ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/group/interfacial/interfacial.tex
(Generate patch)

Comparing interfacial/interfacial.tex (file contents):
Revision 3751 by gezelter, Tue Jul 26 19:43:10 2011 UTC vs.
Revision 3755 by skuang, Fri Jul 29 15:45:14 2011 UTC

# Line 83 | Line 83 | thermal conductance. Wang {\it et al.} studied heat tr
83   traditional methods developed for homogeneous systems.
84  
85   Experimentally, various interfaces have been investigated for their
86 < thermal conductance. Wang {\it et al.} studied heat transport through
86 > thermal conductance. Cahill and coworkers studied nanoscale thermal
87 > transport from metal nanoparticle/fluid interfaces, to epitaxial
88 > TiN/single crystal oxides interfaces, to hydrophilic and hydrophobic
89 > interfaces between water and solids with different self-assembled
90 > monolayers.\cite{Wilson:2002uq,PhysRevB.67.054302,doi:10.1021/jp048375k,PhysRevLett.96.186101}
91 > Wang {\it et al.} studied heat transport through
92   long-chain hydrocarbon monolayers on gold substrate at individual
93   molecular level,\cite{Wang10082007} Schmidt {\it et al.} studied the
94   role of CTAB on thermal transport between gold nanorods and
# Line 106 | Line 111 | difficult to measure with Equilibrium MD or forward NE
111   measurements for heat conductance of interfaces between the capping
112   monolayer on Au and a solvent phase have yet to be studied with their
113   approach. The comparatively low thermal flux through interfaces is
114 < difficult to measure with Equilibrium MD or forward NEMD simulation
114 > difficult to measure with Equilibrium
115 > MD\cite{doi:10.1080/0026897031000068578} or forward NEMD simulation
116   methods. Therefore, the Reverse NEMD (RNEMD)
117   methods\cite{MullerPlathe:1997xw,kuang:164101} would have the
118   advantage of applying this difficult to measure flux (while measuring
# Line 190 | Line 196 | ways to define $G$. One way is to assume the temperatu
196   temperature of the two separated phases.
197  
198   When the interfacial conductance is {\it not} small, there are two
199 < ways to define $G$. One way is to assume the temperature is discrete
200 < on the two sides of the interface. $G$ can be calculated using the
201 < applied thermal flux $J$ and the maximum temperature difference
202 < measured along the thermal gradient max($\Delta T$), which occurs at
203 < the Gibbs deviding surface (Figure \ref{demoPic}): \begin{equation}
204 <  G=\frac{J}{\Delta T} \label{discreteG} \end{equation}
199 > ways to define $G$. One common way is to assume the temperature is
200 > discrete on the two sides of the interface. $G$ can be calculated
201 > using the applied thermal flux $J$ and the maximum temperature
202 > difference measured along the thermal gradient max($\Delta T$), which
203 > occurs at the Gibbs deviding surface (Figure \ref{demoPic}). This is
204 > known as the Kapitza conductance, which is the inverse of the Kapitza
205 > resistance.
206 > \begin{equation}
207 >  G=\frac{J}{\Delta T}
208 > \label{discreteG}
209 > \end{equation}
210  
211   \begin{figure}
212   \includegraphics[width=\linewidth]{method}
# Line 296 | Line 307 | between periodic images of the gold interfaces is $35
307   solvent molecules would change the normal behavior of the liquid
308   phase. Therefore, our $N_{solvent}$ values were chosen to ensure that
309   these extreme cases did not happen to our simulations. The spacing
310 < between periodic images of the gold interfaces is $35 \sim 75$\AA.
310 > between periodic images of the gold interfaces is $45 \sim 75$\AA.
311  
312   The initial configurations generated are further equilibrated with the
313   $x$ and $y$ dimensions fixed, only allowing the $z$-length scale to
# Line 347 | Line 358 | particles of different species.
358    these simulations. The chemically-distinct sites (a-e) are expanded
359    in terms of constituent atoms for both United Atom (UA) and All Atom
360    (AA) force fields.  Most parameters are from
361 <  Refs. \protect\cite{TraPPE-UA.alkanes,TraPPE-UA.alkylbenzenes} (UA) and
362 <  \protect\cite{OPLSAA} (AA).  Cross-interactions with the Au atoms are given
363 <  in Table \ref{MnM}.}
361 >  Refs. \protect\cite{TraPPE-UA.alkanes,TraPPE-UA.alkylbenzenes,TraPPE-UA.thiols}
362 >  (UA) and \protect\cite{OPLSAA} (AA). Cross-interactions with the Au
363 >  atoms are given in Table \ref{MnM}.}
364   \label{demoMol}
365   \end{figure}
366  
# Line 386 | Line 397 | included in our studies as well. For hexane, the OPLS-
397   this solvent model.
