| 6 |  | * redistribute this software in source and binary code form, provided | 
| 7 |  | * that the following conditions are met: | 
| 8 |  | * | 
| 9 | < | * 1. Acknowledgement of the program authors must be made in any | 
| 10 | < | *    publication of scientific results based in part on use of the | 
| 11 | < | *    program.  An acceptable form of acknowledgement is citation of | 
| 12 | < | *    the article in which the program was described (Matthew | 
| 13 | < | *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher | 
| 14 | < | *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented | 
| 15 | < | *    Parallel Simulation Engine for Molecular Dynamics," | 
| 16 | < | *    J. Comput. Chem. 26, pp. 252-271 (2005)) | 
| 17 | < | * | 
| 18 | < | * 2. Redistributions of source code must retain the above copyright | 
| 9 | > | * 1. Redistributions of source code must retain the above copyright | 
| 10 |  | *    notice, this list of conditions and the following disclaimer. | 
| 11 |  | * | 
| 12 | < | * 3. Redistributions in binary form must reproduce the above copyright | 
| 12 | > | * 2. Redistributions in binary form must reproduce the above copyright | 
| 13 |  | *    notice, this list of conditions and the following disclaimer in the | 
| 14 |  | *    documentation and/or other materials provided with the | 
| 15 |  | *    distribution. | 
| 28 |  | * arising out of the use of or inability to use software, even if the | 
| 29 |  | * University of Notre Dame has been advised of the possibility of | 
| 30 |  | * such damages. | 
| 31 | + | * | 
| 32 | + | * SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your | 
| 33 | + | * research, please cite the appropriate papers when you publish your | 
| 34 | + | * work.  Good starting points are: | 
| 35 | + | * | 
| 36 | + | * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). | 
| 37 | + | * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). | 
| 38 | + | * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). | 
| 39 | + | * [4]  Vardeman & Gezelter, in progress (2009). | 
| 40 |  | */ | 
| 41 | < |  | 
| 41 | > |  | 
| 42 | > | #include <algorithm> | 
| 43 |  | #include "utils/StringUtils.hpp" | 
| 44 |  |  | 
| 45 | < | namespace oopse { | 
| 45 | > | namespace OpenMD { | 
| 46 |  | std::string UpperCase(const std::string& S) { | 
| 47 |  | std::string uc = S; | 
| 48 |  | unsigned int n = uc.size(); | 
| 91 |  | return (str); | 
| 92 |  | } | 
| 93 |  |  | 
| 94 | < | int findBegin(std::istream &theStream, char* startText ){ | 
| 94 | > | int findBegin(std::istream &theStream, const char* startText ){ | 
| 95 |  | const int MAXLEN = 1024; | 
| 96 |  | char readLine[MAXLEN]; | 
| 97 |  | int foundText = 0; | 
| 179 |  | return 0; | 
| 180 |  | } | 
| 181 |  |  | 
| 182 | < | std::string OOPSE_itoa(int value, unsigned int base) { | 
| 182 | > | std::string OpenMD_itoa(int value, unsigned int base) { | 
| 183 |  | const char digitMap[] = "0123456789abcdef"; | 
| 184 |  | std::string buf; | 
| 185 |  |  | 
| 234 |  | return result; | 
| 235 |  | } | 
| 236 |  |  | 
| 237 | + | bool CaseInsensitiveEquals(const char ch1, const char ch2) { | 
| 238 | + | return std::toupper((unsigned char)ch1) == std::toupper((unsigned char)ch2); | 
| 239 |  | } | 
| 240 | + |  | 
| 241 | + | size_t CaseInsensitiveFind(const std::string& str1, const std::string& str2) { | 
| 242 | + | std::string::const_iterator pos = std::search(str1.begin(), str1.end(), str2.begin(), str2.end(), CaseInsensitiveEquals); | 
| 243 | + | if (pos == str1.end()) | 
| 244 | + | return std::string::npos; | 
| 245 | + | else | 
| 246 | + | return pos - str1.begin(); | 
| 247 | + | } | 
| 248 | + |  | 
| 249 | + | } |