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# Line 83 | Line 83 | thermal conductance. Wang {\it et al.} studied heat tr
83   traditional methods developed for homogeneous systems.
84  
85   Experimentally, various interfaces have been investigated for their
86 < thermal conductance. Wang {\it et al.} studied heat transport through
86 > thermal conductance. Cahill and coworkers studied nanoscale thermal
87 > transport from metal nanoparticle/fluid interfaces, to epitaxial
88 > TiN/single crystal oxides interfaces, to hydrophilic and hydrophobic
89 > interfaces between water and solids with different self-assembled
90 > monolayers.\cite{Wilson:2002uq,PhysRevB.67.054302,doi:10.1021/jp048375k,PhysRevLett.96.186101}
91 > Wang {\it et al.} studied heat transport through
92   long-chain hydrocarbon monolayers on gold substrate at individual
93   molecular level,\cite{Wang10082007} Schmidt {\it et al.} studied the
94   role of CTAB on thermal transport between gold nanorods and
# Line 106 | Line 111 | difficult to measure with Equilibrium MD or forward NE
111   measurements for heat conductance of interfaces between the capping
112   monolayer on Au and a solvent phase have yet to be studied with their
113   approach. The comparatively low thermal flux through interfaces is
114 < difficult to measure with Equilibrium MD or forward NEMD simulation
114 > difficult to measure with Equilibrium
115 > MD\cite{doi:10.1080/0026897031000068578} or forward NEMD simulation
116   methods. Therefore, the Reverse NEMD (RNEMD)
117   methods\cite{MullerPlathe:1997xw,kuang:164101} would have the
118   advantage of applying this difficult to measure flux (while measuring
# Line 194 | Line 200 | occurs at the Gibbs deviding surface (Figure \ref{demo
200   discrete on the two sides of the interface. $G$ can be calculated
201   using the applied thermal flux $J$ and the maximum temperature
202   difference measured along the thermal gradient max($\Delta T$), which
203 < occurs at the Gibbs deviding surface (Figure \ref{demoPic}):
203 > occurs at the Gibbs deviding surface (Figure \ref{demoPic}). This is
204 > known as the Kapitza conductance, which is the inverse of the Kapitza
205 > resistance.
206   \begin{equation}
207    G=\frac{J}{\Delta T}
208   \label{discreteG}
# Line 350 | Line 358 | particles of different species.
358    these simulations. The chemically-distinct sites (a-e) are expanded
359    in terms of constituent atoms for both United Atom (UA) and All Atom
360    (AA) force fields.  Most parameters are from
361 <  Refs. \protect\cite{TraPPE-UA.alkanes,TraPPE-UA.alkylbenzenes,TraPPE-UA.thiols} (UA) and \protect\cite{OPLSAA} (AA). Cross-interactions with the Au atoms are given in Table \ref{MnM}.}
361 >  Refs. \protect\cite{TraPPE-UA.alkanes,TraPPE-UA.alkylbenzenes,TraPPE-UA.thiols}
362 >  (UA) and \protect\cite{OPLSAA} (AA). Cross-interactions with the Au
363 >  atoms are given in Table \ref{MnM}.}
364   \label{demoMol}
365   \end{figure}
366  
# Line 485 | Line 495 | interfacial thermal conductivity was measured with our
495   A series of different initial conditions with a range of surface
496   coverages was prepared and solvated with various with both of the
497   solvent molecules. These systems were then equilibrated and their
498 < interfacial thermal conductivity was measured with our NIVS
498 > interfacial thermal conductivity was measured with the NIVS
499   algorithm. Figure \ref{coverage} demonstrates the trend of conductance
500   with respect to surface coverage.
501  
# Line 497 | Line 507 | with respect to surface coverage.
507   \label{coverage}
508   \end{figure}
509  
510 + In partially covered surfaces, the derivative definition for $G^\prime$ (Eq. \ref{derivativeG}) becomes difficult to apply, as the location of maximum change of $\lambda$ becomes washed out.  The discrete definition (Eq. \ref{discreteG}) is easier to apply, as the Gibbs dividing surface is still well-defined. Therefore, $G$ (not $G^\prime$) was used in this section.
