src/primitives/Bond.hpp

/*
 * Copyright (C) 2000-2004  Object Oriented Parallel Simulation Engine (OOPSE) project
 * 
 * Contact: oopse@oopse.org
 * 
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public License
 * as published by the Free Software Foundation; either version 2.1
 * of the License, or (at your option) any later version.
 * All we ask is that proper credit is given for our work, which includes
 * - but is not limited to - adding the above copyright notice to the beginning
 * of your source code files, and to any copyright notice that you may distribute
 * with programs based on this work.
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Lesser General Public License for more details.
 * 
 * You should have received a copy of the GNU Lesser General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 *
 */

/**
 * @file Bond.hpp
 * @author    tlin
 * @date  11/01/2004
 * @version 1.0
 */ 


#ifndef PRIMITIVES_BOND_HPP
#define PRIMITIVES_BOND_HPP

#include "primitives/Atom.hpp"
#include "types/BondType.hpp"

namespace oopse {

class Bond {
    public:
        Bond(Atom* atom1, Atom* atom2, BondType* bt) : atom1_(atom1), atom2_(atom2), bondType_(bt) {}

        void calcForce() {
            double len;
            double dvdr;
            Vector3d r12;
            Vector3d force;

            r12 = atom2_->getPos() - atom1_->getPos();
            len = r12.length();            
            bondType_->calcForce(len,  potential_, dvdr);

            force = r12 * (-dvdr / len);
            
            atom1_->addFrc(force);
            atom2_->addFrc(-force);
       }
        
        double getPotential() {
            return potential_;
        }

        Atom* getAtomA() {
            return atom1_;
        }

        Atom* getAtomB() {
            return atom2_;
        }

        BondType* getBondType() {
            return bondType_;
        }
    private:
        
        BondType* bondType_; /**< bond type */
        Atom* atom1_;
        Atom* atom2_;
        double potential_;
};    


} //end namespace oopse
#endif //PRIMITIVES_BOND_HPP
Revision:	1803
Committed:	Tue Nov 30 17:54:22 2004 UTC (19 years, 9 months ago) by tim
File size:	2411 byte(s)
Log Message:	more get fixed
#	User	Rev	Content
1	tim	1694	/*
2			* Copyright (C) 2000-2004 Object Oriented Parallel Simulation Engine (OOPSE) project
3			*
4			* Contact: oopse@oopse.org
5			*
6			* This program is free software; you can redistribute it and/or
7			* modify it under the terms of the GNU Lesser General Public License
8			* as published by the Free Software Foundation; either version 2.1
9			* of the License, or (at your option) any later version.
10			* All we ask is that proper credit is given for our work, which includes
11			* - but is not limited to - adding the above copyright notice to the beginning
12			* of your source code files, and to any copyright notice that you may distribute
13			* with programs based on this work.
14			*
15			* This program is distributed in the hope that it will be useful,
16			* but WITHOUT ANY WARRANTY; without even the implied warranty of
17			* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
18			* GNU Lesser General Public License for more details.
19			*
20			* You should have received a copy of the GNU Lesser General Public License
21			* along with this program; if not, write to the Free Software
22			* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
23			*
24			*/
25
26			/**
27			* @file Bond.hpp
28			* @author tlin
29			* @date 11/01/2004
30			* @version 1.0
31			*/
32
33
34			#ifndef PRIMITIVES_BOND_HPP
35			#define PRIMITIVES_BOND_HPP
36
37	tim	1782	#include "primitives/Atom.hpp"
38	tim	1695	#include "types/BondType.hpp"
39
40	tim	1694	namespace oopse {
41
42			class Bond {
43			public:
44	tim	1803	Bond(Atom* atom1, Atom* atom2, BondType* bt) : atom1_(atom1), atom2_(atom2), bondType_(bt) {}
45	tim	1694
46			void calcForce() {
47			double len;
48	tim	1747	double dvdr;
49	tim	1694	Vector3d r12;
50			Vector3d force;
51
52	tim	1747	r12 = atom2_->getPos() - atom1_->getPos();
53	tim	1694	len = r12.length();
54	tim	1747	bondType_->calcForce(len, potential_, dvdr);
55	tim	1694
56	tim	1747	force = r12 * (-dvdr / len);
57	tim	1694
58	tim	1747	atom1_->addFrc(force);
59			atom2_->addFrc(-force);
60	tim	1694	}
61
62			double getPotential() {
63	tim	1747	return potential_;
64	tim	1694	}
65
66	tim	1803	Atom* getAtomA() {
67			return atom1_;
68			}
69
70			Atom* getAtomB() {
71			return atom2_;
72			}
73
74			BondType* getBondType() {
75			return bondType_;
76			}
77	tim	1694	private:
78	tim	1747
79	tim	1694	BondType* bondType_; /*< bond type /
80	tim	1747	Atom* atom1_;
81			Atom* atom2_;
82			double potential_;
83	tim	1694	};
84
85
86
87			} //end namespace oopse
88			#endif //PRIMITIVES_BOND_HPP