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#ifndef TYPES_ATOMTYPE_HPP |
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#define TYPES_ATOMTYPE_HPP |
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#include "math/SquareMatrix3.hpp" |
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#include <string> |
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#include "utils/PropertyMap.hpp" |
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#define __C |
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#include "types/AtomTypeProperties.h" |
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#include "UseTheForce/DarkSide/atype_interface.h" |
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using namespace std; |
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namespace oopse { |
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/** |
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* @class AtomType |
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* AtomType is what OOPSE looks to for unchanging data about an atom. |
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* Things that belong to AtomType are universal properties (i.e. does |
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* this atom have a Charge? What is it's mass?) Dynamic properties of |
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* an atom are not intended to be properties of an atom type |
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*/ |
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class AtomType{ |
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public: |
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AtomType(); |
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~AtomType(); |
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/** |
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* Finishes off the AtomType by communicating the logical portions of the |
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* structure to the Fortran atype module |
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* @class AtomType |
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* AtomType is what OOPSE looks to for unchanging data about an atom. |
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* Things that belong to AtomType are universal properties (i.e. does |
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* this atom have a Charge? What is it's mass_?) Dynamic properties of |
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* an atom are not intended to be properties of an atom type |
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*/ |
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void complete(); |
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void setMass(double m) { mass = m; } |
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double getMass(void) { return mass; } |
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class AtomType { |
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public: |
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void setIdent(int id) {atp.ident = id;} |
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int getIdent() {return atp.ident;} |
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void setLennardJones() { atp.is_LennardJones = 1; } |
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bool isLennardJones() { return atp.is_LennardJones; } |
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void setElectrostatic() { atp.is_Electrostatic = 1; } |
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bool isElectrostatic() { return atp.is_Electrostatic; } |
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void setSticky() { atp.is_Sticky = 1; } |
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bool isSticky() { return atp.is_Sticky; } |
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void setGayBerne() { atp.is_GayBerne = 1; } |
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bool isGayBerne() { return atp.is_GayBerne; } |
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void setEAM() { atp.is_EAM = 1; } |
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bool isEAM() { return atp.is_EAM; } |
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void setShape() { atp.is_Shape = 1; } |
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bool isShape() { return atp.is_Shape; } |
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void setCharge() { atp.is_Charge = 1; atp.is_Electrostatic = 1;} |
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bool isCharge() { return atp.is_Charge; } |
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void setDipole() { atp.is_Dipole = 1; atp.is_Electrostatic = 1;} |
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bool isDipole() { return atp.is_Dipole; } |
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Mat3x3d getI() { return I; } |
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void setI(Mat3x3d theI) { I = theI; } |
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private: |
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AtomTypeProperties atp; |
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PropertyMap pm; |
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double mass; |
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Mat3x3d I; |
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}; |
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AtomType(); |
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virtual ~AtomType() { } ; |
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virtual void complete(); |
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/** |
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* Finishes off the AtomType by communicating the logical portions of the |
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* structure to the Fortran atype module |
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*/ |
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void makeFortranAtomType(); |
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void setMass(double m) { |
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mass_ = m; |
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} |
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double getMass(void) { |
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return mass_; |
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} |
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void setIdent(int id) { |
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atp.ident = id; |
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} |
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int getIdent() { |
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return atp.ident; |
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} |
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void setName(const std::string&name) { |
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name_ = name; |
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} |
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std::string getName() { |
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return name_; |
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} |
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void setLennardJones() { |
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atp.is_LennardJones = 1; |
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} |
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bool isLennardJones() { |
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return atp.is_LennardJones; |
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} |
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bool isElectrostatic() { |
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return isCharge() || isMultipole(); |
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} |
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void setEAM() { |
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atp.is_EAM = 1; |
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} |
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bool isEAM() { |
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return atp.is_EAM; |
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} |
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void setCharge() { |
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atp.is_Charge = 1; |
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} |
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bool isCharge() { |
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return atp.is_Charge; |
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} |
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bool isDirectional() { |
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return atp.is_Directional; |
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} |
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bool isDipole() { |
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return atp.is_Dipole; |
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} |
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bool isQuadrupole() { |
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return atp.is_Quadrupole; |
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} |
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bool isMultipole() { |
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return isDipole() || isQuadrupole(); |
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} |
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bool isGayBerne() { |
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return atp.is_GayBerne; |
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} |
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bool isSticky() { |
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return atp.is_Sticky; |
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} |
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bool isShape() { |
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return atp.is_Shape; |
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} |
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//below functions are just forward functions |
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/** |
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* Adds property into property map |
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* @param genData GenericData to be added into PropertyMap |
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*/ |
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void addProperty(GenericData* genData); |
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/** |
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* Removes property from PropertyMap by name |
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* @param propName the name of property to be removed |
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*/ |
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void removeProperty(const std::string& propName); |
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/** |
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* clear all of the properties |
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*/ |
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void clearProperties(); |
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/** |
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* Returns all names of properties |
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* @return all names of properties |
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*/ |
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std::vector<std::string> getPropertyNames(); |
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/** |
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* Returns all of the properties in PropertyMap |
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* @return all of the properties in PropertyMap |
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*/ |
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std::vector<GenericData*> getProperties(); |
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/** |
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* Returns property |
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* @param propName name of property |
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* @return a pointer point to property with propName. If no property named propName |
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* exists, return NULL |
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*/ |
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GenericData* getPropertyByName(const std::string& propName); |
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protected: |
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AtomTypeProperties atp; |
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double mass_; |
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std::string name_; |
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private: |
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//prevent copy construction and copy assignment, since property map contains |
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//pointers which can not be copied and managered safely, except make the generic data |
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//at PropertyMap as copy on write shared pointer |
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AtomType(const AtomType&); |
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AtomType& operator=(const AtomType& atomType); |
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PropertyMap properties_; |
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}; |
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struct LJParam { |
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double epsilon; |
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double sigma; |
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}; |
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typedef SimpleTypeData<LJParam> LJParamGenericData; |
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struct EAMParam { |
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double latticeConstant; |
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int nrho; |
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double drho; |
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int nr; |
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double dr; |
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double rcut; |
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std::vector<double> rvals; |
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std::vector<double> rhovals; |
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std::vector<double> Frhovals; |
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}; |
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typedef SimpleTypeData<EAMParam> EAMParamGenericData; |
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} |
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#endif |