511  
512 < In partially covered butanethiol on the Au(111) surface, the
502 < derivative definition for $G^\prime$ (Eq. \ref{derivativeG}) becomes
503 < difficult to apply, as the location of maximum change of $\lambda$
504 < becomes washed out.  The discrete definition (Eq. \ref{discreteG}) is
505 < easier to apply, as the Gibbs dividing surface is still
506 < well-defined. Therefore, $G$ (not $G^\prime$) was used in this
507 < section.
512 > From Figure \ref{coverage}, one can see the significance of the presence of capping agents. When even a small fraction of the Au(111) surface sites are covered with butanethiols, the conductivity exhibits an enhancement by at least a factor of 3.  Cappping agents are clearly playing a major role in thermal transport at metal / organic solvent surfaces.
513  
514 < From Figure \ref{coverage}, one can see the significance of the
510 < presence of capping agents. When even a small fraction of the Au(111)
511 < surface sites are covered with butanethiols, the conductivity exhibits
512 < an enhancement by at least a factor of 3. This indicates the important
513 < role cappping agents are playing for thermal transport at metal /
514 < organic solvent surfaces.
514 > We note a non-monotonic behavior in the interfacial conductance as a function of surface coverage. The maximum conductance (largest $G$) happens when the surfaces are about 75\% covered with butanethiol caps.  The reason for this behavior is not entirely clear.  One explanation is that incomplete butanethiol coverage allows small gaps between butanethiols to form. These gaps can be filled by transient solvent molecules.  These solvent molecules couple very strongly with the hot capping agent molecules near the surface, and can then carry away (diffusively) the excess thermal energy from the surface.
515  
516 < We note a non-monotonic behavior in the interfacial conductance as a
517 < function of surface coverage. The maximum conductance (largest $G$)
518 < happens when the surfaces are about 75\% covered with butanethiol
519 < caps.  The reason for this behavior is not entirely clear.  One
520 < explanation is that incomplete butanethiol coverage allows small gaps
521 < between butanethiols to form. These gaps can be filled by transient
522 < solvent molecules.  These solvent molecules couple very strongly with
523 < the hot capping agent molecules near the surface, and can then carry
524 < (diffusively) the excess thermal energy away from the surface.
516 > There appears to be a competition between the conduction of the thermal energy away from the surface by the capping agents (enhanced by greater coverage) and the coupling of the capping agents with the solvent (enhanced by interdigitation at lower coverages).  This competition would lead to the non-monotonic coverage behavior observed here.
517  
518 < There appears to be a competition between the conduction of the
527 < thermal energy away from the surface by the capping agents (enhanced
528 < by greater coverage) and the coupling of the capping agents with the
529 < solvent (enhanced by physical contact at lower coverages).  This
530 < competition would lead to the non-monotonic coverage behavior observed
531 < here.  
518 > Results for rigid body toluene solvent, as well as the UA hexane, are within the ranges expected from prior experimental work.\cite{Wilson:2002uq,cahill:793,PhysRevB.80.195406} This suggests that explicit hydrogen atoms might not be  required for modeling thermal transport in these systems.  C-H vibrational modes do not see significant excited state population at low temperatures, and are not likely to carry lower frequency excitations from the solid layer into the bulk liquid.
519  
520 < A comparison of the results obtained from the two different organic
534 < solvents can also provide useful information of the interfacial
535 < thermal transport process. The deuterated hexane (UA) results do not
536 < appear to be substantially different from those of normal hexane (UA),
537 < given that butanethiol (UA) is non-deuterated for both solvents. The
538 < UA models, even though they have eliminated C-H vibrational overlap,
539 < still have significant overlap in the infrared spectra.  Because
540 < differences in the infrared range do not seem to produce an observable
541 < difference for the results of $G$ (Figure \ref{uahxnua}).
