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# Line 83 | Line 83 | thermal conductance. Wang {\it et al.} studied heat tr
83   traditional methods developed for homogeneous systems.
84  
85   Experimentally, various interfaces have been investigated for their
86 < thermal conductance. Wang {\it et al.} studied heat transport through
86 > thermal conductance. Cahill and coworkers studied nanoscale thermal
87 > transport from metal nanoparticle/fluid interfaces, to epitaxial
88 > TiN/single crystal oxides interfaces, to hydrophilic and hydrophobic
89 > interfaces between water and solids with different self-assembled
90 > monolayers.\cite{Wilson:2002uq,PhysRevB.67.054302,doi:10.1021/jp048375k,PhysRevLett.96.186101}
91 > Wang {\it et al.} studied heat transport through
92   long-chain hydrocarbon monolayers on gold substrate at individual
93   molecular level,\cite{Wang10082007} Schmidt {\it et al.} studied the
94   role of CTAB on thermal transport between gold nanorods and
# Line 106 | Line 111 | difficult to measure with Equilibrium MD or forward NE
111   measurements for heat conductance of interfaces between the capping
112   monolayer on Au and a solvent phase have yet to be studied with their
113   approach. The comparatively low thermal flux through interfaces is
114 < difficult to measure with Equilibrium MD or forward NEMD simulation
114 > difficult to measure with Equilibrium
115 > MD\cite{doi:10.1080/0026897031000068578} or forward NEMD simulation
116   methods. Therefore, the Reverse NEMD (RNEMD)
117   methods\cite{MullerPlathe:1997xw,kuang:164101} would have the
118   advantage of applying this difficult to measure flux (while measuring
# Line 187 | Line 193 | temperature of the two separated phases.
193   where ${E_{total}}$ is the total imposed non-physical kinetic energy
194   transfer during the simulation and ${\langle T_\mathrm{hot}\rangle}$
195   and ${\langle T_\mathrm{cold}\rangle}$ are the average observed
196 < temperature of the two separated phases.
196 > temperature of the two separated phases.  For an applied flux $J_z$
197 > operating over a simulation time $t$ on a periodically-replicated slab
198 > of dimensions $L_x \times L_y$, $E_{total} = J_z *(t)*(2 L_x L_y)$.
199  
200   When the interfacial conductance is {\it not} small, there are two
201   ways to define $G$. One common way is to assume the temperature is
202   discrete on the two sides of the interface. $G$ can be calculated
203   using the applied thermal flux $J$ and the maximum temperature
204   difference measured along the thermal gradient max($\Delta T$), which
205 < occurs at the Gibbs deviding surface (Figure \ref{demoPic}):
205 > occurs at the Gibbs deviding surface (Figure \ref{demoPic}). This is
206 > known as the Kapitza conductance, which is the inverse of the Kapitza
207 > resistance.
208   \begin{equation}
209    G=\frac{J}{\Delta T}
210   \label{discreteG}
# Line 350 | Line 360 | particles of different species.
360    these simulations. The chemically-distinct sites (a-e) are expanded
361    in terms of constituent atoms for both United Atom (UA) and All Atom
362    (AA) force fields.  Most parameters are from
363 <  Refs. \protect\cite{TraPPE-UA.alkanes,TraPPE-UA.alkylbenzenes,TraPPE-UA.thiols} (UA) and \protect\cite{OPLSAA} (AA). Cross-interactions with the Au atoms are given in Table \ref{MnM}.}
363 >  Refs. \protect\cite{TraPPE-UA.alkanes,TraPPE-UA.alkylbenzenes,TraPPE-UA.thiols}
364 >  (UA) and \protect\cite{OPLSAA} (AA). Cross-interactions with the Au
365 >  atoms are given in Table \ref{MnM}.}
366   \label{demoMol}
367   \end{figure}
368  
# Line 470 | Line 482 | our simulations.
482    \end{minipage}
483   \end{table*}
484  
473 \subsection{Vibrational Power Spectrum}
485  
486 < To investigate the mechanism of interfacial thermal conductance, the
487 < vibrational power spectrum was computed. Power spectra were taken for
488 < individual components in different simulations. To obtain these
489 < spectra, simulations were run after equilibration, in the NVE
490 < ensemble, and without a thermal gradient. Snapshots of configurations
491 < were collected at a frequency that is higher than that of the fastest
492 < vibrations occuring in the simulations. With these configurations, the
493 < velocity auto-correlation functions can be computed:
483 < \begin{equation}
484 < C_A (t) = \langle\vec{v}_A (t)\cdot\vec{v}_A (0)\rangle
485 < \label{vCorr}
486 < \end{equation}
487 < The power spectrum is constructed via a Fourier transform of the
488 < symmetrized velocity autocorrelation function,
489 < \begin{equation}
490 <  \hat{f}(\omega) =
491 <  \int_{-\infty}^{\infty} C_A (t) e^{-2\pi it\omega}\,dt
492 < \label{fourier}
493 < \end{equation}
494 <
495 < \section{Results and Discussions}
496 < In what follows, how the parameters and protocol of simulations would
497 < affect the measurement of $G$'s is first discussed. With a reliable
498 < protocol and set of parameters, the influence of capping agent
499 < coverage on thermal conductance is investigated. Besides, different
500 < force field models for both solvents and selected deuterated models
501 < were tested and compared. Finally, a summary of the role of capping
502 < agent in the interfacial thermal transport process is given.
486 > \section{Results}
487 > There are many factors contributing to the measured interfacial
488 > conductance; some of these factors are physically motivated
489 > (e.g. coverage of the surface by the capping agent coverage and
490 > solvent identity), while some are governed by parameters of the
491 > methodology (e.g. applied flux and the formulas used to obtain the
492 > conductance). In this section we discuss the major physical and
493 > calculational effects on the computed conductivity.
494  
495 < \subsection{How Simulation Parameters Affects $G$}
505 < We have varied our protocol or other parameters of the simulations in
506 < order to investigate how these factors would affect the measurement of
507 < $G$'s. It turned out that while some of these parameters would not
508 < affect the results substantially, some other changes to the
509 < simulations would have a significant impact on the measurement
510 < results.
495 > \subsection{Effects due to capping agent coverage}
496  
497 < In some of our simulations, we allowed $L_x$ and $L_y$ to change
498 < during equilibrating the liquid phase. Due to the stiffness of the
499 < crystalline Au structure, $L_x$ and $L_y$ would not change noticeably
500 < after equilibration. Although $L_z$ could fluctuate $\sim$1\% after a
501 < system is fully equilibrated in the NPT ensemble, this fluctuation, as
502 < well as those of $L_x$ and $L_y$ (which is significantly smaller),
518 < would not be magnified on the calculated $G$'s, as shown in Table
519 < \ref{AuThiolHexaneUA}. This insensivity to $L_i$ fluctuations allows
520 < reliable measurement of $G$'s without the necessity of extremely
521 < cautious equilibration process.
