23 |
|
\setlength{\belowcaptionskip}{30 pt} |
24 |
|
|
25 |
|
%\renewcommand\citemid{\ } % no comma in optional reference note |
26 |
< |
\bibpunct{[}{]}{,}{s}{}{;} |
27 |
< |
\bibliographystyle{aip} |
26 |
> |
\bibpunct{[}{]}{,}{n}{}{;} |
27 |
> |
\bibliographystyle{achemso} |
28 |
|
|
29 |
|
\begin{document} |
30 |
|
|
104 |
|
this phenomena at the molecular level. Recently, Hase and coworkers |
105 |
|
employed Non-Equilibrium Molecular Dynamics (NEMD) simulations to |
106 |
|
study thermal transport from hot Au(111) substrate to a self-assembled |
107 |
< |
monolayer of alkylthiolate with relatively long chain (8-20 carbon |
107 |
> |
monolayer of alkylthiol with relatively long chain (8-20 carbon |
108 |
|
atoms)\cite{hase:2010,hase:2011}. However, ensemble averaged |
109 |
|
measurements for heat conductance of interfaces between the capping |
110 |
|
monolayer on Au and a solvent phase has yet to be studied. |
111 |
< |
The relatively low thermal flux through interfaces is |
111 |
> |
The comparatively low thermal flux through interfaces is |
112 |
|
difficult to measure with Equilibrium MD or forward NEMD simulation |
113 |
|
methods. Therefore, the Reverse NEMD (RNEMD) methods would have the |
114 |
|
advantage of having this difficult to measure flux known when studying |
227 |
|
illustrated in Figure \ref{demoPic}. |
228 |
|
|
229 |
|
\begin{figure} |
230 |
< |
\includegraphics[width=\linewidth]{demoPic} |
231 |
< |
\caption{A sample showing how a metal slab has its (111) surface |
232 |
< |
covered by capping agent molecules and solvated by hexane.} |
230 |
> |
\includegraphics[width=\linewidth]{method} |
231 |
> |
\caption{Interfacial conductance can be calculated by applying an |
232 |
> |
(unphysical) kinetic energy flux between two slabs, one located |
233 |
> |
within the metal and another on the edge of the periodic box. The |
234 |
> |
system responds by forming a thermal response or a gradient. In |
235 |
> |
bulk liquids, this gradient typically has a single slope, but in |
236 |
> |
interfacial systems, there are distinct thermal conductivity |
237 |
> |
domains. The interfacial conductance, $G$ is found by measuring the |
238 |
> |
temperature gap at the Gibbs dividing surface, or by using second |
239 |
> |
derivatives of the thermal profile.} |
240 |
|
\label{demoPic} |
241 |
|
\end{figure} |
242 |
|
|
339 |
|
organic solvent molecules in our simulations. |
340 |
|
|
341 |
|
\begin{figure} |
342 |
< |
\includegraphics[width=\linewidth]{demoMol} |
343 |
< |
\caption{Denomination of atoms or pseudo-atoms in our simulations: a) |
344 |
< |
UA-hexane; b) AA-hexane; c) UA-toluene; d) AA-toluene.} |
342 |
> |
\includegraphics[width=\linewidth]{structures} |
343 |
> |
\caption{Structures of the capping agent and solvents utilized in |
344 |
> |
these simulations. The chemically-distinct sites (a-e) are expanded |
345 |
> |
in terms of constituent atoms for both United Atom (UA) and All Atom |
346 |
> |
