rename some files
types and primitives get built
UreyBradleyBend and GhostBend
more types stuff and Chebyshev Polynomial
add PolynomialBondType, PolynomialBendType, PolynomialTorsionType, HarmonicBendType and CharmmTorsionType. Need to refine the design and add document for them
Adding Polynomial class
another painful day (1) SimCreator, SimInfo, mpiSimulation (2) DumpReader, DumpWriter (InitializeFrom File will be removed) (3) ForceField (at least LJ) and BondType, BendType, TorsionType (4)Integrator (5)oopse.cpp (6)visitors & Dump2XYZ (7)SimpleBuilder (8)Constraint & ZConstraint
Molecule, Atom, DirectionalAtom, RigidBody and StuntDouble classes get compiled
This commit was manufactured by cvs2svn to create branch 'new_design'.
define name collision
add getArray function to RectMatrix and Vector classes
more work in Snapshot
Snapshot and SnapshotManager in progress
Math library pass the unit test
except diagonalize(), all of functions in math library pass the test
more bugs get fixed at math library
more bugs are fixed in Vector class
implement more test cases
more tests on math library
fix some bugs in Quaternion class
Your basic run of the mill real-valued versions of Y_l^m(\theta, \phi)
Working on getting Shapes into OOPSE
math library in progress
add quaternion class
fix incompatible declaration in jacobi
math library in progress
Matrix in progress, test in isOrthogonal of SquareMatrix is failed by some reasons
adding RectMatrix
refactory vector and matrix classes
Remove some Makefile.in
add Vector3d.hpp and Matrix3x3d.hpp
move mpiSimulation_module to DarkSide
define DEV_ROOT as relative path
change Makefile to relative path
*** empty log message ***
change the #include in source files
Import of OOPSE v. 2.0