398  
399   Besides the TraPPE-UA models, AA models for both organic solvents are
400 < included in our studies as well. For hexane, the OPLS-AA\cite{OPLSAA}
401 < force field is used, and additional explicit hydrogen sites were
400 > included in our studies as well. The OPLS-AA\cite{OPLSAA} force fields
401 > were used. For hexane, additional explicit hydrogen sites were
402   included. Besides bonding and non-bonded site-site interactions,
403   partial charges and the electrostatic interactions were added to each
404 < CT and HC site. For toluene, the United Force Field developed by
405 < Rapp\'{e} {\it et al.}\cite{doi:10.1021/ja00051a040} was adopted, and
406 < a flexible model for the toluene molecule was utilized which included
396 < bond, bend, torsion, and inversion potentials to enforce ring
397 < planarity.
404 > CT and HC site. For toluene, a flexible model for the toluene molecule
405 > was utilized which included bond, bend, torsion, and inversion
406 > potentials to enforce ring planarity.
407  
408   The butanethiol capping agent in our simulations, were also modeled
409   with both UA and AA model. The TraPPE-UA force field includes
# Line 471 | Line 480 | our simulations.
480    \end{minipage}
481   \end{table*}
482  
474 \subsection{Vibrational Power Spectrum}
483  
484 < To investigate the mechanism of interfacial thermal conductance, the
485 < vibrational power spectrum was computed. Power spectra were taken for
486 < individual components in different simulations. To obtain these
487 < spectra, simulations were run after equilibration, in the NVE
488 < ensemble, and without a thermal gradient. Snapshots of configurations
489 < were collected at a frequency that is higher than that of the fastest
490 < vibrations occuring in the simulations. With these configurations, the
491 < velocity auto-correlation functions can be computed:
484 < \begin{equation}
485 < C_A (t) = \langle\vec{v}_A (t)\cdot\vec{v}_A (0)\rangle
486 < \label{vCorr}
487 < \end{equation}
488 < The power spectrum is constructed via a Fourier transform of the
489 < symmetrized velocity autocorrelation function,
490 < \begin{equation}
491 <  \hat{f}(\omega) =
492 <  \int_{-\infty}^{\infty} C_A (t) e^{-2\pi it\omega}\,dt
493 < \label{fourier}
494 < \end{equation}
484 > \section{Results}
485 > There are many factors contributing to the measured interfacial
486 > conductance; some of these factors are physically motivated
487 > (e.g. coverage of the surface by the capping agent coverage and
488 > solvent identity), while some are governed by parameters of the
489 > methodology (e.g. applied flux and the formulas used to obtain the
490 > conductance). In this section we discuss the major physical and
491 > calculational effects on the computed conductivity.
492  
493 < \section{Results and Discussions}
497 < In what follows, how the parameters and protocol of simulations would
498 < affect the measurement of $G$'s is first discussed. With a reliable
499 < protocol and set of parameters, the influence of capping agent
500 < coverage on thermal conductance is investigated. Besides, different
501 < force field models for both solvents and selected deuterated models
502 < were tested and compared. Finally, a summary of the role of capping
503 < agent in the interfacial thermal transport process is given.
493 > \subsection{Effects due to capping agent coverage}
494  
495 < \subsection{How Simulation Parameters Affects $G$}
496 < We have varied our protocol or other parameters of the simulations in
497 < order to investigate how these factors would affect the measurement of
498 < $G$'s. It turned out that while some of these parameters would not
499 < affect the results substantially, some other changes to the
500 < simulations would have a significant impact on the measurement
511 < results.
495 > A series of different initial conditions with a range of surface
496 > coverages was prepared and solvated with various with both of the
497 > solvent molecules. These systems were then equilibrated and their
498 > interfacial thermal conductivity was measured with the NIVS
499 > algorithm. Figure \ref{coverage} demonstrates the trend of conductance
500 > with respect to surface coverage.
501  
502 < In some of our simulations, we allowed $L_x$ and $L_y$ to change
503 < during equilibrating the liquid phase. Due to the stiffness of the
504 < crystalline Au structure, $L_x$ and $L_y$ would not change noticeably
505 < after equilibration. Although $L_z$ could fluctuate $\sim$1\% after a
506 < system is fully equilibrated in the NPT ensemble, this fluctuation, as
507 < well as those of $L_x$ and $L_y$ (which is significantly smaller),
508 < would not be magnified on the calculated $G$'s, as shown in Table
509 < \ref{AuThiolHexaneUA}. This insensivity to $L_i$ fluctuations allows
510 < reliable measurement of $G$'s without the necessity of extremely
511 < cautious equilibration process.
