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root/group/branches/new_design/OOPSE-2.0/src/integrators/NVE.cpp
Revision: 1756
Committed: Thu Nov 18 23:26:27 2004 UTC (19 years, 7 months ago) by tim
File size: 4624 byte(s)
Log Message:
adding DUFF parser

File Contents

# User Rev Content
1 tim 1722 /*
2     * Copyright (C) 2000-2004 Object Oriented Parallel Simulation Engine (OOPSE) project
3     *
4     * Contact: oopse@oopse.org
5     *
6     * This program is free software; you can redistribute it and/or
7     * modify it under the terms of the GNU Lesser General Public License
8     * as published by the Free Software Foundation; either version 2.1
9     * of the License, or (at your option) any later version.
10     * All we ask is that proper credit is given for our work, which includes
11     * - but is not limited to - adding the above copyright notice to the beginning
12     * of your source code files, and to any copyright notice that you may distribute
13     * with programs based on this work.
14     *
15     * This program is distributed in the hope that it will be useful,
16     * but WITHOUT ANY WARRANTY; without even the implied warranty of
17     * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
18     * GNU Lesser General Public License for more details.
19     *
20     * You should have received a copy of the GNU Lesser General Public License
21     * along with this program; if not, write to the Free Software
22     * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
23     *
24     */
25    
26     /**
27     * @file NVE.cpp
28     * @author tlin
29     * @date 11/08/2004
30     * @time 15:13am
31     * @version 1.0
32     */
33    
34     #include "integrators/NVE.hpp"
35     namespace oopse {
36    
37     //register the creator to IntegratorFactory
38     REGISTER_CREATOR(IntegratorFactory, "NVE", NVE);
39    
40 tim 1756 NVE::NVE(SimInfo* info) : VelocityVerletIntegrator(info){
41 tim 1722
42     }
43    
44 tim 1756 void NVE::moveA(){
45 tim 1726 typename SimInfo::MoleculeIterator i;
46 tim 1722 std::vector<StuntDouble*>::iterator j;
47     Molecule* mol;
48     StuntDouble* integrableObject;
49     Vector3d vel;
50     Vector3d pos;
51     Vector3d frc;
52     Vector3d Tb;
53     Vector3d ji;
54     double mass;
55    
56 tim 1756 for (mol = info_->beginMolecule(i); mol != NULL; mol = info_->nextMolecule(i)) {
57 tim 1722 for (integrableObject = mol->beginIntegrableObject(j); integrableObject != NULL;
58     integrableObject = mol->nextIntegrableObject(j)) {
59    
60     vel =integrableObject->getVel();
61     pos = integrableObject->getPos();
62     frc = integrableObject->getFrc();
63     mass = integrableObject->getMass();
64    
65     // velocity half step
66     vel += (halfStep /mass * UnitConstant::eConvert) * frc;
67    
68     // position whole step
69     pos += fullStep * vel;
70    
71     integrableObject->setVel(vel);
72     integrableObject->setPos(pos);
73    
74     if (integrableObject->isDirectional()){
75    
76     // get and convert the torque to body frame
77    
78     Tb = integrableObject->lab2Body(integrableObject->getTrq());
79    
80     // get the angular momentum, and propagate a half step
81    
82     ji = integrableObject->getJ();
83    
84     ji += (halfStep * UnitConstant::eConvert) * Tb;
85    
86     this->rotationPropagation( integrableObject, ji );
87    
88     integrableObject->setJ(ji);
89     }
90    
91    
92     }
93 tim 1756 } //end for(mol = info_->beginMolecule(i))
94 tim 1722
95     constraintAlgorithm->doConstrainA();
96    
97     }
98    
99 tim 1756 void NVE::moveB(){
100 tim 1726 typename SimInfo::MoleculeIterator i;
101 tim 1722 std::vector<StuntDouble*>::iterator j;
102     Molecule* mol;
103     StuntDouble* integrableObject;
104     Vector3d vel;
105     Vector3d frc;
106     Vector3d Tb;
107     Vector3d ji;
108     double mass;
109    
110 tim 1756 for (mol = info_->beginMolecule(i); mol != NULL; mol = info_->nextMolecule(i)) {
111 tim 1722 for (integrableObject = mol->beginIntegrableObject(j); integrableObject != NULL;
112     integrableObject = mol->nextIntegrableObject(j)) {
113    
114     vel =integrableObject->getVel();
115     frc = integrableObject->getFrc();
116     mass = integrableObject->getMass();
117    
118     // velocity half step
119     vel += (halfStep /mass * UnitConstant::eConvert) * frc;
120    
121     integrableObject->setVel(vel);
122    
123     if (integrableObject->isDirectional()){
124    
125     // get and convert the torque to body frame
126    
127     Tb = integrableObject->lab2Body(integrableObject->getTrq());
128    
129     // get the angular momentum, and propagate a half step
130    
131     ji = integrableObject->getJ();
132    
133     ji += (halfStep * UnitConstant::eConvert) * Tb;
134    
135     integrableObject->setJ(ji);
136     }
137    
138    
139     }
140 tim 1756 } //end for(mol = info_->beginMolecule(i))
141 tim 1722
142    
143     constraintAlgorithm->doConstrainB();
144    
145     }
146    
147 tim 1756
148     void NVE::calcConservedQuantity() {
149    
150     }
151    
152 tim 1722 } //end namespace oopse

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