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Comparing trunk/COonPt/firstTry.tex (file contents):
Revision 3873 by jmichalk, Tue Mar 12 21:33:15 2013 UTC vs.
Revision 3875 by gezelter, Wed Mar 13 19:18:03 2013 UTC

# Line 1 | Line 1
1 < \documentclass[11pt]{article}
1 > \documentclass[journal = jpccck, manuscript = article]{achemso}
2 > \setkeys{acs}{usetitle = true}
3 > \usepackage{achemso}
4 > \usepackage{caption}
5 > \usepackage{float}
6 > \usepackage{geometry}
7 > \usepackage{natbib}
8 > \usepackage{setspace}
9 > \usepackage{xkeyval}
10 > %%%%%%%%%%%%%%%%%%%%%%%
11   \usepackage{amsmath}
12   \usepackage{amssymb}
13   \usepackage{times}
# Line 6 | Line 15
15   \usepackage{setspace}
16   \usepackage{endfloat}
17   \usepackage{caption}
18 < %\usepackage{tabularx}
18 > \usepackage{tabularx}
19 > \usepackage{longtable}
20   \usepackage{graphicx}
21   \usepackage{multirow}
22 < %\usepackage{booktabs}
23 < %\usepackage{bibentry}
24 < %\usepackage{mathrsfs}
25 < \usepackage[square, comma, sort&compress]{natbib}
22 > \usepackage{multicol}
23 >
24 > \usepackage[version=3]{mhchem}  % this is a great package for formatting chemical reactions
25 > % \usepackage[square, comma, sort&compress]{natbib}
26   \usepackage{url}
27   \pagestyle{plain} \pagenumbering{arabic} \oddsidemargin 0.0cm
28   \evensidemargin 0.0cm \topmargin -21pt \headsep 10pt \textheight
# Line 22 | Line 32
32   %\AtBeginDelayedFloats{\renewcomand{\baselinestretch}{1.66}}
33   \setlength{\abovecaptionskip}{20 pt}
34   \setlength{\belowcaptionskip}{30 pt}
35 + % \bibpunct{}{}{,}{s}{}{;}
36  
37 < \bibpunct{}{}{,}{s}{}{;}
38 < \bibliographystyle{achemso}
37 > %\citestyle{nature}
38 > % \bibliographystyle{achemso}
39  
40 < \begin{document}
40 > \title{Molecular Dynamics simulations of the surface reconstructions
41 >  of Pt(557) and Au(557) under exposure to CO}
42  
43 + \author{Joseph R. Michalka}
44 + \author{Patrick W. McIntyre}
45 + \author{J. Daniel Gezelter}
46 + \email{gezelter@nd.edu}
47 + \affiliation[University of Notre Dame]{251 Nieuwland Science Hall\\
48 +  Department of Chemistry and Biochemistry\\ University of Notre
49 +  Dame\\ Notre Dame, Indiana 46556}
50  
51 + \keywords{}
52 +
53 + \begin{document}
54 +
55 +
56   %%
57   %Introduction
58   %       Experimental observations
# Line 46 | Line 70
70   %       Causes of 2_layer reordering in Pt
71   %Summary
72   %%
49
50 %Title
51 \title{Molecular Dynamics simulations of the surface reconstructions
52  of Pt(557) and Au(557) under exposure to CO}
53
54 \author{Joseph R. Michalka, Patrick W. McIntyre and J. Daniel
55 Gezelter\footnote{Corresponding author. \ Electronic mail: gezelter@nd.edu} \\
56 Department of Chemistry and Biochemistry,\\
57 University of Notre Dame\\
58 Notre Dame, Indiana 46556}
59
60 %Date
61 \date{Mar 5, 2013}
62
63 %authors
64
65 % make the title
66 \maketitle
73  
68 \begin{doublespace}
74  
75   \begin{abstract}
76   We examine surface reconstructions of Pt and Au(557) under
# Line 300 | Line 305 | zone.\cite{Monkhorst:1976,PhysRevB.13.5188} The relaxe
305   performed until the energy difference between subsequent steps
306   was less than $10^{-8}$ Ry.   Nonspin-polarized supercell calculations
307   were performed with a 4~x~4~x~4 Monkhorst-Pack {\bf k}-point sampling of the first Brillouin
308 < zone.\cite{Monkhorst:1976,PhysRevB.13.5188} The relaxed gold slab was
308 > zone.\cite{Monkhorst:1976} The relaxed gold slab was
309   then used in numerous single point calculations with CO at various
310   heights (and angles relative to the surface) to allow fitting of the
311   empirical force field.
# Line 346 | Line 351 | future work.
351    \multirow{2}{*}{\textbf{Pt-CO}} & \multirow{2}{*}{-1.9} & -1.4 \bibpunct{}{}{,}{n}{}{,}
352    (Ref. \protect\cite{Kelemen:1979}) \\
353   & &  -1.9 \bibpunct{}{}{,}{n}{}{,} (Ref. \protect\cite{Yeo}) \\ \hline
354 <  \textbf{Au-CO} & -0.39 & -0.40 \bibpunct{}{}{,}{n}{}{,}  (Ref. \protect\cite{TPD_Gold}) \\
354 >  \textbf{Au-CO} & -0.39 & -0.40 \bibpunct{}{}{,}{n}{}{,}  (Ref. \protect\cite{TPDGold}) \\
355    \hline
356   \end{tabular}
357   \label{tab:co_energies}
# Line 364 | Line 369 | The different bulk melting temperatures (1337~K for Au
369   1200~K were performed to confirm the relative
370   stability of the surfaces without a CO overlayer.  