502 > \begin{figure}
503 > \includegraphics[width=\linewidth]{coverage}
504 > \caption{Comparison of interfacial thermal conductivity ($G$) values
505 >  for the Au-butanethiol/solvent interface with various UA models and
506 >  different capping agent coverages at $\langle T\rangle\sim$200K.}
507 > \label{coverage}
508 > \end{figure}
509 >
510 > In partially covered surfaces, the derivative definition for $G^\prime$ (Eq. \ref{derivativeG}) becomes difficult to apply, as the location of maximum change of $\lambda$ becomes washed out.  The discrete definition (Eq. \ref{discreteG}) is easier to apply, as the Gibbs dividing surface is still well-defined. Therefore, $G$ (not $G^\prime$) was used in this section.
511 >
512 > From Figure \ref{coverage}, one can see the significance of the presence of capping agents. When even a small fraction of the Au(111) surface sites are covered with butanethiols, the conductivity exhibits an enhancement by at least a factor of 3.  Cappping agents are clearly playing a major role in thermal transport at metal / organic solvent surfaces.
513  
514 + We note a non-monotonic behavior in the interfacial conductance as a function of surface coverage. The maximum conductance (largest $G$) happens when the surfaces are about 75\% covered with butanethiol caps.  The reason for this behavior is not entirely clear.  One explanation is that incomplete butanethiol coverage allows small gaps between butanethiols to form. These gaps can be filled by transient solvent molecules.  These solvent molecules couple very strongly with the hot capping agent molecules near the surface, and can then carry away (diffusively) the excess thermal energy from the surface.
515 +
516 + There appears to be a competition between the conduction of the thermal energy away from the surface by the capping agents (enhanced by greater coverage) and the coupling of the capping agents with the solvent (enhanced by interdigitation at lower coverages).  This competition would lead to the non-monotonic coverage behavior observed here.
517 +
518 + Results for rigid body toluene solvent, as well as the UA hexane, are within the ranges expected from prior experimental work.\cite{Wilson:2002uq,cahill:793,PhysRevB.80.195406} This suggests that explicit hydrogen atoms might not be  required for modeling thermal transport in these systems.  C-H vibrational modes do not see significant excited state population at low temperatures, and are not likely to carry lower frequency excitations from the solid layer into the bulk liquid.
519 +
520 + The toluene solvent does not exhibit the same behavior as hexane in that $G$ remains at approximately the same magnitude when the capping coverage increases from 25\% to 75\%.  Toluene, as a rigid planar molecule, cannot occupy the relatively small gaps between the capping agents as easily as the chain-like {\it n}-hexane.   The effect of solvent coupling to the capping agent is therefore weaker in toluene except at the very lowest coverage levels.  This effect counters the coverage-dependent conduction of heat away from the metal surface, leading to a much flatter $G$ vs. coverage trend than is observed in {\it n}-hexane.
521 +
522 + \subsection{Effects due to Solvent \& Solvent Models}
523 + In addition to UA solvent and capping agent models, AA models have also been included in our simulations.  In most of this work, the same (UA or AA) model for solvent and capping agent was used, but it is also possible to utilize different models for different components.  We have also included isotopic substitutions (Hydrogen to Deuterium) to decrease the explicit vibrational overlap between solvent and capping agent. Table \ref{modelTest} summarizes the results of these studies.