(AA) force fields. Most parameters are from |
347 |
> |
Refs. \protect\cite{TraPPE-UA.alkanes,TraPPE-UA.alkylbenzenes} (UA) and |
348 |
> |
\protect\cite{OPLSAA} (AA). Cross-interactions with the Au atoms are given |
349 |
> |
in Table \ref{MnM}.} |
350 |
|
\label{demoMol} |
351 |
|
\end{figure} |
352 |
|
|
387 |
|
(UA or AA) of capping agent can be different from the |
388 |
|
solvent. Regardless of model choice, the force field parameters for |
389 |
|
interactions between capping agent and solvent can be derived using |
390 |
< |
Lorentz-Berthelot Mixing Rule:[EQN'S] |
390 |
> |
Lorentz-Berthelot Mixing Rule: |
391 |
> |
\begin{eqnarray} |
392 |
> |
\sigma_{IJ} & = & \frac{1}{2} \left(\sigma_{II} + \sigma_{JJ}\right) \\ |
393 |
> |
\epsilon_{IJ} & = & \sqrt{\epsilon_{II}\epsilon_{JJ}} |
394 |
> |
\end{eqnarray} |
395 |
|
|
380 |
– |
|
396 |
|
To describe the interactions between metal Au and non-metal capping |
397 |
|
agent and solvent particles, we refer to an adsorption study of alkyl |
398 |
|
thiols on gold surfaces by Vlugt {\it et |
420 |
|
\begin{table*} |
421 |
|
\begin{minipage}{\linewidth} |
422 |
|
\begin{center} |
423 |
< |
\caption{Lennard-Jones parameters for Au-non-Metal |
424 |
< |
interactions in our simulations.} |
425 |
< |
|
426 |
< |
\begin{tabular}{ccc} |
423 |
> |
\caption{Non-bonded interaction parameters (including cross |
424 |
> |
interactions with Au atoms) for both force fields used in this |
425 |
> |
work.} |
426 |
> |
\begin{tabular}{lllllll} |
427 |
|
\hline\hline |
428 |
< |
Non-metal atom & $\sigma$ & $\epsilon$ \\ |
429 |
< |
(or pseudo-atom) & \AA & kcal/mol \\ |
428 |
> |
& Site & $\sigma_{ii}$ & $\epsilon_{ii}$ & $q_i$ & |
429 |
> |
$\sigma_{Au-i}$ & $\epsilon_{Au-i}$ \\ |
430 |
> |
& & (\AA) & (kcal/mol) & ($e$) & (\AA) & (kcal/mol) \\ |
431 |
|
\hline |
432 |
< |
S & 2.40 & 8.465 \\ |
433 |
< |
CH3 & 3.54 & 0.2146 \\ |
434 |
< |
CH2 & 3.54 & 0.1749 \\ |
435 |
< |
CT3 & 3.365 & 0.1373 \\ |
436 |
< |
CT2 & 3.365 & 0.1373 \\ |
437 |
< |
CTT & 3.365 & 0.1373 \\ |
438 |
< |
HC & 2.865 & 0.09256 \\ |
439 |
< |
CHar & 3.4625 & 0.1680 \\ |
440 |
< |
CRar & 3.555 & 0.1604 \\ |
441 |
< |
CA & 3.173 & 0.0640 \\ |
442 |
< |
HA & 2.746 & 0.0414 \\ |
432 |
> |
United Atom (UA) |
433 |
> |
&CH3 & 3.75 & 0.1947 & - & 3.54 & 0.2146 \\ |
434 |
> |
&CH2 & 3.95 & 0.0914 & - & 3.54 & 0.1749 \\ |
435 |
> |
&CHar & 3.695 & 0.1003 & - & 3.4625 & 0.1680 \\ |
436 |
> |
&CRar & 3.88 & 0.04173 & - & 3.555 & 0.1604 \\ |
437 |
> |
\hline |
438 |
> |
All Atom (AA) |
439 |
> |
&CT3 & 3.50 & 0.066 & -0.18 & 3.365 & 0.1373 \\ |
440 |
> |
&CT2 & 3.50 & 0.066 & -0.12 & 3.365 & 0.1373 \\ |
441 |
> |
&CTT & 3.50 & 0.066 & -0.065 & 3.365 & 0.1373 \\ |
442 |
> |
&HC & 2.50 & 0.030 & 0.06 & 2.865 & 0.09256 \\ |
443 |
> |
&CA & 3.55 & 0.070 & -0.115 & 3.173 & 0.0640 \\ |
444 |
> |
&HA & 2.42 & 0.030 & 0.115 & 2.746 & 0.0414 \\ |
445 |
> |
\hline |
446 |
> |
Both UA and AA & S & 4.45 & 0.25 & - & 2.40 & 8.465 \\ |
447 |
