remove using namespace std in .cpp file
adding qulified name prefix std
replace string by std::string
replace misuse of using namespace std in header files
add Electrostatic AtomType Section Parser
Molecule, Atom, DirectionalAtom, RigidBody and StuntDouble classes get compiled
This commit was manufactured by cvs2svn to create branch 'new_design'.
remove old Vector3d.hpp from application/simpleBuilder
STL next_permutation like next_combination is working
cleaning up
define DEV_ROOT as relative path
change Makefile to relative path
change directory structure of application. Every executable file is replaced in seperate directory