524 +
525 + \begin{table*}
526 +  \begin{minipage}{\linewidth}
527 +    \begin{center}
528 +      
529 +      \caption{Computed interfacial thermal conductance ($G$ and
530 +        $G^\prime$) values for interfaces using various models for
531 +        solvent and capping agent (or without capping agent) at
532 +        $\langle T\rangle\sim$200K. (D stands for deuterated solvent
533 +        or capping agent molecules; ``Avg.'' denotes results that are
534 +        averages of simulations under different applied thermal flux values $(J_z)$. Error
535 +        estimates are indicated in parentheses.)}
536 +      
537 +      \begin{tabular}{llccc}
538 +        \hline\hline
539 +        Butanethiol model & Solvent & $J_z$ & $G$ & $G^\prime$ \\
540 +        (or bare surface) & model & (GW/m$^2$) &
541 +        \multicolumn{2}{c}{(MW/m$^2$/K)} \\
542 +        \hline
543 +        UA    & UA hexane    & Avg. & 131(9)    & 87(10)    \\
544 +              & UA hexane(D) & 1.95 & 153(5)    & 136(13)   \\
545 +              & AA hexane    & Avg. & 131(6)    & 122(10)   \\
546 +              & UA toluene   & 1.96 & 187(16)   & 151(11)   \\
547 +              & AA toluene   & 1.89 & 200(36)   & 149(53)   \\
548 +        \hline
549 +        AA    & UA hexane    & 1.94 & 116(9)    & 129(8)    \\
550 +              & AA hexane    & Avg. & 442(14)   & 356(31)   \\
551 +              & AA hexane(D) & 1.93 & 222(12)   & 234(54)   \\
552 +              & UA toluene   & 1.98 & 125(25)   & 97(60)    \\
553 +              & AA toluene   & 3.79 & 487(56)   & 290(42)   \\
554 +        \hline
555 +        AA(D) & UA hexane    & 1.94 & 158(25)   & 172(4)    \\
556 +              & AA hexane    & 1.92 & 243(29)   & 191(11)   \\
557 +              & AA toluene   & 1.93 & 364(36)   & 322(67)   \\
558 +        \hline
559 +        bare  & UA hexane    & Avg. & 46.5(3.2) & 49.4(4.5) \\
560 +              & UA hexane(D) & 0.98 & 43.9(4.6) & 43.0(2.0) \\
561 +              & AA hexane    & 0.96 & 31.0(1.4) & 29.4(1.3) \\
562 +              & UA toluene   & 1.99 & 70.1(1.3) & 65.8(0.5) \\
563 +        \hline\hline
564 +      \end{tabular}
565 +      \label{modelTest}
566 +    \end{center}
567 +  \end{minipage}
568 + \end{table*}
569 +
570 + To facilitate direct comparison between force fields, systems with the same capping agent and solvent were prepared with the same length scales for the simulation cells.  
571 +
572 + On bare metal / solvent surfaces, different force field models for hexane yield similar results for both $G$ and $G^\prime$, and these two definitions agree with each other very well. This is primarily an indicator of weak interactions between the metal and the solvent, and is a typical case for acoustic impedance mismatch between these two phases.
573 +
574 + For the fully-covered surfaces, the choice of force field for the capping agent and solvent has a large impact on the calulated values of $G$ and $G^\prime$.  The AA thiol to AA solvent conductivities are much larger than their UA to UA counterparts, and these values exceed the experimental estimates by a large measure.  The AA force field allows significant energy to go into C-H (or C-D) stretching modes, and since these modes are high frequency, this non-quantum behavior is likely responsible for the overestimate of the conductivity.
575 +
576 + The similarity in the vibrational modes available to solvent and capping agent can be reduced by deuterating one of the two components.  Once either the hexanes or the butanethiols are deuterated, one can see a significantly lower $G$ and $G^\prime$ (Figure \ref{aahxntln}).  Compared to the AA model, the UA model yields more reasonable conductivity values with much higher computational efficiency.
577 +
578 + \begin{figure}
579 + \includegraphics[width=\linewidth]{aahxntln}
580 + \caption{Spectra obtained for all-atom (AA) Au / butanethiol / solvent
581 +  systems. When butanethiol is deuterated (lower left), its
582 +  vibrational overlap with hexane decreases significantly.  Since aromatic molecules and the butanethiol are vibrationally dissimilar, the change is not as dramatic when toluene is the solvent (right).}
583 + \label{aahxntln}
584 + \end{figure}
585 +
586 + For the Au / butanethiol / toluene interfaces, having the AA butanethiol deuterated did not yield a significant change in the measured conductance. Compared to the C-H vibrational overlap between hexane and butanethiol, both of which have alkyl chains, the overlap between toluene and butanethiol is not as significant and thus does not contribute as much to the heat exchange process.  The presence of extra degrees of freedom in the AA force field for toluene yields higher heat exchange rates between the two phases and results in a much higher conductivity than in the UA force field.
587 +
588 + \subsubsection{Are electronic excitations in the metal important?}
589 + Because they lack electronic excitations, the QSC and related embedded atom method (EAM) models for gold are known to predict unreasonably low values for bulk conductivity ($\lambda$).\cite{kuang:164101,ISI:000207079300006,Clancy:1992} If the conductance between the phases ($G$) is governed primarily by phonon excitation (and not electronic degrees of freedom), one would expect a classical model to capture most of the interfacial thermal conductance.  Our results for $G$ and $G^\prime$ indicate that this is indeed the case, and suggest that the modeling of interfacial thermal transport depends primarily on the description of the interactions between the various components at the interface.  When the metal is chemically capped, the primary barrier to thermal conductivity appears to be the interface between the capping agent and the surrounding solvent, so the excitations in the metal have little impact on the value of $G$.