520 > The toluene solvent does not exhibit the same behavior as hexane in that $G$ remains at approximately the same magnitude when the capping coverage increases from 25\% to 75\%.  Toluene, as a rigid planar molecule, cannot occupy the relatively small gaps between the capping agents as easily as the chain-like {\it n}-hexane.   The effect of solvent coupling to the capping agent is therefore weaker in toluene except at the very lowest coverage levels.  This effect counters the coverage-dependent conduction of heat away from the metal surface, leading to a much flatter $G$ vs. coverage trend than is observed in {\it n}-hexane.
521  
543 \begin{figure}
544 \includegraphics[width=\linewidth]{uahxnua}
545 \caption{Vibrational spectra obtained for normal (upper) and
546  deuterated (lower) hexane in Au-butanethiol/hexane
547  systems. Butanethiol spectra are shown as reference. Both hexane and
548  butanethiol were using United-Atom models.}
549 \label{uahxnua}
550 \end{figure}
551
552 Furthermore, results for rigid body toluene solvent, as well as other
553 UA-hexane solvents, are reasonable within the general experimental
554 ranges\cite{Wilson:2002uq,cahill:793,PhysRevB.80.195406}. This
555 suggests that explicit hydrogen might not be a required factor for
556 modeling thermal transport phenomena of systems such as
557 Au-thiol/organic solvent.
558
559 However, results for Au-butanethiol/toluene do not show an identical
560 trend with those for Au-butanethiol/hexane in that $G$ remains at
561 approximately the same magnitue when butanethiol coverage differs from
562 25\% to 75\%. This might be rooted in the molecule shape difference
563 for planar toluene and chain-like {\it n}-hexane. Due to this
564 difference, toluene molecules have more difficulty in occupying
565 relatively small gaps among capping agents when their coverage is not
566 too low. Therefore, the solvent-capping agent contact may keep
567 increasing until the capping agent coverage reaches a relatively low
568 level. This becomes an offset for decreasing butanethiol molecules on
569 its effect to the process of interfacial thermal transport. Thus, one
570 can see a plateau of $G$ vs. butanethiol coverage in our results.
571
522   \subsection{Effects due to Solvent \& Solvent Models}
523 < In addition to UA solvent/capping agent models, AA models are included
574 < in our simulations as well. Besides simulations of the same (UA or AA)
575 < model for solvent and capping agent, different models can be applied
576 < to different components. Furthermore, regardless of models chosen,
577 < either the solvent or the capping agent can be deuterated, similar to
578 < the previous section. Table \ref{modelTest} summarizes the results of
579 < these studies.
523 > In addition to UA solvent and capping agent models, AA models have also been included in our simulations.  In most of this work, the same (UA or AA) model for solvent and capping agent was used, but it is also possible to utilize different models for different components.  We have also included isotopic substitutions (Hydrogen to Deuterium) to decrease the explicit vibrational overlap between solvent and capping agent. Table \ref{modelTest} summarizes the results of these studies.
524  
525   \begin{table*}
526    \begin{minipage}{\linewidth}
527      \begin{center}
528        
529 <      \caption{Computed interfacial thermal conductivity ($G$ and
529 >      \caption{Computed interfacial thermal conductance ($G$ and
530          $G^\prime$) values for interfaces using various models for
531          solvent and capping agent (or without capping agent) at
532          $\langle T\rangle\sim$200K. (D stands for deuterated solvent
533          or capping agent molecules; ``Avg.'' denotes results that are
534 <        averages of simulations under different $J_z$'s. Error
535 <        estimates indicated in parenthesis.)}
534 >        averages of simulations under different applied thermal flux values $(J_z)$. Error
535 >        estimates are indicated in parentheses.)}
536        
537        \begin{tabular}{llccc}
538          \hline\hline
# Line 623 | Line 567 | To facilitate direct comparison, the same system with
567    \end{minipage}
568   \end{table*}
569  
570 < To facilitate direct comparison, the same system with differnt models
627 < for different components uses the same length scale for their
628 < simulation cells. Without the presence of capping agent, using
629 < different models for hexane yields similar results for both $G$ and
630 < $G^\prime$, and these two definitions agree with eath other very
631 < well. This indicates very weak interaction between the metal and the
632 < solvent, and is a typical case for acoustic impedance mismatch between
633 < these two phases.