371  
372 < The different bulk melting temperatures (1337~K for Au
373 < and 2045~K for Pt) suggest that any possible reconstruction should happen at
372 > The different bulk melting temperatures (1337~K for Au\cite{Au:melting}
373 > and 2045~K for Pt\cite{Pt:melting}) suggest that any possible reconstruction should happen at
374   different temperatures for the two metals.  The bare Au and Pt surfaces were
375   initially run in the canonical (NVT) ensemble at 800~K and 1000~K
376   respectively for 100 ps. The two surfaces were relatively stable at these
# Line 419 | Line 424 | repulsion exists because the entropy of the step-edges
424   original (557) lattice. Previous work by Williams et al.\cite{Williams:1991, Williams:1994}
425   highlights the repulsion that exists between step-edges even
426   when no direct interactions are present in the system. This
427 < repulsion exists because the entropy of the step-edges is constrained
427 > repulsion arises because the entropy of the step-edges is constrained,
428   since step-edge crossing is not allowed. This entropic repulsion
429   does not completely define the interactions between steps,
430   which is why some surfaces will undergo step coalescence,
431   where additional attractive interactions can overcome the
432 < repulsion\cite{Williams:1991} and others will not. The presence
433 < of adsorbates can affect these step interactions, potentially
432 > repulsion\cite{Williams:1991} and others will not. The presence and concentration
433 > of adsorbates, as shown in this work, can affect these step interactions, potentially
434   leading to a new surface structure as the thermodynamic minimum.
435  
436   \subsubsection{Double layers}
# Line 442 | Line 447 | doubling seen by Tao et al. within the time scales stu
447   effect that adsorbate coverage has on edge breakup and on the
448   surface diffusion of metal adatoms. While both systems displayed
449   step-edge wandering, only the 50\% Pt surface underwent the
450 < doubling seen by Tao et al. within the time scales studied here.
451 < Over longer periods (150~ns) two more double layers formed
450 > doubling seen by Tao et al.\cite{Tao:2010} within the time scales studied here.
451 > Over longer periods, (150~ns) two more double layers formed
452   on this interface. Although double layer formation did not occur
453   in the other Pt systems, they show more step-wandering and
454   general roughening compared to their Au counterparts. The
# Line 465 | Line 470 | $\sim$70 s/image provides an upper bound for the time
470   of ignoring the dynamics of the system. Previous experimental work by Pearl and
471   Sibener\cite{Pearl}, using STM, has been able to capture the coalescing
472   of steps on Ni(977). The time scale of the image acquisition,
473 < $\sim$70 s/image provides an upper bound for the time required for
473 > $\sim$70~s/image provides an upper bound for the time required for
474   the doubling to occur. In this section we give data on dynamic and
475   transport properties, e.g. diffusion, layer formation time, etc.
476  
# Line 642 | Line 647 | are displayed in Table \ref{tab:energies} with the cor
647   of Pt atoms was then examined to determine possible barriers. Because
648   the movement was forced along a pre-defined reaction coordinate that may differ
649   from the true minimum of this path, only the beginning and ending energies
650 < are displayed in Table \ref{tab:energies} with the corresponding beginning and ending reaction coordinates in Figure \ref{fig:lambdaTable}. These values suggest that the presence of CO at suitable
650 > are displayed in Table \ref{tab:rxcoord} with the corresponding beginning and ending reaction coordinates in Figure \ref{fig:lambdaTable}. These values suggest that the presence of CO at suitable
651   locations can lead to lowered barriers for Pt breaking apart from the step-edge.
652   Additionally, as highlighted in Figure \ref{fig:lambda}, the presence of CO makes the
653   burrowing and lifting of adatoms favorable, whereas without CO, the process is neutral
# Line 666 | Line 671 | in terms of energetics.
671   \caption{}
672   \label{fig:lambdaTable}
673   \end{figure}
674 +
675 +
676 +
677 + \begin{table}[H]
678 + \caption{}
679 + \centering
680 + \begin{tabular}{| c || c | c | c | c |}
681 + \hline
682 + \textbf{System} & 0.5~\AA & 2~\AA & 4~\AA & 6~\AA \\
683 + \hline
684 + A & 6.38 & 38.34 & 44.65 & 47.60 \\
685 + B & -20.72 & 0.67 & 17.33 & 24.28 \\
686 + C & 4.92 & 27.02 & 41.05 & 47.43 \\
687 + D & -16.97 & 21.21 & 35.87 & 40.93 \\
688 + E & 5.92 & 30.96 & 43.69 & 49.23 \\
689 + F & 8.53 & 46.23 & 53.98 & 65.55 \\
690 + \hline
691 + \end{tabular}
692 + \label{tab:rxcoord}
693 + \end{table}
694  
695  
696   \subsection{Diffusion}
# Line 741 | Line 766 | In this work we have shown the reconstruction of the P
766   % \end{tabular}
767   % \end{table}
768  
769 < \section{Acknowledgments}
769 > \begin{acknowledgement}
770   Support for this project was provided by the National Science
771   Foundation under grant CHE-0848243 and by the Center for Sustainable
772   Energy at Notre Dame (cSEND). Computational time was provided by the
773   Center for Research Computing (CRC) at the University of Notre Dame.
774 <
774 > \end{acknowledgement}
775   \newpage
776   \bibliography{firstTryBibliography}
777 < \end{doublespace}
777 > %\end{doublespace}
778 >
779 > \begin{tocentry}
780 > %\includegraphics[height=3.5cm]{timelapse}
781 > \end{tocentry}
782 >
783   \end{document}

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