590 +
591 + \subsection{Effects due to methodology and simulation parameters}
592 +
593 + START HERE
594 +
595 + We have varied our protocol or other parameters of the simulations in order to investigate how these factors would affect the computation of $G$.
596 +
597 + We allowed $L_x$ and $L_y$ to change during equilibrating the liquid phase. Due to the stiffness of the crystalline Au structure, $L_x$ and $L_y$ would not change noticeably after equilibration. Although $L_z$ could fluctuate $\sim$1\% after a system is fully equilibrated in the NPT ensemble, this fluctuation, as well as those of $L_x$ and $L_y$ (which is significantly smaller), would not be magnified on the calculated $G$'s, as shown in Table \ref{AuThiolHexaneUA}. This insensivity to $L_i$ fluctuations allows reliable measurement of $G$'s without the necessity of extremely cautious equilibration process.
598 +
599   As stated in our computational details, the spacing filled with
600   solvent molecules can be chosen within a range. This allows some
601   change of solvent molecule numbers for the same Au-butanethiol
# Line 531 | Line 606 | Our NIVS algorithm allows change of unphysical thermal
606   smaller system size would be preferable, given that the liquid phase
607   structure is not affected.
608  
609 + \subsubsection{Effects of applied flux}
610   Our NIVS algorithm allows change of unphysical thermal flux both in
611   direction and in quantity. This feature extends our investigation of
612   interfacial thermal conductance. However, the magnitude of this
# Line 594 | Line 670 | Furthermore, we also attempted to increase system aver
670    \end{minipage}
671   \end{table*}
672  
673 + \subsubsection{Effects due to average temperature}
674 +
675   Furthermore, we also attempted to increase system average temperatures
676   to above 200K. These simulations are first equilibrated in the NPT
677   ensemble under normal pressure. As stated above, the TraPPE-UA model
# Line 678 | Line 756 | affected by surface reconstructions.
756   interfaces even at a relatively high temperature without being
757   affected by surface reconstructions.
758  
681 \subsection{Influence of Capping Agent Coverage on $G$}
682 To investigate the influence of butanethiol coverage on interfacial
683 thermal conductance, a series of different coverage Au-butanethiol
684 surfaces is prepared and solvated with various organic
685 molecules. These systems are then equilibrated and their interfacial
686 thermal conductivity are measured with our NIVS algorithm. Figure
687 \ref{coverage} demonstrates the trend of conductance change with
688 respect to different coverages of butanethiol. To study the isotope
689 effect in interfacial thermal conductance, deuterated UA-hexane is
690 included as well.
759  
760 < \begin{figure}
693 < \includegraphics[width=\linewidth]{coverage}
694 < \caption{Comparison of interfacial thermal conductivity ($G$) values
695 <  for the Au-butanethiol/solvent interface with various UA models and
696 <  different capping agent coverages at $\langle T\rangle\sim$200K
697 <  using certain energy flux respectively.}
698 < \label{coverage}
699 < \end{figure}
760 > \section{Discussion}
761  
762 < It turned out that with partial covered butanethiol on the Au(111)
763 < surface, the derivative definition for $G^\prime$
764 < (Eq. \ref{derivativeG}) was difficult to apply, due to the difficulty
765 < in locating the maximum of change of $\lambda$. Instead, the discrete
766 < definition (Eq. \ref{discreteG}) is easier to apply, as the Gibbs
767 < deviding surface can still be well-defined. Therefore, $G$ (not
768 < $G^\prime$) was used for this section.
762 > \subsection{Capping agent acts as a vibrational coupler between solid
763 >  and solvent phases}
764 > To investigate the mechanism of interfacial thermal conductance, the
765 > vibrational power spectrum was computed. Power spectra were taken for
766 > individual components in different simulations. To obtain these
767 > spectra, simulations were run after equilibration, in the NVE
768 > ensemble, and without a thermal gradient. Snapshots of configurations
769 > were collected at a frequency that is higher than that of the fastest
770 > vibrations occuring in the simulations. With these configurations, the
771 > velocity auto-correlation functions can be computed:
772 > \begin{equation}
773 > C_A (t) = \langle\vec{v}_A (t)\cdot\vec{v}_A (0)\rangle
774 > \label{vCorr}
775 > \end{equation}
776 > The power spectrum is constructed via a Fourier transform of the
777 > symmetrized velocity autocorrelation function,
778 > \begin{equation}
779 >  \hat{f}(\omega) =
780 >  \int_{-\infty}^{\infty} C_A (t) e^{-2\pi it\omega}\,dt
781 > \label{fourier}
782 > \end{equation}
783  
709 From Figure \ref{coverage}, one can see the significance of the
710 presence of capping agents. Even when a fraction of the Au(111)
711 surface sites are covered with butanethiols, the conductivity would
712 see an enhancement by at least a factor of 3. This indicates the
713 important role cappping agent is playing for thermal transport
714 phenomena on metal / organic solvent surfaces.
