# | Line 35 | Line 35 | void SimInfo::setBox(double newBox[3]) { | |
---|---|---|
35 | } | |
36 | ||
37 | void SimInfo::setBox(double newBox[3]) { | |
38 | + | double smallestBox, maxCutoff; |
39 | + | int status; |
40 | box_x = newBox[0]; | |
41 | box_y = newBox[1]; | |
42 | box_z = newBox[2]; | |
43 | setFortranBoxSize(newBox); | |
44 | + | |
45 | + | smallestBox = box_x; |
46 | + | if (box_y < smallestBox) smallestBox = box_y; |
47 | + | if (box_z < smallestBox) smallestBox = box_z; |
48 | + | |
49 | + | maxCutoff = smallestBox / 2.0; |
50 | + | |
51 | + | if (rList > maxCutoff) { |
52 | + | sprintf( painCave.errMsg, |
53 | + | "New Box size is forcing neighborlist radius down to %lf\n", |
54 | + | maxCutoff ); |
55 | + | painCave.isFatal = 0; |
56 | + | simError(); |
57 | + | |
58 | + | rList = maxCutoff; |
59 | + | |
60 | + | sprintf( painCave.errMsg, |
61 | + | "New Box size is forcing cutoff radius down to %lf\n", |
62 | + | maxCutoff - 1.0 ); |
63 | + | painCave.isFatal = 0; |
64 | + | simError(); |
65 | + | |
66 | + | rCut = rList - 1.0; |
67 | + | |
68 | + | // list radius changed so we have to refresh the simulation structure. |
69 | + | refreshSim(); |
70 | + | } |
71 | + | |
72 | + | if (rCut > maxCutoff) { |
73 | + | sprintf( painCave.errMsg, |
74 | + | "New Box size is forcing cutoff radius down to %lf\n", |
75 | + | maxCutoff ); |
76 | + | painCave.isFatal = 0; |
77 | + | simError(); |
78 | + | |
79 | + | status = 0; |
80 | + | LJ_new_rcut(&rCut, &status); |
81 | + | if (status != 0) { |
82 | + | sprintf( painCave.errMsg, |
83 | + | "Error in recomputing LJ shifts based on new rcut\n"); |
84 | + | painCave.isFatal = 1; |
85 | + | simError(); |
86 | + | } |
87 | + | } |
88 | } | |
89 | ||
90 | void SimInfo::getBox(double theBox[3]) { | |
# | Line 83 | Line 129 | void SimInfo::refreshSim(){ | |
129 | simtype fInfo; | |
130 | int isError; | |
131 | int* excl; | |
132 | + | |
133 | + | fInfo.rrf = 0.0; |
134 | + | fInfo.rt = 0.0; |
135 | + | fInfo.dielect = 0.0; |
136 | ||
137 | fInfo.box[0] = box_x; | |
138 | fInfo.box[1] = box_y; | |
# | Line 90 | Line 140 | void SimInfo::refreshSim(){ | |
140 | ||
141 | fInfo.rlist = rList; | |
142 | fInfo.rcut = rCut; | |
93 | – | fInfo.rrf = ecr; |
94 | – | fInfo.rt = ecr - est; |
95 | – | fInfo.dielect = dielectric; |
143 | ||
144 | + | if( useDipole ){ |
145 | + | fInfo.rrf = ecr; |
146 | + | fInfo.rt = ecr - est; |
147 | + | if( useReactionField )fInfo.dielect = dielectric; |
148 | + | } |
149 | + | |
150 | fInfo.SIM_uses_PBC = usePBC; | |
151 | //fInfo.SIM_uses_LJ = 0; | |
152 | fInfo.SIM_uses_LJ = useLJ; | |
153 | fInfo.SIM_uses_sticky = useSticky; | |
154 | //fInfo.SIM_uses_sticky = 0; | |
155 | < | fInfo.SIM_uses_dipoles = useDipole; |
156 | < | //fInfo.SIM_uses_dipoles = 0; |
155 | > | //fInfo.SIM_uses_dipoles = useDipole; |
156 | > | fInfo.SIM_uses_dipoles = 0; |
157 | //fInfo.SIM_uses_RF = useReactionField; | |
158 | fInfo.SIM_uses_RF = 0; | |
159 | fInfo.SIM_uses_GB = useGB; |
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+ | Added lines |
< | Changed lines |
> | Changed lines |