570 > To facilitate direct comparison between force fields, systems with the same capping agent and solvent were prepared with the same length scales for the simulation cells.  
571  
572 < As for Au(111) surfaces completely covered by butanethiols, the choice
636 < of models for capping agent and solvent could impact the measurement
637 < of $G$ and $G^\prime$ quite significantly. For Au-butanethiol/hexane
638 < interfaces, using AA model for both butanethiol and hexane yields
639 < substantially higher conductivity values than using UA model for at
640 < least one component of the solvent and capping agent, which exceeds
641 < the general range of experimental measurement results. This is
642 < probably due to the classically treated C-H vibrations in the AA
643 < model, which should not be appreciably populated at normal
644 < temperatures. In comparison, once either the hexanes or the
645 < butanethiols are deuterated, one can see a significantly lower $G$ and
646 < $G^\prime$. In either of these cases, the C-H(D) vibrational overlap
647 < between the solvent and the capping agent is removed (Figure
648 < \ref{aahxntln}). Conclusively, the improperly treated C-H vibration in
649 < the AA model produced over-predicted results accordingly. Compared to
650 < the AA model, the UA model yields more reasonable results with higher
651 < computational efficiency.
572 > On bare metal / solvent surfaces, different force field models for hexane yield similar results for both $G$ and $G^\prime$, and these two definitions agree with each other very well. This is primarily an indicator of weak interactions between the metal and the solvent, and is a typical case for acoustic impedance mismatch between these two phases.
573  
574 + For the fully-covered surfaces, the choice of force field for the capping agent and solvent has a large impact on the calulated values of $G$ and $G^\prime$.  The AA thiol to AA solvent conductivities are much larger than their UA to UA counterparts, and these values exceed the experimental estimates by a large measure.  The AA force field allows significant energy to go into C-H (or C-D) stretching modes, and since these modes are high frequency, this non-quantum behavior is likely responsible for the overestimate of the conductivity.
575 +
576 + The similarity in the vibrational modes available to solvent and capping agent can be reduced by deuterating one of the two components.  Once either the hexanes or the butanethiols are deuterated, one can see a significantly lower $G$ and $G^\prime$ (Figure \ref{aahxntln}).  Compared to the AA model, the UA model yields more reasonable conductivity values with much higher computational efficiency.
577 +
578   \begin{figure}
579   \includegraphics[width=\linewidth]{aahxntln}
580 < \caption{Spectra obtained for All-Atom model Au-butanethil/solvent
580 > \caption{Spectra obtained for all-atom (AA) Au / butanethiol / solvent
581    systems. When butanethiol is deuterated (lower left), its
582 <  vibrational overlap with hexane would decrease significantly,
658 <  compared with normal butanethiol (upper left). However, this
659 <  dramatic change does not apply to toluene as much (right).}
582 >  vibrational overlap with hexane decreases significantly.  Since aromatic molecules and the butanethiol are vibrationally dissimilar, the change is not as dramatic when toluene is the solvent (right).}
583   \label{aahxntln}
584   \end{figure}
585  
586 < However, for Au-butanethiol/toluene interfaces, having the AA
664 < butanethiol deuterated did not yield a significant change in the
665 < measurement results. Compared to the C-H vibrational overlap between
666 < hexane and butanethiol, both of which have alkyl chains, that overlap
667 < between toluene and butanethiol is not so significant and thus does
668 < not have as much contribution to the heat exchange
669 < process. Conversely, extra degrees of freedom such as the C-H
670 < vibrations could yield higher heat exchange rate between these two
671 < phases and result in a much higher conductivity.
