| 1 |
#include "visitors/RigidBodyVisitor.hpp"
|
| 2 |
#include "primitives/RigidBody.hpp"
|
| 3 |
#include "math/MatVec3.h"
|
| 4 |
|
| 5 |
namespace oopse {
|
| 6 |
|
| 7 |
void LipidHeadVisitor::visit(RigidBody* rb){
|
| 8 |
Vector3d pos;
|
| 9 |
Vector3d u(0, 0, 1);
|
| 10 |
Vector3d newVec;
|
| 11 |
GenericData* data;
|
| 12 |
AtomData* atomData;
|
| 13 |
AtomInfo* atomInfo;
|
| 14 |
bool haveAtomData;
|
| 15 |
RotMat3x3d rotMatrix;
|
| 16 |
|
| 17 |
if(!canVisit(rb->getType()))
|
| 18 |
return;
|
| 19 |
|
| 20 |
pos = rb->getPos();
|
| 21 |
rotMatrix = rb->getA();
|
| 22 |
//matVecMul3(rotMatrix, u, newVec);
|
| 23 |
newVec = rotMatrix * u;
|
| 24 |
|
| 25 |
data = rb->getPropertyByName("ATOMDATA");
|
| 26 |
if(data != NULL){
|
| 27 |
|
| 28 |
atomData = dynamic_cast<AtomData*>(data);
|
| 29 |
if(atomData == NULL){
|
| 30 |
cerr << "can not get Atom Data from " << rb->getType() << endl;
|
| 31 |
atomData = new AtomData;
|
| 32 |
haveAtomData = false;
|
| 33 |
}
|
| 34 |
else
|
| 35 |
haveAtomData = true;
|
| 36 |
}
|
| 37 |
else{
|
| 38 |
atomData = new AtomData;
|
| 39 |
haveAtomData = false;
|
| 40 |
}
|
| 41 |
|
| 42 |
atomInfo = new AtomInfo;
|
| 43 |
atomInfo->AtomType = "X";
|
| 44 |
atomInfo->pos[0] = pos[0];
|
| 45 |
atomInfo->pos[1] = pos[1];
|
| 46 |
atomInfo->pos[2] = pos[2];
|
| 47 |
atomInfo->dipole[0] = newVec[0];
|
| 48 |
atomInfo->dipole[1] = newVec[1];
|
| 49 |
atomInfo->dipole[2] = newVec[2];
|
| 50 |
|
| 51 |
atomData->addAtomInfo(atomInfo);
|
| 52 |
|
| 53 |
if(!haveAtomData){
|
| 54 |
atomData->setID("ATOMDATA");
|
| 55 |
rb->addProperty(atomData);
|
| 56 |
}
|
| 57 |
|
| 58 |
}
|
| 59 |
|
| 60 |
void LipidHeadVisitor::addLipidHeadName(const string& name){
|
| 61 |
lipidHeadName.insert(name);
|
| 62 |
|
| 63 |
}
|
| 64 |
|
| 65 |
bool LipidHeadVisitor::canVisit(const string& name){
|
| 66 |
return lipidHeadName.find(name) != lipidHeadName.end() ? true : false;
|
| 67 |
|
| 68 |
}
|
| 69 |
|
| 70 |
const string LipidHeadVisitor::toString(){
|
| 71 |
char buffer[65535];
|
| 72 |
string result;
|
| 73 |
set<string>::iterator i;
|
| 74 |
|
| 75 |
sprintf(buffer ,"------------------------------------------------------------------\n");
|
| 76 |
result += buffer;
|
| 77 |
|
| 78 |
sprintf(buffer ,"Visitor name: %s\n", visitorName.c_str());
|
| 79 |
result += buffer;
|
| 80 |
|
| 81 |
//print the ignore type list
|
| 82 |
sprintf(buffer , "lipidHeadName list contains below types:\n");
|
| 83 |
result += buffer;
|
| 84 |
|
| 85 |
for(i = lipidHeadName.begin(); i != lipidHeadName.end(); ++i){
|
| 86 |
sprintf(buffer ,"%s\t", i->c_str());
|
| 87 |
result += buffer;
|
| 88 |
}
|
| 89 |
|
| 90 |
sprintf(buffer ,"\n");
|
| 91 |
result += buffer;
|
| 92 |
|
| 93 |
sprintf(buffer ,"------------------------------------------------------------------\n");
|
| 94 |
result += buffer;
|
| 95 |
|
| 96 |
return result;
|
| 97 |
|
| 98 |
}
|
| 99 |
|
| 100 |
void RBCOMVisitor::visit(RigidBody* rb){
|
| 101 |
AtomData* atomData;
|
| 102 |
AtomInfo* atomInfo;
|
| 103 |
Vector3d pos;
|
| 104 |
|
| 105 |
pos = rb->getPos();
|
| 106 |
atomInfo = new AtomInfo;
|
| 107 |
atomInfo->AtomType = "X";
|
| 108 |
atomInfo->pos[0] = pos[0];
|
| 109 |
atomInfo->pos[1] = pos[1];
|
| 110 |
atomInfo->pos[2] = pos[2];
|
| 111 |
atomInfo->dipole[0] = 0;
|
| 112 |
atomInfo->dipole[1] = 0;
|
| 113 |
atomInfo->dipole[2] = 0;
|
| 114 |
|
| 115 |
atomData = new AtomData;
|
| 116 |
atomData->setID("ATOMDATA");
|
| 117 |
atomData->addAtomInfo(atomInfo);
|
| 118 |
|
| 119 |
rb->addProperty(atomData);
|
| 120 |
}
|
| 121 |
|
| 122 |
const string RBCOMVisitor::toString(){
|
| 123 |
char buffer[65535];
|
| 124 |
string result;
|
| 125 |
|
| 126 |
sprintf(buffer ,"------------------------------------------------------------------\n");
|
| 127 |
result += buffer;
|
| 128 |
|
| 129 |
sprintf(buffer ,"Visitor name: %s\n", visitorName.c_str());
|
| 130 |
result += buffer;
|
| 131 |
|
| 132 |
//print the ignore type list
|
| 133 |
sprintf(buffer , "Visitor Description: add a pseudo atom at the center of the mass of the rigidbody\n");
|
| 134 |
result += buffer;
|
| 135 |
|
| 136 |
sprintf(buffer ,"------------------------------------------------------------------\n");
|
| 137 |
result += buffer;
|
| 138 |
|
| 139 |
return result;
|
| 140 |
|
| 141 |
}
|
| 142 |
|
| 143 |
|
| 144 |
}//namespace oopse
|
