter | 507 | float StringTokenizer::nextTokenAsFloat() { | 
| 193 | gezelter | 246 | std::string token = nextToken(); | 
| 194 | tim | 261 | convertFortranNumber(token); | 
| 195 |  |  | return (float) (atof(token.c_str())); | 
| 196 | gezelter | 507 | } | 
| 197 | gezelter | 246 |  | 
| 198 | tim | 963 | RealType StringTokenizer::nextTokenAsDouble() { | 
| 199 | gezelter | 246 | std::string token = nextToken(); | 
| 200 | tim | 261 | convertFortranNumber(token); | 
| 201 |  |  | return atof(token.c_str()); | 
| 202 | gezelter | 507 | } | 
| 203 | gezelter | 246 |  | 
| 204 | gezelter | 507 | std::string  StringTokenizer::peekNextToken() { | 
| 205 | gezelter | 246 | std::string result; | 
| 206 |  |  | std::string::const_iterator tmpIter = currentPos_; | 
| 207 |  |  |  | 
| 208 |  |  | if(tmpIter != end_) { | 
| 209 | gezelter | 507 | std::insert_iterator<std::string> insertIter(result, result.begin()); | 
| 210 | gezelter | 246 |  | 
| 211 | gezelter | 507 | while(tmpIter != end_ && isDelimiter(*tmpIter)) { | 
| 212 | gezelter | 246 |  | 
| 213 | gezelter | 507 | if (returnTokens_) { | 
| 214 |  |  | *insertIter++ = *tmpIter++; | 
| 215 |  |  | return result; | 
| 216 |  |  | } | 
| 217 | gezelter | 246 |  | 
| 218 | gezelter | 507 | ++tmpIter; | 
| 219 |  |  | } | 
| 220 | gezelter | 246 |  | 
| 221 | gezelter | 507 | while (tmpIter != end_ && !isDelimiter(*tmpIter)) { | 
| 222 |  |  | *insertIter++ = *tmpIter++; | 
| 223 |  |  | } | 
| 224 | gezelter | 246 | } | 
| 225 |  |  |  | 
| 226 |  |  | return result; | 
| 227 | gezelter | 507 | } | 
| 228 | gezelter | 246 |  | 
| 229 | gezelter | 2045 | std::vector<std::string>  StringTokenizer::getAllTokens() { | 
| 230 | tim | 770 | std::vector<std::string> tokens; | 
| 231 |  |  | while (hasMoreTokens()) { | 
| 232 | gezelter | 2045 | tokens.push_back(nextToken()); | 
| 233 | tim | 770 | } | 
| 234 |  |  | return tokens; | 
| 235 | gezelter | 2045 | } | 
| 236 | gezelter | 507 | void StringTokenizer::convertFortranNumber(std::string& fortranNumber) { | 
| 237 | tim | 261 | std::string::iterator i; | 
| 238 |  |  | for(i = fortranNumber.begin(); i != fortranNumber.end(); ++i) { | 
| 239 | gezelter | 507 | if (*i == 'd' || *i == 'D') { | 
| 240 |  |  | *i = 'E'; | 
| 241 |  |  | } | 
| 242 | tim | 261 | } | 
| 243 | gezelter | 507 | } | 
| 244 | tim | 261 |  | 
| 245 | gezelter | 2045 | std::string  StringTokenizer::getRemainingString() { | 
| 246 |  |  | std::string result; | 
| 247 |  |  | std::string::const_iterator tmpIter = currentPos_; | 
| 248 |  |  | if(tmpIter != end_) { | 
| 249 |  |  | std::insert_iterator<std::string> insertIter(result, result.begin()); | 
| 250 |  |  |  | 
| 251 |  |  | while (tmpIter != end_) { | 
| 252 |  |  | *insertIter++ = *tmpIter++; | 
| 253 |  |  | } | 
| 254 |  |  | } | 
| 255 |  |  |  | 
| 256 |  |  | return result; | 
| 257 |  |  | } | 
| 258 |  |  |  | 
| 259 |  |  |  | 
| 260 | gezelter | 1390 | }//end namespace OpenMD | 
| 261 | gezelter | 246 |  |