586 > For the Au / butanethiol / toluene interfaces, having the AA butanethiol deuterated did not yield a significant change in the measured conductance. Compared to the C-H vibrational overlap between hexane and butanethiol, both of which have alkyl chains, the overlap between toluene and butanethiol is not as significant and thus does not contribute as much to the heat exchange process.  The presence of extra degrees of freedom in the AA force field for toluene yields higher heat exchange rates between the two phases and results in a much higher conductivity than in the UA force field.
587  
588 < Although the QSC model for Au is known to predict an overly low value
589 < for bulk metal gold conductivity\cite{kuang:164101}, our computational
675 < results for $G$ and $G^\prime$ do not seem to be affected by this
676 < drawback of the model for metal. Instead, our results suggest that the
677 < modeling of interfacial thermal transport behavior relies mainly on
678 < the accuracy of the interaction descriptions between components
679 < occupying the interfaces.
588 > \subsubsection{Are electronic excitations in the metal important?}
589 > Because they lack electronic excitations, the QSC and related embedded atom method (EAM) models for gold are known to predict unreasonably low values for bulk conductivity ($\lambda$).\cite{kuang:164101,ISI:000207079300006,Clancy:1992} If the conductance between the phases ($G$) is governed primarily by phonon excitation (and not electronic degrees of freedom), one would expect a classical model to capture most of the interfacial thermal conductance.  Our results for $G$ and $G^\prime$ indicate that this is indeed the case, and suggest that the modeling of interfacial thermal transport depends primarily on the description of the interactions between the various components at the interface.  When the metal is chemically capped, the primary barrier to thermal conductivity appears to be the interface between the capping agent and the surrounding solvent, so the excitations in the metal have little impact on the value of $G$.
590  
591   \subsection{Effects due to methodology and simulation parameters}
592  
593 < We have varied our protocol or other parameters of the simulations in
684 < order to investigate how these factors would affect the measurement of
685 < $G$'s. It turned out that while some of these parameters would not
686 < affect the results substantially, some other changes to the
687 < simulations would have a significant impact on the measurement
688 < results.
593 > START HERE
594  
595 < In some of our simulations, we allowed $L_x$ and $L_y$ to change
691 < during equilibrating the liquid phase. Due to the stiffness of the
692 < crystalline Au structure, $L_x$ and $L_y$ would not change noticeably
693 < after equilibration. Although $L_z$ could fluctuate $\sim$1\% after a
694 < system is fully equilibrated in the NPT ensemble, this fluctuation, as
695 < well as those of $L_x$ and $L_y$ (which is significantly smaller),
696 < would not be magnified on the calculated $G$'s, as shown in Table
697 < \ref{AuThiolHexaneUA}. This insensivity to $L_i$ fluctuations allows
698 < reliable measurement of $G$'s without the necessity of extremely
699 < cautious equilibration process.
595 > We have varied our protocol or other parameters of the simulations in order to investigate how these factors would affect the computation of $G$.
596  
597 + We allowed $L_x$ and $L_y$ to change during equilibrating the liquid phase. Due to the stiffness of the crystalline Au structure, $L_x$ and $L_y$ would not change noticeably after equilibration. Although $L_z$ could fluctuate $\sim$1\% after a system is fully equilibrated in the NPT ensemble, this fluctuation, as well as those of $L_x$ and $L_y$ (which is significantly smaller), would not be magnified on the calculated $G$'s, as shown in Table \ref{AuThiolHexaneUA}. This insensivity to $L_i$ fluctuations allows reliable measurement of $G$'s without the necessity of extremely cautious equilibration process.
598 +
599   As stated in our computational details, the spacing filled with
600   solvent molecules can be chosen within a range. This allows some
601   change of solvent molecule numbers for the same Au-butanethiol
# Line 883 | Line 781 | From Figure \ref{coverage}, one can see the significan
781   \label{fourier}
782   \end{equation}
783  
886 From Figure \ref{coverage}, one can see the significance of the
887 presence of capping agents. Even when a fraction of the Au(111)
888 surface sites are covered with butanethiols, the conductivity would
889 see an enhancement by at least a factor of 3. This indicates the
890 important role cappping agent is playing for thermal transport
891 phenomena on metal / organic solvent surfaces.