784  
785 < Interestingly, as one could observe from our results, the maximum
717 < conductance enhancement (largest $G$) happens while the surfaces are
718 < about 75\% covered with butanethiols. This again indicates that
719 < solvent-capping agent contact has an important role of the thermal
720 < transport process. Slightly lower butanethiol coverage allows small
721 < gaps between butanethiols to form. And these gaps could be filled with
722 < solvent molecules, which acts like ``heat conductors'' on the
723 < surface. The higher degree of interaction between these solvent
724 < molecules and capping agents increases the enhancement effect and thus
725 < produces a higher $G$ than densely packed butanethiol arrays. However,
726 < once this maximum conductance enhancement is reached, $G$ decreases
727 < when butanethiol coverage continues to decrease. Each capping agent
728 < molecule reaches its maximum capacity for thermal
729 < conductance. Therefore, even higher solvent-capping agent contact
730 < would not offset this effect. Eventually, when butanethiol coverage
731 < continues to decrease, solvent-capping agent contact actually
732 < decreases with the disappearing of butanethiol molecules. In this
733 < case, $G$ decrease could not be offset but instead accelerated. [NEED
734 < SNAPSHOT SHOWING THE PHENOMENA / SLAB DENSITY ANALYSIS]
735 <
736 < A comparison of the results obtained from differenet organic solvents
737 < can also provide useful information of the interfacial thermal
738 < transport process. The deuterated hexane (UA) results do not appear to
739 < be much different from those of normal hexane (UA), given that
740 < butanethiol (UA) is non-deuterated for both solvents. These UA model
741 < studies, even though eliminating C-H vibration samplings, still have
742 < C-C vibrational frequencies different from each other. However, these
743 < differences in the infrared range do not seem to produce an observable
744 < difference for the results of $G$ (Figure \ref{uahxnua}).
745 <
746 < \begin{figure}
747 < \includegraphics[width=\linewidth]{uahxnua}
748 < \caption{Vibrational spectra obtained for normal (upper) and
749 <  deuterated (lower) hexane in Au-butanethiol/hexane
750 <  systems. Butanethiol spectra are shown as reference. Both hexane and
751 <  butanethiol were using United-Atom models.}
752 < \label{uahxnua}
753 < \end{figure}
754 <
755 < Furthermore, results for rigid body toluene solvent, as well as other
756 < UA-hexane solvents, are reasonable within the general experimental
757 < ranges\cite{Wilson:2002uq,cahill:793,PhysRevB.80.195406}. This
758 < suggests that explicit hydrogen might not be a required factor for
759 < modeling thermal transport phenomena of systems such as
760 < Au-thiol/organic solvent.
761 <
762 < However, results for Au-butanethiol/toluene do not show an identical
763 < trend with those for Au-butanethiol/hexane in that $G$ remains at
764 < approximately the same magnitue when butanethiol coverage differs from
765 < 25\% to 75\%. This might be rooted in the molecule shape difference
766 < for planar toluene and chain-like {\it n}-hexane. Due to this
767 < difference, toluene molecules have more difficulty in occupying
768 < relatively small gaps among capping agents when their coverage is not
769 < too low. Therefore, the solvent-capping agent contact may keep
770 < increasing until the capping agent coverage reaches a relatively low
771 < level. This becomes an offset for decreasing butanethiol molecules on
772 < its effect to the process of interfacial thermal transport. Thus, one
773 < can see a plateau of $G$ vs. butanethiol coverage in our results.
774 <
775 < \subsection{Influence of Chosen Molecule Model on $G$}
776 < In addition to UA solvent/capping agent models, AA models are included
777 < in our simulations as well. Besides simulations of the same (UA or AA)
778 < model for solvent and capping agent, different models can be applied
779 < to different components. Furthermore, regardless of models chosen,
780 < either the solvent or the capping agent can be deuterated, similar to
781 < the previous section. Table \ref{modelTest} summarizes the results of
782 < these studies.
