a bunch of hacks for the twoChain systems
fixed the "Sudden Death" bug. The box was not switching between orthorhombic and non-orthorhombic wrapping correctly. we added a fabs() to the check.which should fix it.
some work on trying to find the compression bug
begun work on removing templates and most of standard template library from OOPSE.
started work on template removal.
This commit was manufactured by cvs2svn to create branch 'new-templateless'.
started work on template removal
This commit was manufactured by cvs2svn to create branch 'no-template- branch'.
This commit was manufactured by cvs2svn to create branch 'templatesBranch10-28-03'.
Matt Meineke's dissertation Files
The OOPSE paper
Midwest Theoritcal Conference 2003
a generic template for parseing command line options.
New OOPSE Tree
this is an inital attempt to implement the new fortran interfaces
some intial version bookeeping
This commit was manufactured by cvs2svn to create branch 'stable-0_5'.
This commit was manufactured by cvs2svn to create branch 'stable-05'.
the 1st paper based on our lipidModel
This is the mpi version of simBASS
This commit was manufactured by cvs2svn to create branch 'serial-branch'.
my Canidacy paper
A pair of utilities to turn an xyz file into a sequence of povray rendered images.
This is the original proposal I gave in 2001
This is the RSA paper published in 2001
Matt's canidacy presentation
little utility for catting together dump files.
A half polished version of props
Counts the number of frames in a dump or xyz
tools for analyzing BASS simulation dumps
runs a simulation from a BASS file
translates BASS dumps to xyz files
makes a square lipid configuration
makes a square lipid configuration
forcefield parameter files for libmdtools
everything you need to make libmdtools
Standard project directories initialized by cvs2svn.