784  
785 < Interestingly, as one could observe from our results, the maximum
894 < conductance enhancement (largest $G$) happens while the surfaces are
895 < about 75\% covered with butanethiols. This again indicates that
896 < solvent-capping agent contact has an important role of the thermal
897 < transport process. Slightly lower butanethiol coverage allows small
898 < gaps between butanethiols to form. And these gaps could be filled with
899 < solvent molecules, which acts like ``heat conductors'' on the
900 < surface. The higher degree of interaction between these solvent
901 < molecules and capping agents increases the enhancement effect and thus
902 < produces a higher $G$ than densely packed butanethiol arrays. However,
903 < once this maximum conductance enhancement is reached, $G$ decreases
904 < when butanethiol coverage continues to decrease. Each capping agent
905 < molecule reaches its maximum capacity for thermal
906 < conductance. Therefore, even higher solvent-capping agent contact
907 < would not offset this effect. Eventually, when butanethiol coverage
908 < continues to decrease, solvent-capping agent contact actually
909 < decreases with the disappearing of butanethiol molecules. In this
910 < case, $G$ decrease could not be offset but instead accelerated. [MAY NEED
911 < SNAPSHOT SHOWING THE PHENOMENA / SLAB DENSITY ANALYSIS]
912 <
913 < A comparison of the results obtained from differenet organic solvents
914 < can also provide useful information of the interfacial thermal
915 < transport process. The deuterated hexane (UA) results do not appear to
916 < be much different from those of normal hexane (UA), given that
917 < butanethiol (UA) is non-deuterated for both solvents. These UA model
918 < studies, even though eliminating C-H vibration samplings, still have
919 < C-C vibrational frequencies different from each other. However, these
920 < differences in the infrared range do not seem to produce an observable
921 < difference for the results of $G$ (Figure \ref{uahxnua}).
922 <
923 < \begin{figure}
924 < \includegraphics[width=\linewidth]{uahxnua}
925 < \caption{Vibrational spectra obtained for normal (upper) and
926 <  deuterated (lower) hexane in Au-butanethiol/hexane
927 <  systems. Butanethiol spectra are shown as reference. Both hexane and
928 <  butanethiol were using United-Atom models.}
929 < \label{uahxnua}
930 < \end{figure}
931 <
932 < Furthermore, results for rigid body toluene solvent, as well as other
933 < UA-hexane solvents, are reasonable within the general experimental
934 < ranges\cite{Wilson:2002uq,cahill:793,PhysRevB.80.195406}. This
935 < suggests that explicit hydrogen might not be a required factor for
936 < modeling thermal transport phenomena of systems such as
937 < Au-thiol/organic solvent.
938 <
939 < However, results for Au-butanethiol/toluene do not show an identical
940 < trend with those for Au-butanethiol/hexane in that $G$ remains at
941 < approximately the same magnitue when butanethiol coverage differs from
942 < 25\% to 75\%. This might be rooted in the molecule shape difference
943 < for planar toluene and chain-like {\it n}-hexane. Due to this
944 < difference, toluene molecules have more difficulty in occupying
945 < relatively small gaps among capping agents when their coverage is not
946 < too low. Therefore, the solvent-capping agent contact may keep
947 < increasing until the capping agent coverage reaches a relatively low
948 < level. This becomes an offset for decreasing butanethiol molecules on
949 < its effect to the process of interfacial thermal transport. Thus, one
950 < can see a plateau of $G$ vs. butanethiol coverage in our results.
