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root/group/interfacial/interfacial.tex
Revision: 3721
Committed: Sat Feb 5 00:02:11 2011 UTC (13 years, 7 months ago) by skuang
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add force field papers

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# Content
1 \documentclass[11pt]{article}
2 \usepackage{amsmath}
3 \usepackage{amssymb}
4 \usepackage{setspace}
5 \usepackage{endfloat}
6 \usepackage{caption}
7 %\usepackage{tabularx}
8 \usepackage{graphicx}
9 \usepackage{multirow}
10 %\usepackage{booktabs}
11 %\usepackage{bibentry}
12 %\usepackage{mathrsfs}
13 %\usepackage[ref]{overcite}
14 \usepackage[square, comma, sort&compress]{natbib}
15 \usepackage{url}
16 \pagestyle{plain} \pagenumbering{arabic} \oddsidemargin 0.0cm
17 \evensidemargin 0.0cm \topmargin -21pt \headsep 10pt \textheight
18 9.0in \textwidth 6.5in \brokenpenalty=10000
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20 % double space list of tables and figures
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25 %\renewcommand\citemid{\ } % no comma in optional referenc note
26 \bibpunct{[}{]}{,}{s}{}{;}
27 \bibliographystyle{aip}
28
29 \begin{document}
30
31 \title{Simulating interfacial thermal conductance at metal-solvent
32 interfaces: the role of chemical capping agents}
33
34 \author{Shenyu Kuang and J. Daniel
35 Gezelter\footnote{Corresponding author. \ Electronic mail: gezelter@nd.edu} \\
36 Department of Chemistry and Biochemistry,\\
37 University of Notre Dame\\
38 Notre Dame, Indiana 46556}
39
40 \date{\today}
41
42 \maketitle
43
44 \begin{doublespace}
45
46 \begin{abstract}
47 The abstract version 2
48 \end{abstract}
49
50 \newpage
51
52 %\narrowtext
53
54 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
55 % BODY OF TEXT
56 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
57
58 \section{Introduction}
59
60 The intro.
61
62 \section{Methodology}
63 \subsection{Algorithm}
64 There have been many algorithms for computing thermal conductivity
65 using molecular dynamics simulations. However, interfacial conductance
66 is at least an order of magnitude smaller. This would make the
67 calculation even more difficult for those slowly-converging
68 equilibrium methods. Imposed-flux non-equilibrium
69 methods\cite{MullerPlathe:1997xw} have the flux set {\it a priori} and
70 the response of temperature or momentum gradients are easier to
71 measure than the flux, if unknown, and thus, is a preferable way to
72 the forward NEMD methods. Although the momentum swapping approach for
73 flux-imposing can be used for exchanging energy between particles of
74 different identity, the kinetic energy transfer efficiency is affected
75 by the mass difference between the particles, which limits its
76 application on heterogeneous interfacial systems.
77
78 The non-isotropic velocity scaling (NIVS)\cite{kuang:164101} approach in
79 non-equilibrium MD simulations is able to impose relatively large
80 kinetic energy flux without obvious perturbation to the velocity
81 distribution of the simulated systems. Furthermore, this approach has
82 the advantage in heterogeneous interfaces in that kinetic energy flux
83 can be applied between regions of particles of arbitary identity, and
84 the flux quantity is not restricted by particle mass difference.
85
86 The NIVS algorithm scales the velocity vectors in two separate regions
87 of a simulation system with respective diagonal scaling matricies. To
88 determine these scaling factors in the matricies, a set of equations
89 including linear momentum conservation and kinetic energy conservation
90 constraints and target momentum/energy flux satisfaction is
91 solved. With the scaling operation applied to the system in a set
92 frequency, corresponding momentum/temperature gradients can be built,
93 which can be used for computing transportation properties and other
94 applications related to momentum/temperature gradients. The NIVS
95 algorithm conserves momenta and energy and does not depend on an
96 external thermostat.
97
98 (wondering how much detail of algorithm should be put here...)
99
100 \subsection{Simulation Parameters}
101 Our simulation systems consists of metal gold lattice slab solvated by
102 organic solvents. In order to study the role of capping agents in
103 interfacial thermal conductance, butanethiol is chosen to cover gold
104 surfaces in comparison to no capping agent present.
105
106 The Au-Au interactions in metal lattice slab is described by the
107 quantum Sutton-Chen (QSC) formulation.\cite{PhysRevB.59.3527} The QSC
108 potentials include zero-point quantum corrections and are
109 reparametrized for accurate surface energies compared to the
110 Sutton-Chen potentials\cite{Chen90}.
111
112 Straight chain {\it n}-hexane and aromatic toluene are respectively
113 used as solvents. For hexane, both United-Atom\cite{TraPPE-UA.alkanes}
114 and All-Atom\cite{OPLSAA} force fields are used for comparison; for
115 toluene, United-Atom\cite{TraPPE-UA.alkylbenzenes} force fields are
116 used with rigid body constraints applied. (maybe needs more details
117 about rigid body)
118
119 Buatnethiol molecules are used as capping agent for some of our
120 simulations. United-Atom\cite{TraPPE-UA.thiols} and All-Atom models
121 are respectively used corresponding to the force field type of
122 solvent.
123
124 To describe the interactions between metal Au and non-metal capping
125 agent and solvent, we refer to Vlugt\cite{vlugt:cpc2007154} and derive
126 other interactions which are not parametrized in their work. (can add
127 hautman and klein's paper here and more discussion; need to put
128 aromatic-metal interaction approximation here)
129
130 \section{Computational Details}
131 Our simulation systems consists of a lattice Au slab with the (111)
132 surface perpendicular to the $z$-axis, and a solvent layer between the
133 periodic Au slabs along the $z$-axis. To set up the interfacial
134 system, the Au slab is first equilibrated without solvent under room
135 pressure and a desired temperature. After the metal slab is
136 equilibrated, United-Atom or All-Atom butanethiols are replicated on
137 the Au surface, each occupying the (??) among three Au atoms, and is
138 equilibrated under NVT ensemble. According to (CITATION), the maximal
139 thiol capacity on Au surface is $1/3$ of the total number of surface
140 Au atoms.
141
142 \cite{packmol}
143
144 \section{Acknowledgments}
145 Support for this project was provided by the National Science
146 Foundation under grant CHE-0848243. Computational time was provided by
147 the Center for Research Computing (CRC) at the University of Notre
148 Dame. \newpage
149
150 \bibliography{interfacial}
151
152 \end{doublespace}
153 \end{document}
154