MPI version is built
Fix a bug in calculating torque in rigid body
oopse get compiled, still has some linking problem
fix Thermo
Molecule, Atom, DirectionalAtom, RigidBody and StuntDouble classes get compiled
This commit was manufactured by cvs2svn to create branch 'new_design'.
add getArray function to RectMatrix and Vector classes
Snapshot and SnapshotManager in progress
Math library pass the unit test
except diagonalize(), all of functions in math library pass the test
more tests on math library
fix some bugs in Quaternion class
math library in progress
math library in progress
refactory vector and matrix classes
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