951 <
952 < \subsection{Influence of Chosen Molecule Model on $G$}
953 < In addition to UA solvent/capping agent models, AA models are included
954 < in our simulations as well. Besides simulations of the same (UA or AA)
955 < model for solvent and capping agent, different models can be applied
956 < to different components. Furthermore, regardless of models chosen,
957 < either the solvent or the capping agent can be deuterated, similar to
958 < the previous section. Table \ref{modelTest} summarizes the results of
959 < these studies.
960 <
961 < \begin{table*}
962 <  \begin{minipage}{\linewidth}
963 <    \begin{center}
964 <      
965 <      \caption{Computed interfacial thermal conductivity ($G$ and
966 <        $G^\prime$) values for interfaces using various models for
967 <        solvent and capping agent (or without capping agent) at
968 <        $\langle T\rangle\sim$200K. (D stands for deuterated solvent
969 <        or capping agent molecules; ``Avg.'' denotes results that are
970 <        averages of simulations under different $J_z$'s. Error
971 <        estimates indicated in parenthesis.)}
972 <      
973 <      \begin{tabular}{llccc}
974 <        \hline\hline
975 <        Butanethiol model & Solvent & $J_z$ & $G$ & $G^\prime$ \\
976 <        (or bare surface) & model & (GW/m$^2$) &
977 <        \multicolumn{2}{c}{(MW/m$^2$/K)} \\
978 <        \hline
979 <        UA    & UA hexane    & Avg. & 131(9)    & 87(10)    \\
980 <              & UA hexane(D) & 1.95 & 153(5)    & 136(13)   \\
981 <              & AA hexane    & Avg. & 131(6)    & 122(10)   \\
982 <              & UA toluene   & 1.96 & 187(16)   & 151(11)   \\
983 <              & AA toluene   & 1.89 & 200(36)   & 149(53)   \\
984 <        \hline
985 <        AA    & UA hexane    & 1.94 & 116(9)    & 129(8)    \\
986 <              & AA hexane    & Avg. & 442(14)   & 356(31)   \\
987 <              & AA hexane(D) & 1.93 & 222(12)   & 234(54)   \\
988 <              & UA toluene   & 1.98 & 125(25)   & 97(60)    \\
989 <              & AA toluene   & 3.79 & 487(56)   & 290(42)   \\
990 <        \hline
991 <        AA(D) & UA hexane    & 1.94 & 158(25)   & 172(4)    \\
992 <              & AA hexane    & 1.92 & 243(29)   & 191(11)   \\
993 <              & AA toluene   & 1.93 & 364(36)   & 322(67)   \\
994 <        \hline
995 <        bare  & UA hexane    & Avg. & 46.5(3.2) & 49.4(4.5) \\
996 <              & UA hexane(D) & 0.98 & 43.9(4.6) & 43.0(2.0) \\
997 <              & AA hexane    & 0.96 & 31.0(1.4) & 29.4(1.3) \\
998 <              & UA toluene   & 1.99 & 70.1(1.3) & 65.8(0.5) \\
999 <        \hline\hline
1000 <      \end{tabular}
1001 <      \label{modelTest}
1002 <    \end{center}
1003 <  \end{minipage}
1004 < \end{table*}
1005 <
1006 < To facilitate direct comparison, the same system with differnt models
1007 < for different components uses the same length scale for their
1008 < simulation cells. Without the presence of capping agent, using
1009 < different models for hexane yields similar results for both $G$ and
1010 < $G^\prime$, and these two definitions agree with eath other very
1011 < well. This indicates very weak interaction between the metal and the
1012 < solvent, and is a typical case for acoustic impedance mismatch between
1013 < these two phases.