497 > A series of different initial conditions with a range of surface
498 > coverages was prepared and solvated with various with both of the
499 > solvent molecules. These systems were then equilibrated and their
500 > interfacial thermal conductivity was measured with the NIVS
501 > algorithm. Figure \ref{coverage} demonstrates the trend of conductance
502 > with respect to surface coverage.
503  
504 < As stated in our computational details, the spacing filled with
505 < solvent molecules can be chosen within a range. This allows some
506 < change of solvent molecule numbers for the same Au-butanethiol
507 < surfaces. We did this study on our Au-butanethiol/hexane
508 < simulations. Nevertheless, the results obtained from systems of
509 < different $N_{hexane}$ did not indicate that the measurement of $G$ is
510 < susceptible to this parameter. For computational efficiency concern,
530 < smaller system size would be preferable, given that the liquid phase
531 < structure is not affected.
504 > \begin{figure}
505 > \includegraphics[width=\linewidth]{coverage}
506 > \caption{Comparison of interfacial thermal conductivity ($G$) values
507 >  for the Au-butanethiol/solvent interface with various UA models and
508 >  different capping agent coverages at $\langle T\rangle\sim$200K.}
509 > \label{coverage}
510 > \end{figure}
511  
512 < Our NIVS algorithm allows change of unphysical thermal flux both in
513 < direction and in quantity. This feature extends our investigation of
514 < interfacial thermal conductance. However, the magnitude of this
515 < thermal flux is not arbitary if one aims to obtain a stable and
516 < reliable thermal gradient. A temperature profile would be
517 < substantially affected by noise when $|J_z|$ has a much too low
518 < magnitude; while an excessively large $|J_z|$ that overwhelms the
519 < conductance capacity of the interface would prevent a thermal gradient
520 < to reach a stablized steady state. NIVS has the advantage of allowing
521 < $J$ to vary in a wide range such that the optimal flux range for $G$
522 < measurement can generally be simulated by the algorithm. Within the
523 < optimal range, we were able to study how $G$ would change according to
524 < the thermal flux across the interface. For our simulations, we denote
525 < $J_z$ to be positive when the physical thermal flux is from the liquid
526 < to metal, and negative vice versa. The $G$'s measured under different
527 < $J_z$ is listed in Table \ref{AuThiolHexaneUA} and
528 < \ref{AuThiolToluene}. These results do not suggest that $G$ is
529 < dependent on $J_z$ within this flux range. The linear response of flux
530 < to thermal gradient simplifies our investigations in that we can rely
531 < on $G$ measurement with only a couple $J_z$'s and do not need to test
532 < a large series of fluxes.
512 > In partially covered surfaces, the derivative definition for
513 > $G^\prime$ (Eq. \ref{derivativeG}) becomes difficult to apply, as the
514 > location of maximum change of $\lambda$ becomes washed out.  The
515 > discrete definition (Eq. \ref{discreteG}) is easier to apply, as the
516 > Gibbs dividing surface is still well-defined. Therefore, $G$ (not
517 > $G^\prime$) was used in this section.
518 >
519 > From Figure \ref{coverage}, one can see the significance of the
520 > presence of capping agents. When even a small fraction of the Au(111)
521 > surface sites are covered with butanethiols, the conductivity exhibits
522 > an enhancement by at least a factor of 3.  Cappping agents are clearly
523 > playing a major role in thermal transport at metal / organic solvent
524 > surfaces.
525 >
526 > We note a non-monotonic behavior in the interfacial conductance as a
527 > function of surface coverage. The maximum conductance (largest $G$)
528 > happens when the surfaces are about 75\% covered with butanethiol
529 > caps.  The reason for this behavior is not entirely clear.  One
530 > explanation is that incomplete butanethiol coverage allows small gaps
531 > between butanethiols to form. These gaps can be filled by transient
532 > solvent molecules.  These solvent molecules couple very strongly with
533 > the hot capping agent molecules near the surface, and can then carry
534 > away (diffusively) the excess thermal energy from the surface.
535 >
536 > There appears to be a competition between the conduction of the
537 > thermal energy away from the surface by the capping agents (enhanced
538 > by greater coverage) and the coupling of the capping agents with the
539 > solvent (enhanced by interdigitation at lower coverages).  This
540 > competition would lead to the non-monotonic coverage behavior observed
541 > here.
542 >
543 > Results for rigid body toluene solvent, as well as the UA hexane, are
544 > within the ranges expected from prior experimental
545 > work.\cite{Wilson:2002uq,cahill:793,PhysRevB.80.195406} This suggests
546 > that explicit hydrogen atoms might not be required for modeling
547 > thermal transport in these systems.  C-H vibrational modes do not see
548 > significant excited state population at low temperatures, and are not
549 > likely to carry lower frequency excitations from the solid layer into
550 > the bulk liquid.
551 >
552 > The toluene solvent does not exhibit the same behavior as hexane in
553 > that $G$ remains at approximately the same magnitude when the capping
554 > coverage increases from 25\% to 75\%.  Toluene, as a rigid planar
555 > molecule, cannot occupy the relatively small gaps between the capping
556 > agents as easily as the chain-like {\it n}-hexane.  The effect of
557 > solvent coupling to the capping agent is therefore weaker in toluene
558 > except at the very lowest coverage levels.  This effect counters the
559 > coverage-dependent conduction of heat away from the metal surface,
560 > leading to a much flatter $G$ vs. coverage trend than is observed in
561 > {\it n}-hexane.
562 >
563 > \subsection{Effects due to Solvent \& Solvent Models}
564 > In addition to UA solvent and capping agent models, AA models have
565 > also been included in our simulations.  In most of this work, the same
566 > (UA or AA) model for solvent and capping agent was used, but it is
567 > also possible to utilize different models for different components.
568 > We have also included isotopic substitutions (Hydrogen to Deuterium)
569 > to decrease the explicit vibrational overlap between solvent and
570 > capping agent. Table \ref{modelTest} summarizes the results of these
571 > studies.
