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Comparing:
trunk/OOPSE-3.0/make/Makefile.in (file contents), Revision 1525 by tim, Tue Oct 5 19:35:59 2004 UTC vs.
branches/new_design/OOPSE-3.0/make/Makefile.in (file contents), Revision 1914 by tim, Tue Jan 11 15:46:22 2005 UTC

# Line 34 | Line 34 | IS_UNIX=1
34   #
35   #---------------------------------------------------------------------------
36   IS_UNIX=1
37 < #packages to be made
38 < Packages = \
37 >
38 > #packages containing libraries
39 > PackageLibs = \
40          utils \
41 +        visitors \
42          math \
43          types \
44          primitives \
43 –        visitors \
45          UseTheForce/DarkSide \
46          UseTheForce \
47          brains \
48          io \
49 <        integrators \
50 <        minimizers \
51 <        constraints \
52 <        profiling \
52 <        restraints \
49 >        integrators\
50 >
51 > #packages containing applications
52 > Applications = \
53          applications/oopse \
54          applications/dump2Xyz \
55 <        applications/simpleBuilder \
55 >        applications/simpleBuilder
56  
57 < #packages contain libraries
58 < PackageLibs = \
59 <        utils \
60 <        math \
61 <        types \
62 <        primitives \
63 <        visitors \
64 <        UseTheForce/DarkSide \
65 <        UseTheForce \
66 <        brains \
67 <        io \
68 <        integrators \
69 <        minimizers \
70 <        constraints \
71 <        profiling \
72 <        restraints \
57 > Samples = \
58 >        samples/argon \
59 >        samples/water/dimer \
60 >        samples/water/spce \
61 >        samples/water/ssd \
62 >        samples/water/ssde \
63 >        samples/water/tip3p_ice \
64 >        samples/water/tip4p \
65 >        samples/lipid \
66 >        samples/alkane \
67 >        samples/minimizer \
68 >        samples/metals \
69 >        samples/zcons \
70  
71   IncludeDirs = \
72          @SPRNG_INC_DIR@ \
# Line 84 | Line 81 | LinkOptions = \
81          @MPI_LIB@ \
82          @MPI_F90_LIB@
83  
87 – LinkOptions = \
88 –        @F90LIBS@
89 –
84   OopseHome       = @OOPSE_HOME@
85 < ForceParamDir   = @OOPSE_HOME@/share/forceFields/
86 < SampleSimDir    = @OOPSE_HOME@/share/samples/
85 > ForceParamDir   = $(OopseHome)/share/forceFields
86 > SampleSimDir    = $(OopseHome)/share/samples
87 > InstallBinDir   = $(OopseHome)/bin
88 > DocDir          = $(OopseHome)/doc
89   FrcDeclare      = -DFRC_PATH="$(ForceParamDir)"
90 + F90Declare      = -D__FORTRAN90
91   ParallelDeclare = -DIS_MPI
92   UseMPI          = @USE_MPI@
93 + ModuleCase      = @F90_MODULE_NAMES@
94 + ModSuffix       = @MOD@
95 + LinkOptions = \
96 +        @F90LIBS@
97  
98 + ParallelLinkOptions = \
99 +        @F90LIBS@
100 +
101 +
102   #---------------------------------------------------------------------------
103   #
104   #  Directories
# Line 104 | Line 109 | ParallelLibDir    = $(DEV_ROOT)/MPIlib
109   TargetDir         = $(DEV_ROOT)/obj
110   ParallelTargetDir = $(DEV_ROOT)/MPIobj
111   LibDir            = $(DEV_ROOT)/lib
107 – ParallelLibDir    = $(DEV_ROOT)/MPIlib
112   MakeDir           = $(DEV_ROOT)/make
113   BinDir            = $(DEV_ROOT)/bin
114   DocsDir           = $(DEV_ROOT)/docs
115   CurrentDir        = $(CURDIR)
116 + CombinedStaticLib = $(LibDir)/libOOPSE.a
117 + CombinedParallelStaticLib = $(LibDir)/libOOPSE_MPI.a
118  
119   ifdef Source
120   #get the relative path of current package to source directory
# Line 123 | Line 129 | PackageList              = $(Packages) $(JavaPackages)
129   PackageParallelTargetDir = $(ParallelTargetDir)
130   JavaMainClass            = $(subst /,.,$(Package)).$(Main)
131   else
132 < PackageList              = $(Packages) $(JavaPackages)
132 > PackageList              = $(PackageLibs) $(JavaPackages) $(Applications)
133   endif