1014 <
1015 < As for Au(111) surfaces completely covered by butanethiols, the choice
1016 < of models for capping agent and solvent could impact the measurement
1017 < of $G$ and $G^\prime$ quite significantly. For Au-butanethiol/hexane
1018 < interfaces, using AA model for both butanethiol and hexane yields
1019 < substantially higher conductivity values than using UA model for at
1020 < least one component of the solvent and capping agent, which exceeds
1021 < the general range of experimental measurement results. This is
1022 < probably due to the classically treated C-H vibrations in the AA
1023 < model, which should not be appreciably populated at normal
1024 < temperatures. In comparison, once either the hexanes or the
1025 < butanethiols are deuterated, one can see a significantly lower $G$ and
1026 < $G^\prime$. In either of these cases, the C-H(D) vibrational overlap
1027 < between the solvent and the capping agent is removed (Figure
1028 < \ref{aahxntln}). Conclusively, the improperly treated C-H vibration in
1029 < the AA model produced over-predicted results accordingly. Compared to
1030 < the AA model, the UA model yields more reasonable results with higher
1031 < computational efficiency.
1032 <
1033 < \begin{figure}
1034 < \includegraphics[width=\linewidth]{aahxntln}
1035 < \caption{Spectra obtained for All-Atom model Au-butanethil/solvent
1036 <  systems. When butanethiol is deuterated (lower left), its
1037 <  vibrational overlap with hexane would decrease significantly,
1038 <  compared with normal butanethiol (upper left). However, this
1039 <  dramatic change does not apply to toluene as much (right).}
1040 < \label{aahxntln}
1041 < \end{figure}
1042 <
1043 < However, for Au-butanethiol/toluene interfaces, having the AA
1044 < butanethiol deuterated did not yield a significant change in the
1045 < measurement results. Compared to the C-H vibrational overlap between
1046 < hexane and butanethiol, both of which have alkyl chains, that overlap
1047 < between toluene and butanethiol is not so significant and thus does
1048 < not have as much contribution to the heat exchange
1049 < process. Conversely, extra degrees of freedom such as the C-H
1050 < vibrations could yield higher heat exchange rate between these two
1051 < phases and result in a much higher conductivity.
1052 <
1053 < Although the QSC model for Au is known to predict an overly low value
1054 < for bulk metal gold conductivity\cite{kuang:164101}, our computational
1055 < results for $G$ and $G^\prime$ do not seem to be affected by this
1056 < drawback of the model for metal. Instead, our results suggest that the
1057 < modeling of interfacial thermal transport behavior relies mainly on
1058 < the accuracy of the interaction descriptions between components
1059 < occupying the interfaces.
1060 <
1061 < \subsection{Role of Capping Agent in Interfacial Thermal Conductance}
785 > \subsubsection{The role of specific vibrations}
786   The vibrational spectra for gold slabs in different environments are
787   shown as in Figure \ref{specAu}. Regardless of the presence of
788   solvent, the gold surfaces covered by butanethiol molecules, compared
# Line 1093 | Line 817 | capping agents.
817   \label{specAu}
818   \end{figure}
819  
820 < [MAY ADD COMPARISON OF AU SLAB WIDTHS BUT NOT MUCH TO TALK ABOUT...]
820 > \subsubsection{Isotopic substitution and vibrational overlap}
821 > A comparison of the results obtained from the two different organic
822 > solvents can also provide useful information of the interfacial
823 > thermal transport process. The deuterated hexane (UA) results do not
824 > appear to be substantially different from those of normal hexane (UA),
825 > given that butanethiol (UA) is non-deuterated for both solvents. The
826 > UA models, even though they have eliminated C-H vibrational overlap,
827 > still have significant overlap in the infrared spectra.  Because
828 > differences in the infrared range do not seem to produce an observable
829 > difference for the results of $G$ (Figure \ref{uahxnua}).
830  
831 + \begin{figure}
832 + \includegraphics[width=\linewidth]{uahxnua}
833 + \caption{Vibrational spectra obtained for normal (upper) and
834 +  deuterated (lower) hexane in Au-butanethiol/hexane
835 +  systems. Butanethiol spectra are shown as reference. Both hexane and
836 +  butanethiol were using United-Atom models.}
837 + \label{uahxnua}
838 + \end{figure}
839 +
840   \section{Conclusions}
841   The NIVS algorithm we developed has been applied to simulations of
842   Au-butanethiol surfaces with organic solvents. This algorithm allows

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