572 >
573 > \begin{table*}
574 >  \begin{minipage}{\linewidth}
575 >    \begin{center}
576 >      
577 >      \caption{Computed interfacial thermal conductance ($G$ and
578 >        $G^\prime$) values for interfaces using various models for
579 >        solvent and capping agent (or without capping agent) at
580 >        $\langle T\rangle\sim$200K. (D stands for deuterated solvent
581 >        or capping agent molecules; ``Avg.'' denotes results that are
582 >        averages of simulations under different applied thermal flux
583 >        values $(J_z)$. Error estimates are indicated in
584 >        parentheses.)}
585 >      
586 >      \begin{tabular}{llccc}
587 >        \hline\hline
588 >        Butanethiol model & Solvent & $J_z$ & $G$ & $G^\prime$ \\
589 >        (or bare surface) & model & (GW/m$^2$) &
590 >        \multicolumn{2}{c}{(MW/m$^2$/K)} \\
591 >        \hline
592 >        UA    & UA hexane    & Avg. & 131(9)    & 87(10)    \\
593 >              & UA hexane(D) & 1.95 & 153(5)    & 136(13)   \\
594 >              & AA hexane    & Avg. & 131(6)    & 122(10)   \\
595 >              & UA toluene   & 1.96 & 187(16)   & 151(11)   \\
596 >              & AA toluene   & 1.89 & 200(36)   & 149(53)   \\
597 >        \hline
598 >        AA    & UA hexane    & 1.94 & 116(9)    & 129(8)    \\
599 >              & AA hexane    & Avg. & 442(14)   & 356(31)   \\
600 >              & AA hexane(D) & 1.93 & 222(12)   & 234(54)   \\
601 >              & UA toluene   & 1.98 & 125(25)   & 97(60)    \\
602 >              & AA toluene   & 3.79 & 487(56)   & 290(42)   \\
603 >        \hline
604 >        AA(D) & UA hexane    & 1.94 & 158(25)   & 172(4)    \\
605 >              & AA hexane    & 1.92 & 243(29)   & 191(11)   \\
606 >              & AA toluene   & 1.93 & 364(36)   & 322(67)   \\
607 >        \hline
608 >        bare  & UA hexane    & Avg. & 46.5(3.2) & 49.4(4.5) \\
609 >              & UA hexane(D) & 0.98 & 43.9(4.6) & 43.0(2.0) \\
610 >              & AA hexane    & 0.96 & 31.0(1.4) & 29.4(1.3) \\
611 >              & UA toluene   & 1.99 & 70.1(1.3) & 65.8(0.5) \\
612 >        \hline\hline
613 >      \end{tabular}
614 >      \label{modelTest}
615 >    \end{center}
616 >  \end{minipage}
617 > \end{table*}
618  
619 + To facilitate direct comparison between force fields, systems with the
620 + same capping agent and solvent were prepared with the same length
621 + scales for the simulation cells.
622 +
623 + On bare metal / solvent surfaces, different force field models for
624 + hexane yield similar results for both $G$ and $G^\prime$, and these
625 + two definitions agree with each other very well. This is primarily an
626 + indicator of weak interactions between the metal and the solvent, and
627 + is a typical case for acoustic impedance mismatch between these two
628 + phases.  
629 +
630 + For the fully-covered surfaces, the choice of force field for the
631 + capping agent and solvent has a large impact on the calulated values
632 + of $G$ and $G^\prime$.  The AA thiol to AA solvent conductivities are
633 + much larger than their UA to UA counterparts, and these values exceed
634 + the experimental estimates by a large measure.  The AA force field
635 + allows significant energy to go into C-H (or C-D) stretching modes,
636 + and since these modes are high frequency, this non-quantum behavior is
637 + likely responsible for the overestimate of the conductivity.  Compared
638 + to the AA model, the UA model yields more reasonable conductivity
639 + values with much higher computational efficiency.
640 +
641 + \subsubsection{Are electronic excitations in the metal important?}
642 + Because they lack electronic excitations, the QSC and related embedded
643 + atom method (EAM) models for gold are known to predict unreasonably
644 + low values for bulk conductivity
645 + ($\lambda$).\cite{kuang:164101,ISI:000207079300006,Clancy:1992} If the
646 + conductance between the phases ($G$) is governed primarily by phonon
647 + excitation (and not electronic degrees of freedom), one would expect a
648 + classical model to capture most of the interfacial thermal
649 + conductance.  Our results for $G$ and $G^\prime$ indicate that this is
650 + indeed the case, and suggest that the modeling of interfacial thermal
651 + transport depends primarily on the description of the interactions
652 + between the various components at the interface.  When the metal is
653 + chemically capped, the primary barrier to thermal conductivity appears
654 + to be the interface between the capping agent and the surrounding
655 + solvent, so the excitations in the metal have little impact on the
656 + value of $G$.
657 +
658 + \subsection{Effects due to methodology and simulation parameters}
659 +
660 + We have varied the parameters of the simulations in order to
661 + investigate how these factors would affect the computation of $G$.  Of
662 + particular interest are: 1) the length scale for the applied thermal
663 + gradient (modified by increasing the amount of solvent in the system),
664 + 2) the sign and magnitude of the applied thermal flux, 3) the average
665 + temperature of the simulation (which alters the solvent density during
666 + equilibration), and 4) the definition of the interfacial conductance
667 + (Eqs. (\ref{discreteG}) or (\ref{derivativeG})) used in the
668 + calculation.
669 +
670 + Systems of different lengths were prepared by altering the number of
671 + solvent molecules and extending the length of the box along the $z$
672 + axis to accomodate the extra solvent.  Equilibration at the same
673 + temperature and pressure conditions led to nearly identical surface
674 + areas ($L_x$ and $L_y$) available to the metal and capping agent,
675 + while the extra solvent served mainly to lengthen the axis that was
676 + used to apply the thermal flux.  For a given value of the applied
677 + flux, the different $z$ length scale has only a weak effect on the
678 + computed conductivities (Table \ref{AuThiolHexaneUA}).
679 +
680 + \subsubsection{Effects of applied flux}
681 + The NIVS algorithm allows changes in both the sign and magnitude of
682 + the applied flux.  It is possible to reverse the direction of heat
683 + flow simply by changing the sign of the flux, and thermal gradients
684 + which would be difficult to obtain experimentally ($5$ K/\AA) can be
685 + easily simulated.  However, the magnitude of the applied flux is not
686 + arbitary if one aims to obtain a stable and reliable thermal gradient.
687 + A temperature gradient can be lost in the noise if $|J_z|$ is too
688 + small, and excessive $|J_z|$ values can cause phase transitions if the
689 + extremes of the simulation cell become widely separated in
690 + temperature.  Also, if $|J_z|$ is too large for the bulk conductivity
691 + of the materials, the thermal gradient will never reach a stable
692 + state.  
693 +
694 + Within a reasonable range of $J_z$ values, we were able to study how
695 + $G$ changes as a function of this flux.  In what follows, we use
696 + positive $J_z$ values to denote the case where energy is being
697 + transferred by the method from the metal phase and into the liquid.
698 + The resulting gradient therefore has a higher temperature in the
699 + liquid phase.  Negative flux values reverse this transfer, and result
700 + in higher temperature metal phases.  The conductance measured under
701 + different applied $J_z$ values is listed in Tables
702 + \ref{AuThiolHexaneUA} and \ref{AuThiolToluene}. These results do not
703 + indicate that $G$ depends strongly on $J_z$ within this flux
704 + range. The linear response of flux to thermal gradient simplifies our
705 + investigations in that we can rely on $G$ measurement with only a
706 + small number $J_z$ values.  
