the final copy went out this morning. YAYYYYYYYYY!!!!!!!!!!!!!!!
made some final revisions, and started to add some figures
added a bunch of igures
text is finished YAY!!!
finished the revisions of the first draft now only lacks a complete results section, and a future Directions section
revisions to the first draft halfway complete. completed the introduction.
added command line arguments, and a time smoother
fixed a little seen output bug. (Tarega is not always default)
fixed a cosCorr and GofR flag bug, as well as the GofR scaling bug.
running into some problemsd with the figures.
made some changes to the Makefile, and added the sections I think I should write
did a little more typing
additions to the lipid model
got the water SSD model section "done"
added the ssd figure
added some equations and other misc stuff. needs lots of work.
just writing, not much editing yet
This commit was generated by cvs2svn to compensate for changes in r93, which included commits to RCS files with non-trunk default branches.
*** empty log message ***
*** empty log message ***
*** empty log message ***
*** empty log message ***
*** empty log message ***
VS: ---------------------------------------------------------------------- added more figures, and fixed the slides. GFave a practice talk 6-16-02 with this.
*** empty log message ***
fixed somebugs with start frame
added a utility to output what time of each frame
*** empty log message ***
added the capability to specify a start and end frame for cosCorr and GofR
*** empty log message ***
spell checked
I think I have most of it the way I like it, just need to change the correlation functions, and the final pictures
fixed some figures almost done with slides
*** empty log message ***
added figures fixed more of the graphs
*** empty log message ***
*** empty log message ***
*** empty log message ***
*** empty log message ***
*** empty log message ***
*** empty log message ***
changed some of the figures, and put some more polish on the intro
*** empty log message ***
*** empty log message ***
flexible atom selection
made a new figure. trying to add it to the slide
fixed the citations. continueing to clean up the slides.
switched in Chuck's magic slide enviroment
added a crapload of crap that may or may norbe neccassary. Time will tell. Also, got footnote references working.
This commit was generated by cvs2svn to compensate for changes in r60, which included commits to RCS files with non-trunk default branches.
This commit was generated by cvs2svn to compensate for changes in r58, which included commits to RCS files with non-trunk default branches.
This commit was generated by cvs2svn to compensate for changes in r56, which included commits to RCS files with non-trunk default branches.
fixed the Makefile
added all of the pictures. And gave a practice talk based on this version. Now begins the process of cleanup and additions of citations.
getting there. Most everything but the motivation slide has been filled out. Lacks only pictures and Diagrams.
Skeletons of most every slide
made some changes
This commit was generated by cvs2svn to compensate for changes in r49, which included commits to RCS files with non-trunk default branches.
This commit was generated by cvs2svn to compensate for changes in r47, which included commits to RCS files with non-trunk default branches.
added the cos correlation function
got the GofR code working, and slimmed down the memory usage.
finished working on the command line options, and started working on the GofR added the GofR header, and moved the strructure definitions to the madProps.h
finished working on the command line options, and started working on the GofR
made a header directory, and fixed the Makefile to work with it the new header dir
made a header directory, and fixed the Makefile to work with it
took out a reference file
This commit was generated by cvs2svn to compensate for changes in r38, which included commits to RCS files with non-trunk default branches.
fixed the ordering on the end of file test
moved the actual routine into a seperate source from the main. This allows the routine to be used in other applications.
This commit was generated by cvs2svn to compensate for changes in r34, which included commits to RCS files with non-trunk default branches.
cleaned up the output a little
fixed makeRandom to set up a correct simulation
fixed a bug in getA( double the_A[3][3] );
added the getA( double the_A[3][3] ) routine to the Directional Atom Class, to facilitate easier RotMat aquisition
adding the routines to the proogram `
adding a program to make a lipid configuration with random dispersion of lipids.
fixed some bugs in the Makefile
removed xLate.cpp which was part of a seperate project
fixed a precision error in the calculation of the temperature. Also fixed the order that dump file are written.
removed a misc file
This commit was generated by cvs2svn to compensate for changes in r22, which included commits to RCS files with non-trunk default branches.
This commit was generated by cvs2svn to compensate for changes in r20, which included commits to RCS files with non-trunk default branches.
This commit was generated by cvs2svn to compensate for changes in r18, which included commits to RCS files with non-trunk default branches.
This commit was generated by cvs2svn to compensate for changes in r16, which included commits to RCS files with non-trunk default branches.
This commit was generated by cvs2svn to compensate for changes in r14, which included commits to RCS files with non-trunk default branches.
This commit was generated by cvs2svn to compensate for changes in r12, which included commits to RCS files with non-trunk default branches.
This commit was generated by cvs2svn to compensate for changes in r10, which included commits to RCS files with non-trunk default branches.
nose hoover chains added
*** empty log message ***
*** empty log message ***
*** empty log message ***
*** empty log message ***
Import Root
initial checkin
initial checkin
Standard project directories initialized by cvs2svn.