|
\hline\hline |
448 |
|
\end{tabular} |
449 |
|
\label{MnM} |
513 |
|
interfaces with UA model and different hexane molecule numbers |
514 |
|
at different temperatures using a range of energy fluxes.} |
515 |
|
|
516 |
< |
\begin{tabular}{cccccccc} |
516 |
> |
\begin{tabular}{ccccccc} |
517 |
|
\hline\hline |
518 |
< |
$\langle T\rangle$ & & $L_x$ & $L_y$ & $L_z$ & $J_z$ & |
519 |
< |
$G$ & $G^\prime$ \\ |
520 |
< |
(K) & $N_{hexane}$ & \multicolumn{3}{c}{(\AA)} & (GW/m$^2$) & |
518 |
> |
$\langle T\rangle$ & $N_{hexane}$ & Fixed & $\rho_{hexane}$ & |
519 |
> |
$J_z$ & $G$ & $G^\prime$ \\ |
520 |
> |
(K) & & $L_x$ \& $L_y$? & (g/cm$^3$) & (GW/m$^2$) & |
521 |
|
\multicolumn{2}{c}{(MW/m$^2$/K)} \\ |
522 |
|
\hline |
523 |
< |
200 & 266 & 29.86 & 25.80 & 113.1 & -0.96 & |
524 |
< |
102() & 80.0() \\ |
525 |
< |
& 200 & 29.84 & 25.81 & 93.9 & 1.92 & |
526 |
< |
129() & 87.3() \\ |
527 |
< |
& & 29.84 & 25.81 & 95.3 & 1.93 & |
528 |
< |
131() & 77.5() \\ |
529 |
< |
& 166 & 29.84 & 25.81 & 85.7 & 0.97 & |
530 |
< |
115() & 69.3() \\ |
531 |
< |
& & & & & 1.94 & |
532 |
< |
125() & 87.1() \\ |
533 |
< |
250 & 200 & 29.84 & 25.87 & 106.8 & 0.96 & |
534 |
< |
81.8() & 67.0() \\ |
535 |
< |
& 166 & 29.87 & 25.84 & 94.8 & 0.98 & |
536 |
< |
79.0() & 62.9() \\ |
537 |
< |
& & 29.84 & 25.85 & 95.0 & 1.44 & |
538 |
< |
76.2() & 64.8() \\ |
523 |
> |
200 & 266 & No & 0.672 & -0.96 & 102() & 80.0() \\ |
524 |
> |
& 200 & Yes & 0.694 & 1.92 & 129() & 87.3() \\ |
525 |
> |
& & Yes & 0.672 & 1.93 & 131() & 77.5() \\ |
526 |
> |
& & No & 0.688 & 0.96 & 125() & 90.2() \\ |
527 |
> |
& & & & 1.91 & 139() & 101() \\ |
528 |
> |
& & & & 2.83 & 141() & 89.9() \\ |
529 |
> |
& 166 & Yes & 0.679 & 0.97 & 115() & 69.3() \\ |
530 |
> |
& & & & 1.94 & 125() & 87.1() \\ |
531 |
> |
& & No & 0.681 & 0.97 & 141() & 77.7() \\ |
532 |
> |
& & & & 1.92 & 138() & 98.9() \\ |
533 |
> |
\hline |
534 |
> |
250 & 200 & No & 0.560 & 0.96 & 74.8() & 61.8() \\ |
535 |
> |
& & & & -0.95 & 49.4() & 45.7() \\ |
536 |
> |
& 166 & Yes & 0.570 & 0.98 & 79.0() & 62.9() \\ |
537 |
> |
& & No & 0.569 & 0.97 & 80.3() & 67.1() \\ |
538 |
> |
& & & & 1.44 & 76.2() & 64.8() \\ |
539 |
> |
& & & & -0.95 & 56.4() & 54.4() \\ |
540 |
> |
& & & & -1.85 & 47.8() & 53.5() \\ |
541 |
|
\hline\hline |
542 |
|
\end{tabular} |
543 |
|
\label{AuThiolHexaneUA} |
568 |
|
important role in the thermal transport process across the interface |
569 |
|
in that higher degree of contact could yield increased conductance. |
570 |
|
|
571 |
< |
[ADD Lxyz AND ERROR ESTIMATE TO TABLE] |
571 |
> |
[ADD ERROR ESTIMATE TO TABLE] |
572 |
|
\begin{table*} |
573 |
|
\begin{minipage}{\linewidth} |
574 |
|
\begin{center} |
577 |
|
interface at different temperatures using a range of energy |
578 |
|
fluxes.} |
579 |
|
|
580 |
< |
\begin{tabular}{cccc} |
581 |
< |
\hline\hline |
582 |
< |
$\langle T\rangle$ & $J_z$ & $G$ & $G^\prime$ \\ |
583 |
< |
(K) & (GW/m$^2$) & \multicolumn{2}{c}{(MW/m$^2$/K)} \\ |