707 +
708   \begin{table*}
709    \begin{minipage}{\linewidth}
710      \begin{center}
# Line 563 | Line 716 | a large series of fluxes.
716        
717        \begin{tabular}{ccccccc}
718          \hline\hline
719 <        $\langle T\rangle$ & $N_{hexane}$ & Fixed & $\rho_{hexane}$ &
719 >        $\langle T\rangle$ & $N_{hexane}$  & $\rho_{hexane}$ &
720          $J_z$ & $G$ & $G^\prime$ \\
721 <        (K) & & $L_x$ \& $L_y$? & (g/cm$^3$) & (GW/m$^2$) &
721 >        (K) &  & (g/cm$^3$) & (GW/m$^2$) &
722          \multicolumn{2}{c}{(MW/m$^2$/K)} \\
723          \hline
724 <        200 & 266 & No  & 0.672 & -0.96 & 102(3)    & 80.0(0.8) \\
725 <            & 200 & Yes & 0.694 &  1.92 & 129(11)   & 87.3(0.3) \\
726 <            &     & Yes & 0.672 &  1.93 & 131(16)   & 78(13)    \\
727 <            &     & No  & 0.688 &  0.96 & 125(16)   & 90.2(15)  \\
728 <            &     &     &       &  1.91 & 139(10)   & 101(10)   \\
729 <            &     &     &       &  2.83 & 141(6)    & 89.9(9.8) \\
577 <            & 166 & Yes & 0.679 &  0.97 & 115(19)   & 69(18)    \\
578 <            &     &     &       &  1.94 & 125(9)    & 87.1(0.2) \\
579 <            &     & No  & 0.681 &  0.97 & 141(30)   & 78(22)    \\
580 <            &     &     &       &  1.92 & 138(4)    & 98.9(9.5) \\
724 >        200 & 266 &  0.672 & -0.96 & 102(3)    & 80.0(0.8) \\
725 >            & 200 &  0.688 &  0.96 & 125(16)   & 90.2(15)  \\
726 >            &     &        &  1.91 & 139(10)   & 101(10)   \\
727 >            &     &        &  2.83 & 141(6)    & 89.9(9.8) \\
728 >            & 166 &  0.681 &  0.97 & 141(30)   & 78(22)    \\
729 >            &     &        &  1.92 & 138(4)    & 98.9(9.5) \\
730          \hline
731 <        250 & 200 & No  & 0.560 &  0.96 & 75(10)    & 61.8(7.3) \\
732 <            &     &     &       & -0.95 & 49.4(0.3) & 45.7(2.1) \\
733 <            & 166 & Yes & 0.570 &  0.98 & 79.0(3.5) & 62.9(3.0) \\
734 <            &     & No  & 0.569 &  0.97 & 80.3(0.6) & 67(11)    \\
735 <            &     &     &       &  1.44 & 76.2(5.0) & 64.8(3.8) \\
736 <            &     &     &       & -0.95 & 56.4(2.5) & 54.4(1.1) \\
588 <            &     &     &       & -1.85 & 47.8(1.1) & 53.5(1.5) \\
731 >        250 & 200 &  0.560 &  0.96 & 75(10)    & 61.8(7.3) \\
732 >            &     &        & -0.95 & 49.4(0.3) & 45.7(2.1) \\
733 >            & 166 &  0.569 &  0.97 & 80.3(0.6) & 67(11)    \\
734 >            &     &        &  1.44 & 76.2(5.0) & 64.8(3.8) \\
735 >            &     &        & -0.95 & 56.4(2.5) & 54.4(1.1) \\
736 >            &     &        & -1.85 & 47.8(1.1) & 53.5(1.5) \\
737          \hline\hline
738        \end{tabular}
739        \label{AuThiolHexaneUA}
# Line 593 | Line 741 | Furthermore, we also attempted to increase system aver
741    \end{minipage}
742   \end{table*}
743  
744 < Furthermore, we also attempted to increase system average temperatures
745 < to above 200K. These simulations are first equilibrated in the NPT
746 < ensemble under normal pressure. As stated above, the TraPPE-UA model
747 < for hexane tends to predict a lower boiling point. In our simulations,
748 < hexane had diffculty to remain in liquid phase when NPT equilibration
749 < temperature is higher than 250K. Additionally, the equilibrated liquid
750 < hexane density under 250K becomes lower than experimental value. This
751 < expanded liquid phase leads to lower contact between hexane and
752 < butanethiol as well.[MAY NEED SLAB DENSITY FIGURE]
605 < And this reduced contact would
606 < probably be accountable for a lower interfacial thermal conductance,
607 < as shown in Table \ref{AuThiolHexaneUA}.
744 > The sign of $J_z$ is a different matter, however, as this can alter
745 > the temperature on the two sides of the interface. The average
746 > temperature values reported are for the entire system, and not for the
747 > liquid phase, so at a given $\langle T \rangle$, the system with
748 > positive $J_z$ has a warmer liquid phase.  This means that if the
749 > liquid carries thermal energy via convective transport, {\it positive}
750 > $J_z$ values will result in increased molecular motion on the liquid
751 > side of the interface, and this will increase the measured
752 > conductivity.
753  
754 < A similar study for TraPPE-UA toluene agrees with the above result as
610 < well. Having a higher boiling point, toluene tends to remain liquid in
611 < our simulations even equilibrated under 300K in NPT
612 < ensembles. Furthermore, the expansion of the toluene liquid phase is
613 < not as significant as that of the hexane. This prevents severe
614 < decrease of liquid-capping agent contact and the results (Table
615 < \ref{AuThiolToluene}) show only a slightly decreased interface
616 < conductance. Therefore, solvent-capping agent contact should play an
617 < important role in the thermal transport process across the interface
618 < in that higher degree of contact could yield increased conductance.
754 > \subsubsection{Effects due to average temperature}
755  
756 + We also studied the effect of average system temperature on the
757 + interfacial conductance.  The simulations are first equilibrated in
758 + the NPT ensemble at 1 atm.  The TraPPE-UA model for hexane tends to
759 + predict a lower boiling point (and liquid state density) than
760 + experiments.  This lower-density liquid phase leads to reduced contact
761 + between the hexane and butanethiol, and this accounts for our
762 + observation of lower conductance at higher temperatures as shown in
763 + Table \ref{AuThiolHexaneUA}.  In raising the average temperature from
764 + 200K to 250K, the density drop of ~20\% in the solvent phase leads to
765 + a ~65\% drop in the conductance.
766 +
767 + Similar behavior is observed in the TraPPE-UA model for toluene,
768 + although this model has better agreement with the experimental
769 + densities of toluene.  The expansion of the toluene liquid phase is
770 + not as significant as that of the hexane (8.3\% over 100K), and this
771 + limits the effect to ~20\% drop in thermal conductivity  (Table
772 + \ref{AuThiolToluene}).
