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Revision 4052 by gezelter, Wed Feb 26 13:13:45 2014 UTC

# Line 493 | Line 493 | field-induced nematic ordering of the 4-cyano-4'-penty
493  
494   Our simulations show that the united-atom model can reproduce the
495   field-induced nematic ordering of the 4-cyano-4'-pentylbiphenyl.
496 < Because we are simulating a very small electrode separation (5nm), a
497 < voltage drop as low as 1.2 V was sufficient to induce the phase
498 < change. This potential is significantly lower than the 500V that is
499 < known to cause dielectric breakdown in 5CB.\cite{XXX}
496 > Because we are simulating a very small electrode separation (5~nm), a
497 > voltage drop as low as 1.2~V was sufficient to induce the phase
498 > change. This potential is significantly smaller than the 500~V that is
499 > known to cause dielectric breakdown in 5CB,\cite{XXX} and suggests
500 > that by using close electrode separation, it would be relatively
501 > straightforward to observe the nitrile Stark shift in 5CB.
502  
503   Both the classical correlation function and the isolated cluster
504 < approaches to estimating the field-induced changes to the IR spectrum
505 < show an increase in the population of nitrile stretches that appear at
506 < a shift of $\sim 40 \mathrm{cm}^{-1}$ to the red of the unperturbed
507 < vibrational line.  To understand the origin of this shift, a more
508 < complete picture of the spatial ordering around the nitrile bonds is
509 < required.  The angle-dependent pair distribution functions,
504 > approaches to estimating the IR spectrum show that a small population
505 > of nitrile stretches shift by $\sim 40 \mathrm{cm}^{-1}$ to the red of
506 > the unperturbed vibrational line.  To understand the origin of this
507 > shift, a more complete picture of the spatial ordering around the
508 > nitrile bonds is required.  We have computed the angle-dependent pair
509 > distribution functions,
510   \begin{align}
511   g(r, \cos \omega) = &  \frac{1}{\rho N} \left< \sum_{i}
512   \sum_{j} \delta \left(r - r_{ij}\right) \delta\left(\cos \omega_{ij} -
# Line 513 | Line 515 | g(r, \cos \theta) = & \frac{1}{\rho N} \left< \sum_{i}
515   \sum_{j} \delta \left(r - r_{ij}\right) \delta\left(\cos \theta_{i} -
516    \cos \theta \right) \right>
517   \end{align}
518 < provide information about the joint spatial and angular correlations
519 < in the system. The angles $\omega$ and $\theta$ are defined by vectors
520 < along the CN axis of each nitrile bond (see figure
521 < \ref{fig:definition}).
520 <
518 > which provide information about the joint spatial and angular
519 > correlations present in the system. The angles $\omega$ and $\theta$
520 > are defined by vectors along the CN axis of each nitrile bond (see
521 > figure \ref{fig:definition}).
522   \begin{figure}
523 <  \includegraphics[width=\linewidth]{definition}
523 >  \includegraphics[width=4in]{definition}
524    \caption{Definitions of the angles between two nitrile bonds.}
525    \label{fig:definition}
526   \end{figure}
527  
528 < In figure \ref{fig:gofromega}, one of the structural effects of the
529 < field-induced phase transition is clear. The nematic ordering
530 < transfers population from the perpendicular or unaligned region ($\cos
531 < \omega \approx 0$) to the nitrile-alinged peak near $\cos\omega = 1$,
532 < leaving most other features are undisturbed.  This change is visible
533 < in the simulations as an increased population of aligned nitrile bonds
534 < in the first solvation shell.  
528 > The primary structural effect of the field-induced phase transition is
529 > apparent in figure \ref{fig:gofromega}. The nematic ordering transfers
530 > population from the perpendicular ($\cos\omega\approx 0$) and
531 > anti-aligned ($\cos\omega\approx -1$) to the nitrile-alinged peak
532 > near $\cos\omega\approx 1$, leaving most other features undisturbed.  This
533 > change is visible in the simulations as an increased population of
534 > aligned nitrile bonds in the first solvation shell.
