--- branches/new_design/OOPSE-3.0/src/brains/SimCreator.cpp	2004/11/12 22:44:03	1737
+++ branches/new_design/OOPSE-3.0/src/brains/SimCreator.cpp	2004/11/13 05:08:12	1738
@@ -559,94 +559,9 @@ void SimCreator::setGlobalIndex(SimInfo *info) {
     std::copy(globalMolMembership.begin(), globalMolMembership.end(), 
         info->getGlobalMolMembershipPointer());
 #endif
-
-}
-
-
-void SimCreator::initFortran(SimInfo* info) {
-
-    //setup fortran simulation (Actually, in parallel version it will initialze the parallel part of fortran first)
-    info->update();
 
-    //notify fortran whether reaction field is used or not
-    //deprecated
-    int isError;
-    isError = 0;
-    initFortranFF( &useReactionField, &isError );
-
-    if(isError){
-        sprintf( painCave.errMsg,
-        "SimCreator::initFortran() error: There was an error initializing the forceField in fortran.\n" );
-        painCave.isFatal = 1;
-        simError();
-    }
-    
-    //figure out the cutoff radius and pass it to fortran
-    setCutoff(info);
 }
 
-void SimCreator::setCutoff(SimInfo* info) {
-    Globals* globals = info->getGlobals();
-    double rcut;  //cutoff radius
-    double rsw; //switching radius
-
-    simtype* st = info->getSimType();
-    
-    if (st->SIM_uses_Charges | st->SIM_uses_Dipoles | st->SIM_uses_RF) {
-        
-        if (!globals->haveRcut()){
-            sprintf(painCave.errMsg,
-                "SimCreator Warning: No value was set for the cutoffRadius.\n"
-                "\tOOPSE will use a default value of 15.0 angstroms"
-                "\tfor the cutoffRadius.\n");
-            painCave.isFatal = 0;
-            simError();
-            rcut = 15.0;
-        } else{
-            rcut = globals->getRcut();
-        }
-
-        if (!globals->haveRsw()){
-            sprintf(painCave.errMsg,
-                "SimCreator Warning: No value was set for switchingRadius.\n"
-                "\tOOPSE will use a default value of\n"
-                "\t0.95 * cutoffRadius for the switchingRadius\n");
-            painCave.isFatal = 0;
-            simError();
-            rsw = 0.95 * rcut;
-        } else{
-            rsw = globals->getRsw();
-        }
-
-    } else {
-        // if charge, dipole or reaction field is not used and the cutofff radius is not specified in
-        //meta-data file, the maximum cutoff radius calculated from forcefiled will be used
-        
-        if (globals->haveRcut()) {
-            rcut = globals->getRcut();
-        } else {
-            //set cutoff radius to the maximum cutoff radius based on atom types in the whole system
-            rcut = info->calcMaxCutoffRadius();
-        }
-
-        if (globals->haveRsw()) {
-            rsw  = globals->getRsw()
-        } else {
-            rsw = rcut;
-        }
-    
-    }
-    
-    //store them into Siminfo
-    info->setRcut(rcut);
-    info->setRsw(rsw);
-    
-    double rnblist = rcut + 1; // skin of neighbor list
-
-    //Pass these cutoff radius etc. to fortran. This function should be called once and only once
-    notifyFortranCutoffs(&rcut, &rsw, &rnblist);
-}
-
 void SimCreator::loadCoordinates(SimInfo* info) {
     Globals* globals;
     globals = info->getGlobals();