773 +
774 + Although we have not mapped out the behavior at a large number of
775 + temperatures, is clear that there will be a strong temperature
776 + dependence in the interfacial conductance when the physical properties
777 + of one side of the interface (notably the density) change rapidly as a
778 + function of temperature.
779 +
780   \begin{table*}
781    \begin{minipage}{\linewidth}
782      \begin{center}
# Line 643 | Line 803 | Besides lower interfacial thermal conductance, surface
803    \end{minipage}
804   \end{table*}
805  
806 < Besides lower interfacial thermal conductance, surfaces in relatively
807 < high temperatures are susceptible to reconstructions, when
808 < butanethiols have a full coverage on the Au(111) surface. These
809 < reconstructions include surface Au atoms migrated outward to the S
810 < atom layer, and butanethiol molecules embedded into the original
811 < surface Au layer. The driving force for this behavior is the strong
812 < Au-S interactions in our simulations. And these reconstructions lead
813 < to higher ratio of Au-S attraction and thus is energetically
814 < favorable. Furthermore, this phenomenon agrees with experimental
815 < results\cite{doi:10.1021/j100035a033,doi:10.1021/la026493y}. Vlugt
816 < {\it et al.} had kept their Au(111) slab rigid so that their
817 < simulations can reach 300K without surface reconstructions. Without
818 < this practice, simulating 100\% thiol covered interfaces under higher
819 < temperatures could hardly avoid surface reconstructions. However, our
820 < measurement is based on assuming homogeneity on $x$ and $y$ dimensions
821 < so that measurement of $T$ at particular $z$ would be an effective
822 < average of the particles of the same type. Since surface
663 < reconstructions could eliminate the original $x$ and $y$ dimensional
664 < homogeneity, measurement of $G$ is more difficult to conduct under
665 < higher temperatures. Therefore, most of our measurements are
666 < undertaken at $\langle T\rangle\sim$200K.
806 > Besides the lower interfacial thermal conductance, surfaces at
807 > relatively high temperatures are susceptible to reconstructions,
808 > particularly when butanethiols fully cover the Au(111) surface. These
809 > reconstructions include surface Au atoms which migrate outward to the
810 > S atom layer, and butanethiol molecules which embed into the surface
811 > Au layer. The driving force for this behavior is the strong Au-S
812 > interactions which are modeled here with a deep Lennard-Jones
813 > potential. This phenomenon agrees with reconstructions that have beeen
814 > experimentally
815 > observed.\cite{doi:10.1021/j100035a033,doi:10.1021/la026493y}.  Vlugt
816 > {\it et al.} kept their Au(111) slab rigid so that their simulations
817 > could reach 300K without surface
818 > reconstructions.\cite{vlugt:cpc2007154} Since surface reconstructions
819 > blur the interface, the measurement of $G$ becomes more difficult to
820 > conduct at higher temperatures.  For this reason, most of our
821 > measurements are undertaken at $\langle T\rangle\sim$200K where
822 > reconstruction is minimized.
823  
824   However, when the surface is not completely covered by butanethiols,
825 < the simulated system is more resistent to the reconstruction
826 < above. Our Au-butanethiol/toluene system had the Au(111) surfaces 90\%
827 < covered by butanethiols, but did not see this above phenomena even at
828 < $\langle T\rangle\sim$300K. The empty three-fold sites not occupied by
829 < capping agents could help prevent surface reconstruction in that they
830 < provide other means of capping agent relaxation. It is observed that
831 < butanethiols can migrate to their neighbor empty sites during a
832 < simulation. Therefore, we were able to obtain $G$'s for these
677 < interfaces even at a relatively high temperature without being
678 < affected by surface reconstructions.
825 > the simulated system appears to be more resistent to the
826 > reconstruction. O ur Au / butanethiol / toluene system had the Au(111)
827 > surfaces 90\% covered by butanethiols, but did not see this above
828 > phenomena even at $\langle T\rangle\sim$300K.  That said, we did
829 > observe butanethiols migrating to neighboring three-fold sites during
830 > a simulation.  Since the interface persisted in these simulations,
831 > were able to obtain $G$'s for these interfaces even at a relatively
832 > high temperature without being affected by surface reconstructions.
833  
834 < \subsection{Influence of Capping Agent Coverage on $G$}
681 < To investigate the influence of butanethiol coverage on interfacial
682 < thermal conductance, a series of different coverage Au-butanethiol
683 < surfaces is prepared and solvated with various organic
684 < molecules. These systems are then equilibrated and their interfacial
685 < thermal conductivity are measured with our NIVS algorithm. Figure
686 < \ref{coverage} demonstrates the trend of conductance change with
687 < respect to different coverages of butanethiol. To study the isotope
688 < effect in interfacial thermal conductance, deuterated UA-hexane is
689 < included as well.
834 > \section{Discussion}
835  
836 < \begin{figure}
837 < \includegraphics[width=\linewidth]{coverage}
838 < \caption{Comparison of interfacial thermal conductivity ($G$) values
839 <  for the Au-butanethiol/solvent interface with various UA models and
840 <  different capping agent coverages at $\langle T\rangle\sim$200K
841 <  using certain energy flux respectively.}
697 < \label{coverage}
698 < \end{figure}
836 > The primary result of this work is that the capping agent acts as an
837 > efficient thermal coupler between solid and solvent phases.  One of
838 > the ways the capping agent can carry out this role is to down-shift
839 > between the phonon vibrations in the solid (which carry the heat from
840 > the gold) and the molecular vibrations in the liquid (which carry some
841 > of the heat in the solvent).
842  
843 < It turned out that with partial covered butanethiol on the Au(111)
844 < surface, the derivative definition for $G^\prime$
845 < (Eq. \ref{derivativeG}) was difficult to apply, due to the difficulty
846 < in locating the maximum of change of $\lambda$. Instead, the discrete
847 < definition (Eq. \ref{discreteG}) is easier to apply, as the Gibbs
848 < deviding surface can still be well-defined. Therefore, $G$ (not
849 < $G^\prime$) was used for this section.