580 |
> |
\begin{tabular}{ccccc} |
581 |
> |
\hline\hline |
582 |
> |
$\langle T\rangle$ & $\rho_{toluene}$ & $J_z$ & $G$ & $G^\prime$ \\ |
583 |
> |
(K) & (g/cm$^3$) & (GW/m$^2$) & \multicolumn{2}{c}{(MW/m$^2$/K)} \\ |
584 |
|
\hline |
585 |
< |
200 & -1.86 & 180() & 135() \\ |
586 |
< |
& 2.15 & 204() & 113() \\ |
587 |
< |
& -3.93 & 175() & 114() \\ |
588 |
< |
300 & -1.91 & 143() & 125() \\ |
589 |
< |
& -4.19 & 134() & 113() \\ |
585 |
> |
200 & 0.933 & -1.86 & 180() & 135() \\ |
586 |
> |
& & 2.15 & 204() & 113() \\ |
587 |
> |
& & -3.93 & 175() & 114() \\ |
588 |
> |
\hline |
589 |
> |
300 & 0.855 & -1.91 & 143() & 125() \\ |
590 |
> |
& & -4.19 & 134() & 113() \\ |
591 |
|
\hline\hline |
592 |
|
\end{tabular} |
593 |
|
\label{AuThiolToluene} |
620 |
|
However, when the surface is not completely covered by butanethiols, |
621 |
|
the simulated system is more resistent to the reconstruction |
622 |
|
above. Our Au-butanethiol/toluene system did not see this phenomena |
623 |
< |
even at $\langle T\rangle\sim$300K. The Au(111) surfaces have a 90\% coverage of |
624 |
< |
butanethiols and have empty three-fold sites. These empty sites could |
625 |
< |
help prevent surface reconstruction in that they provide other means |
626 |
< |
of capping agent relaxation. It is observed that butanethiols can |
627 |
< |
migrate to their neighbor empty sites during a simulation. Therefore, |
628 |
< |
we were able to obtain $G$'s for these interfaces even at a relatively |
629 |
< |
high temperature without being affected by surface reconstructions. |
623 |
> |
even at $\langle T\rangle\sim$300K. The Au(111) surfaces have a 90\% |
624 |
> |
coverage of butanethiols and have empty three-fold sites. These empty |
625 |
> |
sites could help prevent surface reconstruction in that they provide |
626 |
> |
other means of capping agent relaxation. It is observed that |
627 |
> |
butanethiols can migrate to their neighbor empty sites during a |
628 |
> |
simulation. Therefore, we were able to obtain $G$'s for these |
629 |
> |
interfaces even at a relatively high temperature without being |
630 |
> |
affected by surface reconstructions. |
631 |
|
|
632 |
|
\subsection{Influence of Capping Agent Coverage on $G$} |
633 |
|
To investigate the influence of butanethiol coverage on interfacial |
703 |
|
its effect to the process of interfacial thermal transport. Thus, one |
704 |
|
can see a plateau of $G$ vs. butanethiol coverage in our results. |
705 |
|
|
706 |
< |
[NEED ERROR ESTIMATE, MAY ALSO PUT J HERE] |
707 |
< |
\begin{table*} |
708 |
< |
\begin{minipage}{\linewidth} |
709 |
< |
\begin{center} |
710 |
< |
\caption{Computed interfacial thermal conductivity ($G$) values |
711 |
< |
for the Au-butanethiol/solvent interface with various UA |
712 |
< |
models and different capping agent coverages at $\langle |
713 |
< |
T\rangle\sim$200K using certain energy flux respectively.} |
714 |
< |
|
691 |
< |
\begin{tabular}{cccc} |
692 |
< |