535   \begin{figure}
536    \includegraphics[width=\linewidth]{Figure4}
537    \caption{Contours of the angle-dependent pair distribution functions
538 <    for nitrile bonds on 5CB in the zero-field (upper panel) and full
538 >    for nitrile bonds on 5CB in the no field (upper panel) and full
539      field (lower panel) simulations. Dark areas signify regions of
540      enhanced density, while light areas signify depletion relative to
541      the bulk density.}
542    \label{fig:gofromega}
543   \end{figure}
544 < Although it is possible that the coupling between closely-spaced
545 < nitrile pairs is responsible for some of the red-shift, that is not
546 < the only structural change that is taking place.  The other two
547 < dimensional pair distribution function, $g(r,\cos\theta)$, shows that
548 < nematic ordering also transfers population that is directly in line
549 < with the nitrile bond (see figure \ref{fig:gofrtheta}) to the sides of
550 < the molecule, thereby freeing steric blockage that is more directly
551 < influencing the nitrile vibration.
544 > Although it is certainly possible that the coupling between
545 > closely-spaced nitrile pairs is responsible for some of the red-shift,
546 > that is not the only structural change that is taking place.  The
547 > second two-dimensional pair distribution function, $g(r,\cos\theta)$,
548 > shows that nematic ordering also transfers population that is directly
549 > in line with the nitrile bond (see figure \ref{fig:gofrtheta}) to the
550 > sides of the molecule, thereby freeing steric blockage can directly
551 > influence the nitrile vibration.  We are suggesting here that the
552 > nematic ordering provides an anti-caging of the nitrile vibration, and
553 > given that the oscillator is fairly anharmonic, this provides a
554 > fraction of the nitrile bonds with a significant red-shift.
555   \begin{figure}
556    \includegraphics[width=\linewidth]{Figure6}
557    \caption{Contours of the angle-dependent pair distribution function,
558 <    $g(r,\cos \theta)$, for finding any atom at a distance and angular
559 <    deviation from the centrile of a nitrile bond.  The top of each
560 <    contour plot corresponds to local density along the direction of
561 <    the nitrogen in the CN bond, while the bottom is in the direction
562 <    of the carbon atom.  $g(z)$ data taken by following the
563 <    \ce{C -> N} vector for each nitrile bond (bottom panel) shows
564 <    that the field-induced phase transition reduces the population
565 <    atoms that are directly in line with the vibrational motion.}
558 >    $g(r,\cos \theta)$, for finding any other atom at a distance and
559 >    angular deviation from the center of a nitrile bond.  The top edge
560 >    of each contour plot corresponds to local density along the
561 >    direction of the nitrogen in the CN bond, while the bottom is in
562 >    the direction of the carbon atom.  Bottom panel: $g(z)$ data taken
563 >    by following the \ce{C -> N} vector for each nitrile bond shows
564 >    that the field-induced phase transition reduces the population of
565 >    atoms that are directly in line with the nitrogen motion.}
566    \label{fig:gofrtheta}
567   \end{figure}
568  
569 + The cause of this shift does not appear to be related to the alignment
570 + of those nitrile bonds with the field, but rather to the change in
571 + local environment that is brought about by the isotropic-nematic
572 + transition.  We have compared configurations for many of the cluster
573 + calculations that exhibited the frequencies between (2190 and 2215
574 + $\mathrm{cm}^{-1}$) , and have observed some similar features.  The
575 + lowest frequencies appear to come from configurations which have
576 + nearly-empty pockets directly opposite the nitrogen atom from the
577 + nitrile carbon.  Because we have so few clusters, this is certainly not
578 + quantitative confirmation of this effect.
579  
580  
567
568 The cause of this shift does not appear to be
569 related to the alignment of those nitrile bonds with the field, but
570 rather to the change in local environment that is brought about by the
571 isotropic-nematic transition.
572
573
581   While this makes the application of nitrile Stark effects in
582   simulations without water harder, these data show
583   that it is not a deal breaker. The classically calculated nitrile

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