134  
135   PackageListLoop          = $(patsubst %,$(SourceDir)/%/.loop,$(PackageList))
# Line 209 | Line 215 | ifneq  "$(words $(ObjectFiles) $(ParallelObjectFiles))
215      Executable             = $(BinDir)/$(Main)
216      ParallelExecutable     = $(BinDir)/$(Main)_MPI
217    else
218 <    SharedLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package))).so
219 <    StaticLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package))).a
220 <    ParallelSharedLibrary  = $(ParallelLibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package))).so
221 <    ParallelStaticLibrary  = $(ParallelLibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package))).a
218 >    SharedLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.so
219 >    StaticLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.a
220 >    ParallelSharedLibrary  = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_MPI.so
221 >    ParallelStaticLibrary  = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_MPI.a
222    endif
223   endif
224 +
225   #
226   # Misc
227   #
# Line 222 | Line 229 | ParallelLibDirs  = -L$(ParallelLibDir)  $(LibraryDirs:
229   JavaPackageNames = $(subst /,.,$(JavaPackages))
230   IncludePath      = -I$(SourceDir) $(IncludeDirs:%=-I%)
231   LibDirs          = -L$(LibDir)    $(LibraryDirs:%=-L%)
232 < ParallelLibDirs  = -L$(ParallelLibDir)  $(LibraryDirs:%=-L%)
233 < LocalLibs        = $(subst /,,$(patsubst %, oopse_%, $(PackageLibs)))
227 < ParallelLocalLibs= $(subst /,,$(patsubst %, oopse_%, $(PackageLibs)))
232 > LocalLibs        = $(subst /,,$(patsubst %, oopse_%_UP, $(PackageLibs)))
233 > ParallelLocalLibs= $(subst /,,$(patsubst %, oopse_%_MPI, $(PackageLibs)))
234   LibList          = $(LocalLibs:%=-l%) $(Libraries)
235 + LibNames         = $(LocalLibs:%=$(LibDir)/lib%.a)
236   ParallelLibList  = $(ParallelLocalLibs:%=-l%) $(Libraries)
237 + ParallelLibNames = $(ParallelLocalLibs:%=$(LibDir)/lib%.a)
238  
239  
240   #---------------------------------------------------------------------------
# Line 235 | Line 243 | Move                   = mv
243   #
244   #---------------------------------------------------------------------------
245   Print                  = @echo
246 < Move                   = mv
246 > Move                   = mv -f
247   Copy                   = cp
248   CCompiler              = @CC@
249   CppCompiler            = @CXX@
250   Linker                 = @CXX@
251   MakeDepend             = makedepend
252 < Install                = @INSTALL@
252 > INSTALL                = @INSTALL@
253   InstallProgram         = @INSTALL_PROGRAM@
254   InstallData            = @INSTALL_DATA@
255 < MakeDir                = @MKINSTALLDIRS@
255 > MkDir                = @MKINSTALLDIRS@
256   Delete                 = rm -fr
257   StaticArchiver         = @AR@
258   DynamicArchiver        = @CC@
# Line 262 | Line 270 | Lex                    = @LEX@
270   List                   = cat
271   Yacc                   = @YACC@
272   Lex                    = @LEX@
273 + Ranlib                 = @RANLIB@
274 + Doxygen                = @DOXYGEN@
275  
266 –
276   MakeOptions            = -k
277   MakeDependOptions      =
278   StaticArchiverOptions  = rc
# Line 272 | Line 281 | COptions               = $(FrcDeclare)
281   JniOptions             =
282   RmiOptions             = -d $(TargetDir) -classpath $(ClassPath) \
283                           -sourcepath $(SourceDir)
284 < COptions               = $(FrcDeclare)
285 < CParallelOptions       = $(FrcDeclare) $(ParallelDeclare)
286 < CppOptions             = $(FrcDeclare)
287 < CppParallelOptions     = $(FrcDeclare) $(ParallelDeclare)
284 > COptions               = $(FrcDeclare) @CFLAGS@
285 > CParallelOptions       = $(FrcDeclare) $(ParallelDeclare) @CFLAGS@
286 > CppOptions             = $(FrcDeclare) @CXXFLAGS@