843 > To investigate the mechanism of interfacial thermal conductance, the
844 > vibrational power spectrum was computed. Power spectra were taken for
845 > individual components in different simulations. To obtain these
846 > spectra, simulations were run after equilibration in the
847 > microcanonical (NVE) ensemble and without a thermal
848 > gradient. Snapshots of configurations were collected at a frequency
849 > that is higher than that of the fastest vibrations occuring in the
850 > simulations. With these configurations, the velocity auto-correlation
851 > functions can be computed:
852 > \begin{equation}
853 > C_A (t) = \langle\vec{v}_A (t)\cdot\vec{v}_A (0)\rangle
854 > \label{vCorr}
855 > \end{equation}
856 > The power spectrum is constructed via a Fourier transform of the
857 > symmetrized velocity autocorrelation function,
858 > \begin{equation}
859 >  \hat{f}(\omega) =
860 >  \int_{-\infty}^{\infty} C_A (t) e^{-2\pi it\omega}\,dt
861 > \label{fourier}
862 > \end{equation}
863  
864 < From Figure \ref{coverage}, one can see the significance of the
865 < presence of capping agents. Even when a fraction of the Au(111)
866 < surface sites are covered with butanethiols, the conductivity would
867 < see an enhancement by at least a factor of 3. This indicates the
868 < important role cappping agent is playing for thermal transport
869 < phenomena on metal / organic solvent surfaces.
864 > \subsection{The role of specific vibrations}
865 > The vibrational spectra for gold slabs in different environments are
866 > shown as in Figure \ref{specAu}. Regardless of the presence of
867 > solvent, the gold surfaces which are covered by butanethiol molecules
868 > exhibit an additional peak observed at a frequency of
869 > $\sim$165cm$^{-1}$.  We attribute this peak to the S-Au bonding
870 > vibration. This vibration enables efficient thermal coupling of the
871 > surface Au layer to the capping agents. Therefore, in our simulations,
872 > the Au / S interfaces do not appear to be the primary barrier to
873 > thermal transport when compared with the butanethiol / solvent
874 > interfaces.
875  
715 Interestingly, as one could observe from our results, the maximum
716 conductance enhancement (largest $G$) happens while the surfaces are
717 about 75\% covered with butanethiols. This again indicates that
718 solvent-capping agent contact has an important role of the thermal
719 transport process. Slightly lower butanethiol coverage allows small
720 gaps between butanethiols to form. And these gaps could be filled with
721 solvent molecules, which acts like ``heat conductors'' on the
722 surface. The higher degree of interaction between these solvent
723 molecules and capping agents increases the enhancement effect and thus
724 produces a higher $G$ than densely packed butanethiol arrays. However,
725 once this maximum conductance enhancement is reached, $G$ decreases
726 when butanethiol coverage continues to decrease. Each capping agent
727 molecule reaches its maximum capacity for thermal
728 conductance. Therefore, even higher solvent-capping agent contact
729 would not offset this effect. Eventually, when butanethiol coverage
730 continues to decrease, solvent-capping agent contact actually
731 decreases with the disappearing of butanethiol molecules. In this
732 case, $G$ decrease could not be offset but instead accelerated. [MAY NEED
733 SNAPSHOT SHOWING THE PHENOMENA / SLAB DENSITY ANALYSIS]
734
735 A comparison of the results obtained from differenet organic solvents
736 can also provide useful information of the interfacial thermal
737 transport process. The deuterated hexane (UA) results do not appear to
738 be much different from those of normal hexane (UA), given that
739 butanethiol (UA) is non-deuterated for both solvents. These UA model
740 studies, even though eliminating C-H vibration samplings, still have
741 C-C vibrational frequencies different from each other. However, these
742 differences in the infrared range do not seem to produce an observable
743 difference for the results of $G$ (Figure \ref{uahxnua}).
744
876   \begin{figure}
877 < \includegraphics[width=\linewidth]{uahxnua}
878 < \caption{Vibrational spectra obtained for normal (upper) and
879 <  deuterated (lower) hexane in Au-butanethiol/hexane
880 <  systems. Butanethiol spectra are shown as reference. Both hexane and
881 <  butanethiol were using United-Atom models.}
882 < \label{uahxnua}
877 > \includegraphics[width=\linewidth]{vibration}
878 > \caption{Vibrational power spectra for gold in different solvent
879 >  environments.  The presence of the butanethiol capping molecules
880 >  adds a vibrational peak at $\sim$165cm$^{-1}$. The butanethiol
881 >  spectra exhibit a corresponding peak.}
882 > \label{specAu}
883   \end{figure}
884  
885 < Furthermore, results for rigid body toluene solvent, as well as other
886 < UA-hexane solvents, are reasonable within the general experimental
887 < ranges\cite{Wilson:2002uq,cahill:793,PhysRevB.80.195406}. This
757 < suggests that explicit hydrogen might not be a required factor for
758 < modeling thermal transport phenomena of systems such as
759 < Au-thiol/organic solvent.
885 > Also in this figure, we show the vibrational power spectrum for the
886 > bound butanethiol molecules, which also exhibits the same
887 > $\sim$165cm$^{-1}$ peak.
888  
889 < However, results for Au-butanethiol/toluene do not show an identical
890 < trend with those for Au-butanethiol/hexane in that $G$ remains at
891 < approximately the same magnitue when butanethiol coverage differs from
892 < 25\% to 75\%. This might be rooted in the molecule shape difference
893 < for planar toluene and chain-like {\it n}-hexane. Due to this
894 < difference, toluene molecules have more difficulty in occupying
895 < relatively small gaps among capping agents when their coverage is not
896 < too low. Therefore, the solvent-capping agent contact may keep
897 < increasing until the capping agent coverage reaches a relatively low
898 < level. This becomes an offset for decreasing butanethiol molecules on
899 < its effect to the process of interfacial thermal transport. Thus, one
772 < can see a plateau of $G$ vs. butanethiol coverage in our results.
889 > \subsection{Overlap of power spectra}
890 > A comparison of the results obtained from the two different organic
891 > solvents can also provide useful information of the interfacial
892 > thermal transport process.  In particular, the vibrational overlap
893 > between the butanethiol and the organic solvents suggests a highly
894 > efficient thermal exchange between these components.  Very high
895 > thermal conductivity was observed when AA models were used and C-H
896 > vibrations were treated classically.  The presence of extra degrees of
897 > freedom in the AA force field yields higher heat exchange rates
898 > between the two phases and results in a much higher conductivity than
899 > in the UA force field.
900  
901 < \subsection{Influence of Chosen Molecule Model on $G$}
902 < In addition to UA solvent/capping agent models, AA models are included
903 < in our simulations as well. Besides simulations of the same (UA or AA)
904 < model for solvent and capping agent, different models can be applied
905 < to different components. Furthermore, regardless of models chosen,
779 < either the solvent or the capping agent can be deuterated, similar to
780 < the previous section. Table \ref{modelTest} summarizes the results of
781 < these studies.
901 > The similarity in the vibrational modes available to solvent and
902 > capping agent can be reduced by deuterating one of the two components
903 > (Fig. \ref{aahxntln}).  Once either the hexanes or the butanethiols
904 > are deuterated, one can observe a significantly lower $G$ and
905 > $G^\prime$ values (Table \ref{modelTest}).