783 <
784 < \begin{table*}
785 <  \begin{minipage}{\linewidth}
786 <    \begin{center}
787 <      
788 <      \caption{Computed interfacial thermal conductivity ($G$ and
789 <        $G^\prime$) values for interfaces using various models for
790 <        solvent and capping agent (or without capping agent) at
791 <        $\langle T\rangle\sim$200K. (D stands for deuterated solvent
792 <        or capping agent molecules; ``Avg.'' denotes results that are
793 <        averages of simulations under different $J_z$'s. Error
794 <        estimates indicated in parenthesis.)}
795 <      
796 <      \begin{tabular}{llccc}
797 <        \hline\hline
798 <        Butanethiol model & Solvent & $J_z$ & $G$ & $G^\prime$ \\
799 <        (or bare surface) & model & (GW/m$^2$) &
800 <        \multicolumn{2}{c}{(MW/m$^2$/K)} \\
801 <        \hline
802 <        UA    & UA hexane    & Avg. & 131(9)    & 87(10)    \\
803 <              & UA hexane(D) & 1.95 & 153(5)    & 136(13)   \\
804 <              & AA hexane    & Avg. & 131(6)    & 122(10)   \\
805 <              & UA toluene   & 1.96 & 187(16)   & 151(11)   \\
806 <              & AA toluene   & 1.89 & 200(36)   & 149(53)   \\
807 <        \hline
808 <        AA    & UA hexane    & 1.94 & 116(9)    & 129(8)    \\
809 <              & AA hexane    & Avg. & 442(14)   & 356(31)   \\
810 <              & AA hexane(D) & 1.93 & 222(12)   & 234(54)   \\
811 <              & UA toluene   & 1.98 & 125(25)   & 97(60)    \\
812 <              & AA toluene   & 3.79 & 487(56)   & 290(42)   \\
813 <        \hline
814 <        AA(D) & UA hexane    & 1.94 & 158(25)   & 172(4)    \\
815 <              & AA hexane    & 1.92 & 243(29)   & 191(11)   \\
816 <              & AA toluene   & 1.93 & 364(36)   & 322(67)   \\
817 <        \hline
818 <        bare  & UA hexane    & Avg. & 46.5(3.2) & 49.4(4.5) \\
819 <              & UA hexane(D) & 0.98 & 43.9(4.6) & 43.0(2.0) \\
820 <              & AA hexane    & 0.96 & 31.0(1.4) & 29.4(1.3) \\
821 <              & UA toluene   & 1.99 & 70.1(1.3) & 65.8(0.5) \\
822 <        \hline\hline
823 <      \end{tabular}
824 <      \label{modelTest}
825 <    \end{center}
826 <  \end{minipage}
827 < \end{table*}
828 <
829 < To facilitate direct comparison, the same system with differnt models
830 < for different components uses the same length scale for their
831 < simulation cells. Without the presence of capping agent, using
832 < different models for hexane yields similar results for both $G$ and
833 < $G^\prime$, and these two definitions agree with eath other very
834 < well. This indicates very weak interaction between the metal and the
835 < solvent, and is a typical case for acoustic impedance mismatch between
836 < these two phases.
837 <
838 < As for Au(111) surfaces completely covered by butanethiols, the choice
839 < of models for capping agent and solvent could impact the measurement
840 < of $G$ and $G^\prime$ quite significantly. For Au-butanethiol/hexane
841 < interfaces, using AA model for both butanethiol and hexane yields
842 < substantially higher conductivity values than using UA model for at
843 < least one component of the solvent and capping agent, which exceeds
844 < the general range of experimental measurement results. This is
845 < probably due to the classically treated C-H vibrations in the AA
846 < model, which should not be appreciably populated at normal
847 < temperatures. In comparison, once either the hexanes or the
848 < butanethiols are deuterated, one can see a significantly lower $G$ and
849 < $G^\prime$. In either of these cases, the C-H(D) vibrational overlap
850 < between the solvent and the capping agent is removed (Figure
851 < \ref{aahxntln}). Conclusively, the improperly treated C-H vibration in
852 < the AA model produced over-predicted results accordingly. Compared to
853 < the AA model, the UA model yields more reasonable results with higher
854 < computational efficiency.