287 > CppParallelOptions     = $(FrcDeclare) $(ParallelDeclare) @CXXFLAGS@
288   FortranOptions         =
289 < F90Options             =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) -module $(TargetDir)
290 < F90ParallelOptions     =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) -module $(ParallelTargetDir)  @PREPDEFFLAG@$(ParallelDeclare)
289 > F90Options             =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(TargetDir)
290 > F90ParallelOptions     =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir)  @PREPDEFFLAG@$(ParallelDeclare)
291   JavaCompilerOptions    = -d $(TargetDir) -classpath $(ClassPath) \
292                           -sourcepath $(SourceDir) -deprecation
293   JavaRunOptions         = -classpath $(ClassPath)
# Line 304 | Line 313 | Space                  = $(Empty) $(Empty)
313  
314   #---------------------------------------------------------------------------
315   #
316 + #  Install
317 + #
318 + #---------------------------------------------------------------------------
319 +
320 + ifneq "$(words $(SampleFiles))" "0"
321 +  MySample                 = $(subst $(shell cd $(DEV_ROOT)/samples; pwd)/,,$(CurrentDir))
322 +  MyInstallDir             = $(SampleSimDir)/$(MySample)
323 +  InstallFiles             = $(SampleFiles)
324 +  InstallCommand           = $(InstallData)
325 + endif
326 +
327 + ifneq "$(words $(Main))" "0"
328 +  MyInstallDir             = $(InstallBinDir)
329 +  ifeq "$(UseMPI)" "yes"
330 +    InstallFiles             = $(Executable) $(ParallelExecutable)
331 +  else
332 +    InstallFiles             = $(Executable)
333 +  endif
334 +  InstallCommand           = $(InstallProgram)
335 + endif
336 +
337 + ifneq "$(words $(ForcefieldFiles))" "0"
338 +  MyInstallDir             = $(ForceParamDir)
339 +  InstallFiles             = $(ForcefieldFiles)
340 +  InstallCommand           = $(InstallData)
341 + endif
342 +
343 + ifneq "$(words $(InstallFiles))" "0"
344 +  InstallList            =
345 + else
346 +  InstallList            = $(patsubst %,$(DEV_ROOT)/%,$(Samples)) $(DEV_ROOT)/forceFields $(patsubst %, $(SourceDir)/%,$(Applications))
347 + endif
348 +
349 + InstallListLoop          = $(patsubst %,$(SourceDir)/%/.install,$(PackageList))  $(patsubst %,%/.install,$(InstallList))
350 +
351 +
352 +
353 + #---------------------------------------------------------------------------
354 + #
355   # Rules
356   #
357   #---------------------------------------------------------------------------
# Line 369 | Line 417 | $(PackageTargetDir)/%.o : %.F90
417   # .F90 -> .o
418   $(PackageTargetDir)/%.o : %.F90
419          $(F90Compiler) $(F90Options) $(IncludePath) -c $< -o $@
420 +        if test -n "`ls *.$(ModSuffix)`"; then \
421 +          $(Move) `ls *.$(ModSuffix)` $(PackageTargetDir);\
422 +        fi
423  
424   $(PackageParallelTargetDir)/%.o : %.F90
425          $(F90Compiler) $(F90ParallelOptions) $(IncludePath) -c $< -o $@
426 +        if test -n "`ls *.$(ModSuffix)`"; then \
427 +          $(Move) "`ls *.$(ModSuffix)`" (PackageParallelTargetDir);\
428 +        fi
429  
430   ifeq "$(UseMPI)" "yes"
431   %.o : %.F90
432          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
433 +        if test -f *.$(ModSuffix); then \
434 +          $(Move) *.$(ModSuffix) $(PackageTargetDir);\
435 +        fi
436 +
437          $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
438 +        if test -f *.$(ModSuffix); then \
439 +          $(Move) *.$(ModSuffix) $(PackageParallelTargetDir);\
440 +        fi
441 +
442   else
443   %.o : %.F90
444          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
445 +        if test -f *.$(ModSuffix); then \
446 +          $(Move) *.$(ModSuffix) $(PackageTargetDir);\
447 +        fi
448 +
449   endif
450  
451  
# Line 417 | Line 483 | $(LibDir)/%.a : $(ObjectFiles)
483  