906  
783 \begin{table*}
784  \begin{minipage}{\linewidth}
785    \begin{center}
786      
787      \caption{Computed interfacial thermal conductivity ($G$ and
788        $G^\prime$) values for interfaces using various models for
789        solvent and capping agent (or without capping agent) at
790        $\langle T\rangle\sim$200K. (D stands for deuterated solvent
791        or capping agent molecules; ``Avg.'' denotes results that are
792        averages of simulations under different $J_z$'s. Error
793        estimates indicated in parenthesis.)}
794      
795      \begin{tabular}{llccc}
796        \hline\hline
797        Butanethiol model & Solvent & $J_z$ & $G$ & $G^\prime$ \\
798        (or bare surface) & model & (GW/m$^2$) &
799        \multicolumn{2}{c}{(MW/m$^2$/K)} \\
800        \hline
801        UA    & UA hexane    & Avg. & 131(9)    & 87(10)    \\
802              & UA hexane(D) & 1.95 & 153(5)    & 136(13)   \\
803              & AA hexane    & Avg. & 131(6)    & 122(10)   \\
804              & UA toluene   & 1.96 & 187(16)   & 151(11)   \\
805              & AA toluene   & 1.89 & 200(36)   & 149(53)   \\
806        \hline
807        AA    & UA hexane    & 1.94 & 116(9)    & 129(8)    \\
808              & AA hexane    & Avg. & 442(14)   & 356(31)   \\
809              & AA hexane(D) & 1.93 & 222(12)   & 234(54)   \\
810              & UA toluene   & 1.98 & 125(25)   & 97(60)    \\
811              & AA toluene   & 3.79 & 487(56)   & 290(42)   \\
812        \hline
813        AA(D) & UA hexane    & 1.94 & 158(25)   & 172(4)    \\
814              & AA hexane    & 1.92 & 243(29)   & 191(11)   \\
815              & AA toluene   & 1.93 & 364(36)   & 322(67)   \\
816        \hline
817        bare  & UA hexane    & Avg. & 46.5(3.2) & 49.4(4.5) \\
818              & UA hexane(D) & 0.98 & 43.9(4.6) & 43.0(2.0) \\
819              & AA hexane    & 0.96 & 31.0(1.4) & 29.4(1.3) \\
820              & UA toluene   & 1.99 & 70.1(1.3) & 65.8(0.5) \\
821        \hline\hline
822      \end{tabular}
823      \label{modelTest}
824    \end{center}
825  \end{minipage}
826 \end{table*}
827
828 To facilitate direct comparison, the same system with differnt models
829 for different components uses the same length scale for their
830 simulation cells. Without the presence of capping agent, using
831 different models for hexane yields similar results for both $G$ and
832 $G^\prime$, and these two definitions agree with eath other very
833 well. This indicates very weak interaction between the metal and the
834 solvent, and is a typical case for acoustic impedance mismatch between
835 these two phases.
836
837 As for Au(111) surfaces completely covered by butanethiols, the choice
838 of models for capping agent and solvent could impact the measurement
839 of $G$ and $G^\prime$ quite significantly. For Au-butanethiol/hexane
840 interfaces, using AA model for both butanethiol and hexane yields
841 substantially higher conductivity values than using UA model for at
842 least one component of the solvent and capping agent, which exceeds
843 the general range of experimental measurement results. This is
844 probably due to the classically treated C-H vibrations in the AA
845 model, which should not be appreciably populated at normal
846 temperatures. In comparison, once either the hexanes or the
847 butanethiols are deuterated, one can see a significantly lower $G$ and
848 $G^\prime$. In either of these cases, the C-H(D) vibrational overlap
849 between the solvent and the capping agent is removed (Figure
850 \ref{aahxntln}). Conclusively, the improperly treated C-H vibration in
851 the AA model produced over-predicted results accordingly. Compared to
852 the AA model, the UA model yields more reasonable results with higher
853 computational efficiency.
854
907   \begin{figure}
908   \includegraphics[width=\linewidth]{aahxntln}
909 < \caption{Spectra obtained for All-Atom model Au-butanethil/solvent
909 > \caption{Spectra obtained for all-atom (AA) Au / butanethiol / solvent
910    systems. When butanethiol is deuterated (lower left), its
911 <  vibrational overlap with hexane would decrease significantly,
912 <  compared with normal butanethiol (upper left). However, this
913 <  dramatic change does not apply to toluene as much (right).}
911 >  vibrational overlap with hexane decreases significantly.  Since
912 >  aromatic molecules and the butanethiol are vibrationally dissimilar,
913 >  the change is not as dramatic when toluene is the solvent (right).}
914   \label{aahxntln}
915   \end{figure}
916  
917 < However, for Au-butanethiol/toluene interfaces, having the AA
917 > For the Au / butanethiol / toluene interfaces, having the AA
918   butanethiol deuterated did not yield a significant change in the
919 < measurement results. Compared to the C-H vibrational overlap between
920 < hexane and butanethiol, both of which have alkyl chains, that overlap
921 < between toluene and butanethiol is not so significant and thus does
922 < not have as much contribution to the heat exchange
871 < process. Conversely, extra degrees of freedom such as the C-H
872 < vibrations could yield higher heat exchange rate between these two
873 < phases and result in a much higher conductivity.
919 > measured conductance. Compared to the C-H vibrational overlap between
920 > hexane and butanethiol, both of which have alkyl chains, the overlap
921 > between toluene and butanethiol is not as significant and thus does
922 > not contribute as much to the heat exchange process.
923  
924 < Although the QSC model for Au is known to predict an overly low value
925 < for bulk metal gold conductivity\cite{kuang:164101}, our computational
926 < results for $G$ and $G^\prime$ do not seem to be affected by this
927 < drawback of the model for metal. Instead, our results suggest that the
928 < modeling of interfacial thermal transport behavior relies mainly on
929 < the accuracy of the interaction descriptions between components
930 < occupying the interfaces.
924 > Previous observations of Zhang {\it et al.}\cite{hase:2010} indicate
925 > that the {\it intra}molecular heat transport due to alkylthiols is
926 > highly efficient.  Combining our observations with those of Zhang {\it
927 >  et al.}, it appears that butanethiol acts as a channel to expedite
928 > heat flow from the gold surface and into the alkyl chain.  The
929 > acoustic impedance mismatch between the metal and the liquid phase can
930 > therefore be effectively reduced with the presence of suitable capping
931 > agents.
932  
933 < \subsection{Role of Capping Agent in Interfacial Thermal Conductance}
934 < The vibrational spectra for gold slabs in different environments are
935 < shown as in Figure \ref{specAu}. Regardless of the presence of
936 < solvent, the gold surfaces covered by butanethiol molecules, compared
937 < to bare gold surfaces, exhibit an additional peak observed at the
938 < frequency of $\sim$170cm$^{-1}$, which is attributed to the S-Au
939 < bonding vibration. This vibration enables efficient thermal transport
940 < from surface Au layer to the capping agents. Therefore, in our
891 < simulations, the Au/S interfaces do not appear major heat barriers
892 < compared to the butanethiol / solvent interfaces.