\hline\hline |
693 |
< |
Thiol & \multicolumn{3}{c}{$G$(MW/m$^2$/K)} \\ |
694 |
< |
coverage (\%) & hexane & hexane(D) & toluene \\ |
695 |
< |
\hline |
696 |
< |
0.0 & 46.5() & 43.9() & 70.1() \\ |
697 |
< |
25.0 & 151() & 153() & 249() \\ |
698 |
< |
50.0 & 172() & 182() & 214() \\ |
699 |
< |
75.0 & 242() & 229() & 244() \\ |
700 |
< |
88.9 & 178() & - & - \\ |
701 |
< |
100.0 & 137() & 153() & 187() \\ |
702 |
< |
\hline\hline |
703 |
< |
\end{tabular} |
704 |
< |
\label{tlnUhxnUhxnD} |
705 |
< |
\end{center} |
706 |
< |
\end{minipage} |
707 |
< |
\end{table*} |
706 |
> |
[NEED ERROR ESTIMATE] |
707 |
> |
\begin{figure} |
708 |
> |
\includegraphics[width=\linewidth]{coverage} |
709 |
> |
\caption{Comparison of interfacial thermal conductivity ($G$) values |
710 |
> |
for the Au-butanethiol/solvent interface with various UA models and |
711 |
> |
different capping agent coverages at $\langle T\rangle\sim$200K |
712 |
> |
using certain energy flux respectively.} |
713 |
> |
\label{coverage} |
714 |
> |
\end{figure} |
715 |
|
|
716 |
|
\subsection{Influence of Chosen Molecule Model on $G$} |
717 |
|
[MAY COMBINE W MECHANISM STUDY] |
732 |
|
\caption{Computed interfacial thermal conductivity ($G$ and |
733 |
|
$G^\prime$) values for interfaces using various models for |
734 |
|
solvent and capping agent (or without capping agent) at |
735 |
< |
$\langle T\rangle\sim$200K.} |
735 |
> |
$\langle T\rangle\sim$200K. (D stands for deuterated solvent |
736 |
> |
or capping agent molecules; ``Avg.'' denotes results that are |
737 |
> |
averages of several simulations.)} |
738 |
|
|
739 |
|
\begin{tabular}{ccccc} |
740 |
|
\hline\hline |
742 |
|
(or bare surface) & model & (GW/m$^2$) & |
743 |
|
\multicolumn{2}{c}{(MW/m$^2$/K)} \\ |
744 |
|
\hline |
745 |
< |
UA & AA hexane & 1.94 & 135() & 129() \\ |
746 |
< |
& & 2.86 & 126() & 115() \\ |
747 |
< |
& AA toluene & 1.89 & 200() & 149() \\ |
748 |
< |
AA & UA hexane & 1.94 & 116() & 129() \\ |
749 |
< |
& AA hexane & 3.76 & 451() & 378() \\ |
750 |
< |
& & 4.71 & 432() & 334() \\ |
751 |
< |
& AA toluene & 3.79 & 487() & 290() \\ |
752 |
< |
AA(D) & UA hexane & 1.94 & 158() & 172() \\ |
753 |
< |
bare & AA hexane & 0.96 & 31.0() & 29.4() \\ |
745 |
> |
UA & UA hexane & Avg. & 131() & 86.5() \\ |
746 |
> |
& UA hexane(D) & 1.95 & 153() & 136() \\ |
747 |
> |
& AA hexane & 1.94 & 135() & 129() \\ |
748 |
> |
& & 2.86 & 126() & 115() \\ |
749 |
> |
& UA toluene & 1.96 & 187() & 151() \\ |
750 |
> |
& AA toluene & 1.89 & 200() & 149() \\ |
751 |
> |
\hline |
752 |
> |
AA & UA hexane & 1.94 & 116() & 129() \\ |
753 |
> |
& AA hexane & Avg. & 442() & 356() \\ |
754 |
> |
& AA hexane(D) & 1.93 & 222() & 234() \\ |
755 |
> |
& UA toluene & 1.98 & 125() & 96.5() \\ |
756 |
> |
& AA toluene & 3.79 & 487() & 290() \\ |
757 |
> |
\hline |
758 |
> |
AA(D) & UA hexane & 1.94 & 158() & 172() \\ |
759 |
> |
& AA hexane & 1.92 & 243() & 191() \\ |
760 |
> |
& AA toluene & 1.93 & 364() & 322() \\ |