484   # .o -> .a
485  
486 < $(LibDir)/%.a : $(ObjectFiles)
486 > $(LibDir)/%_UP.a : $(ObjectFiles)
487          $(StaticArchiver) $(StaticArchiverOptions) $@ $(ObjectFiles)
488 +        @touch $(LibDir)/.stamp_UP
489  
490 < $(ParallelLibDir)/%.a: $(ParallelObjectFiles)
490 > $(LibDir)/%_MPI.a: $(ParallelObjectFiles)
491          $(StaticArchiver) $(StaticArchiverOptions) $@ $(ParallelObjectFiles)
492 +        @touch $(LibDir)/.stamp_MPI
493  
494 < ifeq "$(UseMPI)" "yes"
427 < %.a : $(ObjectFiles) $(ParallelObjectFiles)
494 > %_UP.a : $(ObjectFiles)
495          $(MAKE) $(MakeOptions) $(LibDir)/$@
496 <        $(MAKE) $(MakeOptions) $(ParallelLibDir)/$@
497 < else
431 < %.a : $(ObjectFiles)
496 >
497 > %_MPI.a : $(ParallelObjectFiles)
498          $(MAKE) $(MakeOptions) $(LibDir)/$@
433 – endif
499  
500   # .o -> .so
501 < $(LibDir)/%.so : $(ObjectFiles)
501 > $(LibDir)/%_UP.so : $(ObjectFiles)
502          $(DynamicArchiver) $(ObjectFiles) $(DynamicArchiverOptions) -o $@
503  
504 < $(ParallelLibDir)/%.so : $(ParallelObjectFiles)
504 > $(LibDir)/%_MPI.so : $(ParallelObjectFiles)
505          $(DynamicArchiver) $(ParallelObjectFiles) $(DynamicArchiverOptions) -o $@
506  
507 < ifeq "$(UseMPI)" "yes"
443 < %.so : $(ObjectFiles) $(ParallelObjectFiles)
507 > %_UP.so : $(ObjectFiles)
508          $(MAKE) $(MakeOptions) $(LibDir)/$@
509 <        $(MAKE) $(MakeOptions) $(ParallelLibDir)/$@
510 < else
447 < %.so : $(ObjectFiles)
509 >
510 > %_MPI.so : $(ParallelObjectFiles)
511          $(MAKE) $(MakeOptions) $(LibDir)/$@
449 – endif
512  
513   # .class -> .jar
514   $(LibDir)/%.jar : $(JavaClassFiles) $(OtherTargetFiles)
# Line 480 | Line 542 | $(PackageTargetDir)/%_Skel.class : $(PackageTargetDir)
542   %_Skel.class : %.class
543          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
544  
545 + document :
546 +        $(Print) Generate Documentation for OOPSE-2.0
547 +        @cd $(DEV_ROOT)/src    
548 +        $(Doxygen) $(DEV_ROOT)/make/Doxyfile
549 +
550 + #GUN make funtions to merge the libraries
551 + find_objs = $(shell $(StaticArchiver) -t $(1))
552 + extract_objs = $(shell $(StaticArchiver) -x $(1) $(call find_objs, $(1)))
553 + create_archive = $(shell  $(StaticArchiver) $(StaticArchiverOptions) $(2) $(call find_objs, $(1)))
554 + remove_objs = $(shell $(Delete) $(call find_objs, $(1)))
555 + do_create = $(call extract_objs,$(1))$(call create_archive,$(1),$(2))$(call remove_objs,$(1))  
556 +
557 + $(CombinedStaticLib) : $(LibDir)/.stamp_UP
558 +        $(Print) create $@      
559 +        $(foreach thisLib,$(LibNames),$(call do_create,$(thisLib),$@))
560 +        $(Ranlib) $(CombinedStaticLib)
561 +
562 + $(CombinedParallelStaticLib) : $(LibDir)/.stamp_MPI
563 +        $(Print) create $@
564 +        $(foreach thisLib,$(ParallelLibNames), $(call do_create, $(thisLib), $@))
565 +        $(Ranlib) $(CombinedParallelStaticLib)
566 +
567   # Executable
568 < $(Executable) : $(ObjectFiles)
569 <        $(Linker) $(ObjectFiles) $(LinkOptions) $(LibDirs) $(LibList) $(LibList) $(LibList) -o $@
568 > $(Executable) : $(CombinedStaticLib) $(ObjectFiles)
569 >        $(Linker) $(ObjectFiles) $(LinkOptions) $(LibDirs) $(CombinedStaticLib) $(Libraries) -o $@
570  
571 < $(ParallelExecutable) : $(ParallelObjectFiles)
572 <        $(Linker) $(ParallelObjectFiles) $(LinkOptions) $(ParallelLibDirs) $(ParallelLibList) $(ParallelLibList) $(ParallelLibList) -o $@
571 > $(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles)
572 >        $(Linker) $(ParallelObjectFiles) $(ParallelLinkOptions) $(LibDirs) $(CombinedParallelStaticLib) $(Libraries) -o $@
573  
574   # Anything else is just copied from source to target
575   $(PackageTargetDir)/% : $(PackageSourceDir)/%
# Line 498 | Line 582 | ifeq "$(UseMPI)" "yes"
582  
583   _all : _buildall
584  
585 + _buildall :
