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Revision 3752 by skuang, Tue Jul 26 23:01:51 2011 UTC

# Line 190 | Line 190 | ways to define $G$. One way is to assume the temperatu
190   temperature of the two separated phases.
191  
192   When the interfacial conductance is {\it not} small, there are two
193 < ways to define $G$. One way is to assume the temperature is discrete
194 < on the two sides of the interface. $G$ can be calculated using the
195 < applied thermal flux $J$ and the maximum temperature difference
196 < measured along the thermal gradient max($\Delta T$), which occurs at
197 < the Gibbs deviding surface (Figure \ref{demoPic}): \begin{equation}
198 <  G=\frac{J}{\Delta T} \label{discreteG} \end{equation}
193 > ways to define $G$. One common way is to assume the temperature is
194 > discrete on the two sides of the interface. $G$ can be calculated
195 > using the applied thermal flux $J$ and the maximum temperature
196 > difference measured along the thermal gradient max($\Delta T$), which
197 > occurs at the Gibbs deviding surface (Figure \ref{demoPic}):
198 > \begin{equation}
199 >  G=\frac{J}{\Delta T}
200 > \label{discreteG}
201 > \end{equation}
202  
203   \begin{figure}
204   \includegraphics[width=\linewidth]{method}
# Line 296 | Line 299 | between periodic images of the gold interfaces is $35
299   solvent molecules would change the normal behavior of the liquid
300   phase. Therefore, our $N_{solvent}$ values were chosen to ensure that
301   these extreme cases did not happen to our simulations. The spacing
302 < between periodic images of the gold interfaces is $35 \sim 75$\AA.
302 > between periodic images of the gold interfaces is $45 \sim 75$\AA.
303  
304   The initial configurations generated are further equilibrated with the
305   $x$ and $y$ dimensions fixed, only allowing the $z$-length scale to
# Line 347 | Line 350 | particles of different species.
350    these simulations. The chemically-distinct sites (a-e) are expanded
351    in terms of constituent atoms for both United Atom (UA) and All Atom
352    (AA) force fields.  Most parameters are from
353 <  Refs. \protect\cite{TraPPE-UA.alkanes,TraPPE-UA.alkylbenzenes} (UA) and
351 <  \protect\cite{OPLSAA} (AA).  Cross-interactions with the Au atoms are given
352 <  in Table \ref{MnM}.}
353 >  Refs. \protect\cite{TraPPE-UA.alkanes,TraPPE-UA.alkylbenzenes,TraPPE-UA.thiols} (UA) and \protect\cite{OPLSAA} (AA). Cross-interactions with the Au atoms are given in Table \ref{MnM}.}
354   \label{demoMol}
355   \end{figure}
356  
# Line 386 | Line 387 | included in our studies as well. For hexane, the OPLS-
387   this solvent model.
388  
389   Besides the TraPPE-UA models, AA models for both organic solvents are
390 < included in our studies as well. For hexane, the OPLS-AA\cite{OPLSAA}
391 < force field is used, and additional explicit hydrogen sites were
390 > included in our studies as well. The OPLS-AA\cite{OPLSAA} force fields
391 > were used. For hexane, additional explicit hydrogen sites were
392   included. Besides bonding and non-bonded site-site interactions,
393   partial charges and the electrostatic interactions were added to each
394 < CT and HC site. For toluene, the United Force Field developed by
395 < Rapp\'{e} {\it et al.}\cite{doi:10.1021/ja00051a040} was adopted, and
396 < a flexible model for the toluene molecule was utilized which included
396 < bond, bend, torsion, and inversion potentials to enforce ring
397 < planarity.
394 > CT and HC site. For toluene, a flexible model for the toluene molecule
395 > was utilized which included bond, bend, torsion, and inversion
396 > potentials to enforce ring planarity.
397  
398   The butanethiol capping agent in our simulations, were also modeled
399   with both UA and AA model. The TraPPE-UA force field includes
# Line 730 | Line 729 | case, $G$ decrease could not be offset but instead acc
729   would not offset this effect. Eventually, when butanethiol coverage
730   continues to decrease, solvent-capping agent contact actually
731   decreases with the disappearing of butanethiol molecules. In this
732 < case, $G$ decrease could not be offset but instead accelerated. [NEED
732 > case, $G$ decrease could not be offset but instead accelerated. [MAY NEED
733   SNAPSHOT SHOWING THE PHENOMENA / SLAB DENSITY ANALYSIS]
734  
735   A comparison of the results obtained from differenet organic solvents
# Line 956 | Line 955 | Au(111) surface\cite{vlugt:cpc2007154}. This differenc
955  
956   Vlugt {\it et al.} has investigated the surface thiol structures for
957   nanocrystal gold and pointed out that they differs from those of the
958 < Au(111) surface\cite{vlugt:cpc2007154}. This difference might lead to
959 < change of interfacial thermal transport behavior as well. To
960 < investigate this problem, an effective means to introduce thermal flux
961 < and measure the corresponding thermal gradient is desirable for
962 < simulating structures with spherical symmetry.
958 > Au(111) surface\cite{landman:1998,vlugt:cpc2007154}. This difference
959 > might lead to change of interfacial thermal transport behavior as
960 > well. To investigate this problem, an effective means to introduce
961 > thermal flux and measure the corresponding thermal gradient is
962 > desirable for simulating structures with spherical symmetry.
963  
964   \section{Acknowledgments}
965   Support for this project was provided by the National Science

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