933 > Deuterated models in the UA force field did not decouple the thermal
934 > transport as well as in the AA force field.  The UA models, even
935 > though they have eliminated the high frequency C-H vibrational
936 > overlap, still have significant overlap in the lower-frequency
937 > portions of the infrared spectra (Figure \ref{uahxnua}).  Deuterating
938 > the UA models did not decouple the low frequency region enough to
939 > produce an observable difference for the results of $G$ (Table
940 > \ref{modelTest}).
941  
894 Simultaneously, the vibrational overlap between butanethiol and
895 organic solvents suggests higher thermal exchange efficiency between
896 these two components. Even exessively high heat transport was observed
897 when All-Atom models were used and C-H vibrations were treated
898 classically. Compared to metal and organic liquid phase, the heat
899 transfer efficiency between butanethiol and organic solvents is closer
900 to that within bulk liquid phase.
901
902 Furthermore, our observation validated previous
903 results\cite{hase:2010} that the intramolecular heat transport of
904 alkylthiols is highly effecient. As a combinational effects of these
905 phenomena, butanethiol acts as a channel to expedite thermal transport
906 process. The acoustic impedance mismatch between the metal and the
907 liquid phase can be effectively reduced with the presence of suitable
908 capping agents.
909
942   \begin{figure}
943 < \includegraphics[width=\linewidth]{vibration}
944 < \caption{Vibrational spectra obtained for gold in different
945 <  environments.}
946 < \label{specAu}
943 > \includegraphics[width=\linewidth]{uahxnua}
944 > \caption{Vibrational spectra obtained for normal (upper) and
945 >  deuterated (lower) hexane in Au-butanethiol/hexane
946 >  systems. Butanethiol spectra are shown as reference. Both hexane and
947 >  butanethiol were using United-Atom models.}
948 > \label{uahxnua}
949   \end{figure}
950  
917 [MAY ADD COMPARISON OF AU SLAB WIDTHS BUT NOT MUCH TO TALK ABOUT...]
918
951   \section{Conclusions}
952 < The NIVS algorithm we developed has been applied to simulations of
953 < Au-butanethiol surfaces with organic solvents. This algorithm allows
954 < effective unphysical thermal flux transferred between the metal and
955 < the liquid phase. With the flux applied, we were able to measure the
956 < corresponding thermal gradient and to obtain interfacial thermal
957 < conductivities. Under steady states, single trajectory simulation
958 < would be enough for accurate measurement. This would be advantageous
959 < compared to transient state simulations, which need multiple
928 < trajectories to produce reliable average results.
952 > The NIVS algorithm has been applied to simulations of
953 > butanethiol-capped Au(111) surfaces in the presence of organic
954 > solvents. This algorithm allows the application of unphysical thermal
955 > flux to transfer heat between the metal and the liquid phase. With the
956 > flux applied, we were able to measure the corresponding thermal
957 > gradients and to obtain interfacial thermal conductivities. Under
958 > steady states, 2-3 ns trajectory simulations are sufficient for
959 > computation of this quantity.
960  
961 < Our simulations have seen significant conductance enhancement with the
962 < presence of capping agent, compared to the bare gold / liquid
961 > Our simulations have seen significant conductance enhancement in the
962 > presence of capping agent, compared with the bare gold / liquid
963   interfaces. The acoustic impedance mismatch between the metal and the
964 < liquid phase is effectively eliminated by proper capping
964 > liquid phase is effectively eliminated by a chemically-bonded capping
965   agent. Furthermore, the coverage precentage of the capping agent plays
966   an important role in the interfacial thermal transport
967 < process. Moderately lower coverages allow higher contact between
968 < capping agent and solvent, and thus could further enhance the heat
969 < transfer process.
967 > process. Moderately low coverages allow higher contact between capping
968 > agent and solvent, and thus could further enhance the heat transfer
969 > process, giving a non-monotonic behavior of conductance with
970 > increasing coverage.
971  
972 < Our measurement results, particularly of the UA models, agree with
973 < available experimental data. This indicates that our force field
942 < parameters have a nice description of the interactions between the
943 < particles at the interfaces. AA models tend to overestimate the
972 > Our results, particularly using the UA models, agree well with
973 > available experimental data.  The AA models tend to overestimate the
974   interfacial thermal conductance in that the classically treated C-H
975 < vibration would be overly sampled. Compared to the AA models, the UA
976 < models have higher computational efficiency with satisfactory
977 < accuracy, and thus are preferable in interfacial thermal transport
978 < modelings. Of the two definitions for $G$, the discrete form
975 > vibrations become too easily populated. Compared to the AA models, the
976 > UA models have higher computational efficiency with satisfactory
977 > accuracy, and thus are preferable in modeling interfacial thermal
978 > transport.
979 >
980 > Of the two definitions for $G$, the discrete form
981   (Eq. \ref{discreteG}) was easier to use and gives out relatively
982   consistent results, while the derivative form (Eq. \ref{derivativeG})
983   is not as versatile. Although $G^\prime$ gives out comparable results
984   and follows similar trend with $G$ when measuring close to fully
985 < covered or bare surfaces, the spatial resolution of $T$ profile is
986 < limited for accurate computation of derivatives data.
985 > covered or bare surfaces, the spatial resolution of $T$ profile
986 > required for the use of a derivative form is limited by the number of
987 > bins and the sampling required to obtain thermal gradient information.
988  
989 < Vlugt {\it et al.} has investigated the surface thiol structures for
990 < nanocrystal gold and pointed out that they differs from those of the
991 < Au(111) surface\cite{landman:1998,vlugt:cpc2007154}. This difference
992 < might lead to change of interfacial thermal transport behavior as
993 < well. To investigate this problem, an effective means to introduce
994 < thermal flux and measure the corresponding thermal gradient is
995 < desirable for simulating structures with spherical symmetry.
989 > Vlugt {\it et al.} have investigated the surface thiol structures for
990 > nanocrystalline gold and pointed out that they differ from those of
991 > the Au(111) surface.\cite{landman:1998,vlugt:cpc2007154} This
992 > difference could also cause differences in the interfacial thermal
993 > transport behavior. To investigate this problem, one would need an
994 > effective method for applying thermal gradients in non-planar
995 > (i.e. spherical) geometries.
996  
997   \section{Acknowledgments}
998   Support for this project was provided by the National Science
999   Foundation under grant CHE-0848243. Computational time was provided by
1000   the Center for Research Computing (CRC) at the University of Notre
1001 < Dame. \newpage
1001 > Dame.
1002 > \newpage
1003  
1004   \bibliography{interfacial}
1005  

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