586   ifeq "$(UseMPI)" "yes"
587   _buildall : \
588          $(DependencyFile) \
# Line 562 | Line 647 | $(DependencyFile) : $(DerivedSource)
647          $(Print) $@
648          @cd $(PackageSourceDir)
649  
565 –        @touch Make.ctemp
566 –        @touch Make.ctemp
567 –
650   ifneq "$(words $(CppFiles))" "0"
651 <        $(CppCompiler) $(IncludePath) -MM $(CppFiles)  > Make.cpptemp
652 <        cat Make.cpptemp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/obj\/&/g' >> $(DependencyFile)
653 <        cat Make.cpptemp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/MPIobj\/&/g' >> $(DependencyFile)
651 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/' -MM $(CppFiles)>> Make.cpptemp
652 >        @cat Make.cpptemp  >> $(DependencyFile)
653 >        $(Delete) Make.cpptemp
654 >
655 >  ifeq "$(UseMPI)" "yes"
656 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CppFiles)>> Make.cpptemp
657 >        @cat Make.cpptemp  >> $(DependencyFile)
658 >        @$(Delete) Make.cpptemp
659 >  endif
660 >
661   endif
662  
663   ifneq "$(words $(CFiles))" "0"
664 <        $(CCompiler)   $(IncludePath) -MM $(CFiles) $(DerivedCFiles)   > Make.ctemp
665 <        cat Make.ctemp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/obj\/&/g' >> $(DependencyFile)
666 <        cat Make.ctemp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/MPIobj\/&/g' >> $(DependencyFile)
664 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/'  -MM $(CFiles) $(DerivedCFiles)  >> Make.ctemp
665 >        @cat Make.ctemp  >> $(DependencyFile)
666 >        $(Delete) Make.ctemp
667  
668 +  ifeq "$(UseMPI)" "yes"
669 +        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CFiles) $(DerivedCFiles)  >> Make.ctemp
670 +        @cat Make.ctemp  >> $(DependencyFile)
671 +        @$(Delete) Make.ctemp
672 +  endif
673 +
674   endif
675  
676   ifneq "$(words $(F90Files))" "0"
677 <        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(DEV_ROOT)/obj/' -D__FORTRAN90  $(F90Files) > Make.ftemp
678 <        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(DEV_ROOT)/MPIobj/' -DIS_MPI -D__FORTRAN90  $(F90Files) >> Make.ftemp
679 <        cat Make.ftemp >> $(DependencyFile)
677 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/' $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix) $(F90Files) > Make.ftemp
678 >        @cat Make.ftemp >> $(DependencyFile)
679 >        @$(Delete) Make.ftemp
680 >
681 >  ifeq "$(UseMPI)" "yes"
682 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix)  $(F90Files) >> Make.ftemp
683 >        @cat Make.ftemp >> $(DependencyFile)
684 >        @$(Delete) Make.ftemp
685 >  endif
686 >
687   endif
586 –        $(Delete) Make.cpptemp Make.ctemp Make.ftemp
688  
689   # make lib
690   lib    : $(PackageListLoop)
# Line 596 | Line 697 | jarsign : $(JarFile)
697   jarsign : $(JarFile)
698          $(JarSigner) -keystore GeoSoftKeystore $(JarFile) myself
699  
700 + #make install
701 + %.install :
702 +        @$(MAKE) $(MakeOptions) -C $(subst .install,,$@) _installall    
703 +
704 + install : $(InstallListLoop)
705 +        $(Print) Done Install
706 +
707 + _installall : _buildall _installdata
708 +
709 + $(MyInstallDir) :
710 +        $(MkDir) $@
711 +
712 + _installdata :  $(MyInstallDir)
713 +        $(Print) $(InstallFiles)
714 + ifneq "$(words $(InstallFiles))" "0"
715 +        $(InstallData) $(InstallFiles) $(MyInstallDir)
716 + endif      
717 +        
718   # make statistics
719   _statisticsall :
720 <        @$(Print) $(SourceFiles) >> $(DEV_ROOT)/files.tmp
720 >        @$(Print) $(patsubst %,$(CurrentDir)/%,$(SourceFiles)) >> $(DEV_ROOT)/files.tmp
721  
722   statistics : $(PackageListLoop)
723          @$(List) $(DEV_ROOT)/files.tmp | xargs $(WordCount) $(WordCountOptions)

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