761 |
> |
\hline |
762 |
> |
bare & UA hexane & Avg. & 46.5() & 49.4() \\ |
763 |
> |
& UA hexane(D) & 0.98 & 43.9() & 43.0() \\ |
764 |
> |
& AA hexane & 0.96 & 31.0() & 29.4() \\ |
765 |
> |
& UA toluene & 1.99 & 70.1() & 65.8() \\ |
766 |
|
\hline\hline |
767 |
|
\end{tabular} |
768 |
|
\label{modelTest} |
799 |
|
|
800 |
|
However, for Au-butanethiol/toluene interfaces, having the AA |
801 |
|
butanethiol deuterated did not yield a significant change in the |
802 |
< |
measurement results. |
803 |
< |
. , so extra degrees of freedom |
804 |
< |
such as the C-H vibrations could enhance heat exchange between these |
805 |
< |
two phases and result in a much higher conductivity. |
802 |
> |
measurement results. Compared to the C-H vibrational overlap between |
803 |
> |
hexane and butanethiol, both of which have alkyl chains, that overlap |
804 |
> |
between toluene and butanethiol is not so significant and thus does |
805 |
> |
not have as much contribution to the ``Intramolecular Vibration |
806 |
> |
Redistribution''[CITE HASE]. Conversely, extra degrees of freedom such |
807 |
> |
as the C-H vibrations could yield higher heat exchange rate between |
808 |
> |
these two phases and result in a much higher conductivity. |
809 |
|
|
786 |
– |
|
810 |
|
Although the QSC model for Au is known to predict an overly low value |
811 |
< |
for bulk metal gold conductivity[CITE NIVSRNEMD], our computational |
811 |
> |
for bulk metal gold conductivity\cite{kuang:164101}, our computational |
812 |
|
results for $G$ and $G^\prime$ do not seem to be affected by this |
813 |
< |
drawback of the model for metal. Instead, the modeling of interfacial |
814 |
< |
thermal transport behavior relies mainly on an accurate description of |
815 |
< |
the interactions between components occupying the interfaces. |
813 |
> |
drawback of the model for metal. Instead, our results suggest that the |
814 |
> |
modeling of interfacial thermal transport behavior relies mainly on |
815 |
> |
the accuracy of the interaction descriptions between components |
816 |
> |
occupying the interfaces. |
817 |
|
|
818 |
|
\subsection{Mechanism of Interfacial Thermal Conductance Enhancement |
819 |
|
by Capping Agent} |
829 |
|
the velocity auto-correlation functions, which is used to construct a |
830 |
|
power spectrum via a Fourier transform. |
831 |
|
|
832 |
+ |
[MAY RELATE TO HASE'S] |
833 |
|
The gold surfaces covered by |
834 |
|
butanethiol molecules, compared to bare gold surfaces, exhibit an |
835 |
|
additional peak observed at a frequency of $\sim$170cm$^{-1}$, which |
842 |
|
combination of these two effects produces the drastic interfacial |
843 |
|
thermal conductance enhancement in the all-atom model. |
844 |
|
|
845 |
< |
[MAY NEED TO CONVERT TO JPEG] |
845 |
> |
[REDO. MAY NEED TO CONVERT TO JPEG] |
846 |
|
\begin{figure} |
847 |
|
\includegraphics[width=\linewidth]{vibration} |
848 |
|
\caption{Vibrational spectra obtained for gold in different |