made some final revisions, and started to add some figures

text is finished YAY!!!

revisions to the first draft halfway complete.

completed the introduction.

fixed a little seen output bug. (Tarega is not always default)

running into some problemsd with the figures.

did a little more typing

got the water SSD model section "done"

added some equations and other misc stuff. needs lots of work.

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VS: ----------------------------------------------------------------------
added more figures, and fixed the slides. GFave a practice talk 6-16-02 with this.

fixed somebugs with start frame

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I think I have most of it the way I like it, just need to change the correlation functions, and the final pictures

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changed some of the figures, and put some more polish on the intro

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made a new figure. trying to add it to the slide

switched in Chuck's magic slide enviroment

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added all of the pictures. And gave a practice talk based on this version. Now begins the process of cleanup and additions
of citations.

Skeletons of most every slide

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added the cos correlation function

finished working on the command line options, and started working on the GofR

added the GofR header, and moved the strructure definitions to the madProps.h

made a header directory, and fixed the Makefile to work with it

the new header dir

took out a reference file

fixed the ordering on the end of file test

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fixed makeRandom to set up a correct simulation

added the getA( double the_A[3][3] ) routine to the Directional Atom Class, to facilitate easier RotMat aquisition

adding a program to make a lipid configuration with random dispersion of lipids.

removed xLate.cpp which was part of a seperate project

removed a misc file

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nose hoover chains added

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initial checkin

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