855 <
856 < \begin{figure}
857 < \includegraphics[width=\linewidth]{aahxntln}
858 < \caption{Spectra obtained for All-Atom model Au-butanethil/solvent
859 <  systems. When butanethiol is deuterated (lower left), its
860 <  vibrational overlap with hexane would decrease significantly,
861 <  compared with normal butanethiol (upper left). However, this
862 <  dramatic change does not apply to toluene as much (right).}
863 < \label{aahxntln}
864 < \end{figure}
865 <
866 < However, for Au-butanethiol/toluene interfaces, having the AA
867 < butanethiol deuterated did not yield a significant change in the
868 < measurement results. Compared to the C-H vibrational overlap between
869 < hexane and butanethiol, both of which have alkyl chains, that overlap
870 < between toluene and butanethiol is not so significant and thus does
871 < not have as much contribution to the heat exchange
872 < process. Conversely, extra degrees of freedom such as the C-H
873 < vibrations could yield higher heat exchange rate between these two
874 < phases and result in a much higher conductivity.
875 <
876 < Although the QSC model for Au is known to predict an overly low value
877 < for bulk metal gold conductivity\cite{kuang:164101}, our computational
878 < results for $G$ and $G^\prime$ do not seem to be affected by this
879 < drawback of the model for metal. Instead, our results suggest that the
880 < modeling of interfacial thermal transport behavior relies mainly on
881 < the accuracy of the interaction descriptions between components
882 < occupying the interfaces.
883 <
884 < \subsection{Role of Capping Agent in Interfacial Thermal Conductance}
785 > \subsubsection{The role of specific vibrations}
786   The vibrational spectra for gold slabs in different environments are
787   shown as in Figure \ref{specAu}. Regardless of the presence of
788   solvent, the gold surfaces covered by butanethiol molecules, compared
# Line 892 | Line 793 | Simultaneously, the vibrational overlap between butane
793   simulations, the Au/S interfaces do not appear major heat barriers
794   compared to the butanethiol / solvent interfaces.
795  
796 + \subsubsection{Overlap of power spectrum}
797   Simultaneously, the vibrational overlap between butanethiol and
798   organic solvents suggests higher thermal exchange efficiency between
799   these two components. Even exessively high heat transport was observed
# Line 915 | Line 817 | capping agents.
817   \label{specAu}
818   \end{figure}
819  
820 < [MAY ADD COMPARISON OF AU SLAB WIDTHS]
820 > \subsubsection{Isotopic substitution and vibrational overlap}
821 > A comparison of the results obtained from the two different organic
822 > solvents can also provide useful information of the interfacial
823 > thermal transport process. The deuterated hexane (UA) results do not
824 > appear to be substantially different from those of normal hexane (UA),
825 > given that butanethiol (UA) is non-deuterated for both solvents. The
826 > UA models, even though they have eliminated C-H vibrational overlap,
827 > still have significant overlap in the infrared spectra.  Because
828 > differences in the infrared range do not seem to produce an observable
829 > difference for the results of $G$ (Figure \ref{uahxnua}).
830  
831 + \begin{figure}
832 + \includegraphics[width=\linewidth]{uahxnua}
833 + \caption{Vibrational spectra obtained for normal (upper) and
834 +  deuterated (lower) hexane in Au-butanethiol/hexane
835 +  systems. Butanethiol spectra are shown as reference. Both hexane and
836 +  butanethiol were using United-Atom models.}
837 + \label{uahxnua}
838 + \end{figure}
839 +
840   \section{Conclusions}
841   The NIVS algorithm we developed has been applied to simulations of
842   Au-butanethiol surfaces with organic solvents. This algorithm allows
# Line 956 | Line 876 | Au(111) surface\cite{vlugt:cpc2007154}. This differenc
876  
877   Vlugt {\it et al.} has investigated the surface thiol structures for
878   nanocrystal gold and pointed out that they differs from those of the
879 < Au(111) surface\cite{vlugt:cpc2007154}. This difference might lead to
880 < change of interfacial thermal transport behavior as well. To
881 < investigate this problem, an effective means to introduce thermal flux
882 < and measure the corresponding thermal gradient is desirable for
883 < simulating structures with spherical symmetry.
879 > Au(111) surface\cite{landman:1998,vlugt:cpc2007154}. This difference
880 > might lead to change of interfacial thermal transport behavior as
881 > well. To investigate this problem, an effective means to introduce
882 > thermal flux and measure the corresponding thermal gradient is
883 > desirable for simulating structures with spherical symmetry.
884  
885   \section{Acknowledgments}
886   Support for this project was provided by the National Science
887   Foundation under grant CHE-0848243. Computational time was provided by
888   the Center for Research Computing (CRC) at the University of Notre
889 < Dame. \newpage
889 > Dame.
890 > \newpage
891  
892   \bibliography{interfacial}
893  

Diff Legend

Removed lines
+ Added lines
< Changed lines
> Changed lines