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Matt Meineke's dissertation Files
The OOPSE paper
Midwest Theoritcal Conference 2003
a generic template for parseing command line options.
New OOPSE Tree
this is an inital attempt to implement the new fortran interfaces
some intial version bookeeping
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the 1st paper based on our lipidModel
This is the mpi version of simBASS
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my Canidacy paper
A pair of utilities to turn an xyz file into a sequence of povray rendered images.
This is the original proposal I gave in 2001
This is the RSA paper published in 2001
Matt's canidacy presentation
little utility for catting together dump files.
A half polished version of props
Counts the number of frames in a dump or xyz
tools for analyzing BASS simulation dumps
runs a simulation from a BASS file
translates BASS dumps to xyz files
makes a square lipid configuration
makes a square lipid configuration
forcefield parameter files for libmdtools
everything you need to make libmdtools
Standard project directories initialized by cvs2svn.