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root/group/trunk/COonPt/firstTryBibliography.bib
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Ever closer, the horizon looms. Most recent as of Friday afternoon before I left for happy hour.

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# User Rev Content
1 jmichalk 3802 %% This BibTeX bibliography file was created using BibDesk.
2     %% http://bibdesk.sourceforge.net/
3    
4    
5 jmichalk 3870 %% Created for Joseph Michalka at 2013-03-08 10:09:16 -0500
6 jmichalk 3802
7    
8     %% Saved with string encoding Unicode (UTF-8)
9    
10    
11 gezelter 3808 @string{acp = {Adv. Chem. Phys.}}
12 jmichalk 3802
13 gezelter 3808 @string{bj = {Biophys. J.}}
14    
15     @string{ccp5 = {CCP5 Information Quarterly}}
16    
17     @string{cp = {Chem. Phys.}}
18    
19     @string{cpl = {Chem. Phys. Lett.}}
20    
21     @string{ea = {Electrochim. Acta}}
22    
23     @string{jacs = {J. Am. Chem. Soc.}}
24    
25     @string{jbc = {J. Biol. Chem.}}
26    
27     @string{jcat = {J. Catalysis}}
28    
29     @string{jcc = {J. Comp. Chem.}}
30    
31     @string{jcop = {J. Comp. Phys.}}
32    
33     @string{jcp = {J. Chem. Phys.}}
34    
35     @string{jctc = {J. Chem. Theory Comp.}}
36    
37     @string{jmc = {J. Med. Chem.}}
38    
39     @string{jml = {J. Mol. Liq.}}
40    
41     @string{jmm = {J. Mol. Model.}}
42    
43     @string{jpc = {J. Phys. Chem.}}
44    
45     @string{jpca = {J. Phys. Chem. A}}
46    
47     @string{jpcb = {J. Phys. Chem. B}}
48    
49     @string{jpcc = {J. Phys. Chem. C}}
50    
51     @string{jpcl = {J. Phys. Chem. Lett.}}
52    
53     @string{mp = {Mol. Phys.}}
54    
55     @string{pams = {Proc. Am. Math Soc.}}
56    
57     @string{pccp = {Phys. Chem. Chem. Phys.}}
58    
59     @string{pnas = {Proc. Natl. Acad. Sci. USA}}
60    
61     @string{pr = {Phys. Rev.}}
62    
63     @string{pra = {Phys. Rev. A}}
64    
65     @string{prb = {Phys. Rev. B}}
66    
67     @string{pre = {Phys. Rev. E}}
68    
69     @string{prl = {Phys. Rev. Lett.}}
70    
71     @string{rmp = {Rev. Mod. Phys.}}
72    
73     @string{ss = {Surf. Sci.}}
74    
75    
76 jmichalk 3870 @article{Peters:2000,
77     Author = {K.F. Peters and P. Steadman and H. Isern and J. Alvarez and S. Ferrer},
78     Date-Added = {2013-03-07 15:24:56 +0000},
79     Date-Modified = {2013-03-07 15:26:12 +0000},
80     Journal = {Surface Science},
81     Keywords = {Au CO reconstruction},
82     Month = {August},
83     Pages = {10-22},
84     Title = {Elevated-pressure chemical reactivity of carbon monoxide over Au(111)},
85     Volume = {467},
86     Year = {2000}}
87    
88     @article{Piccolo:2004,
89     Author = {L. Piccolo and D. Loffreda and F. J. Cadete Santos Aires and C. Deranlot and Y. Jugnet and P. Sautet and J. C. Bertolini},
90     Date-Added = {2013-03-06 21:18:06 +0000},
91     Date-Modified = {2013-03-06 21:24:15 +0000},
92     Journal = {Surface Science},
93     Keywords = {Au and (111) and CO},
94     Month = {June},
95     Pages = {995-1000},
96     Title = {The adsorption of CO on Au(111) at elevated pressures studied by STM, RAIRS, and DFT calculations},
97     Volume = {566-568},
98     Year = {2004}}
99    
100 jmichalk 3867 @article{StreitzMintmire:1994,
101     Author = {F. H. Streitz and J. W. Mintmire},
102     Date-Added = {2013-02-28 15:09:44 +0000},
103     Date-Modified = {2013-02-28 15:11:07 +0000},
104     Journal = {Phys. Rev. B},
105     Month = {October},
106     Number = {16},
107     Pages = {11996-12003},
108     Title = {Electrostatic potentials for metal-oxide surfaces and interfaces},
109     Volume = {50},
110     Year = {1994}}
111    
112 jmichalk 3862 @article{Williams:1994,
113     Author = {Ellen D. Williams},
114     Date-Added = {2013-02-20 19:36:23 +0000},
115     Date-Modified = {2013-02-20 19:38:05 +0000},
116     Journal = {Surface Science},
117     Pages = {502-524},
118     Rating = {5},
119     Title = {Surface steps and surface morphology: understanding macroscopic phenomena from atomic observations},
120     Volume = {299/300},
121     Year = {1994}}
122    
123     @article{Williams:1991,
124     Author = {Ellen D. Williams and N. C. Bartelt},
125     Date-Added = {2013-02-20 18:53:30 +0000},
126     Date-Modified = {2013-02-20 18:55:16 +0000},
127     Journal = {Science},
128     Keywords = {steps},
129     Month = {January},
130     Pages = {393-400},
131     Title = {Thermodynamics of Surface Morphology},
132     Volume = {251},
133     Year = {1991}}
134    
135 jmichalk 3860 @article{Pearl,
136     Author = {T. P. Pearl and S. J. Sibener},
137     Date-Added = {2013-01-21 21:18:40 +0000},
138     Date-Modified = {2013-01-21 21:20:29 +0000},
139     Journal = {J. Chem. Phys.},
140     Keywords = {Zipper},
141     Month = {July},
142     Number = {4},
143     Pages = {1916},
144     Title = {Oxygen driven reconstruction dynamics of Ni(977) measured by time-lapse scanning tunneling microscopy},
145     Volume = {115},
146     Year = {2001}}
147    
148     @article{McCarthy:2012,
149     Author = {D. N. McCarthy and C. E. Strebel and T. P. Johansson and A. den Dunnen and A. Nierhoff and J. H. Nielsen and Ib Chorkendorff},
150     Date-Added = {2013-01-09 20:03:45 +0000},
151     Date-Modified = {2013-01-09 20:06:33 +0000},
152     Journal = {J. Phys. Chem. C},
153     Keywords = {Mobility},
154     Month = {June},
155     Pages = {15353},
156     Title = {Structural Modification of Platinum Model Systems under High Pressure CO Annealing},
157     Volume = {116},
158     Year = {2012}}
159    
160 gezelter 3818 @article{PhysRevB.13.5188,
161     Author = {Monkhorst, Hendrik J. and Pack, James D.},
162     Date-Added = {2012-12-14 16:27:06 +0000},
163     Date-Modified = {2012-12-14 16:27:06 +0000},
164     Doi = {10.1103/PhysRevB.13.5188},
165     Journal = prb,
166     Month = {Jun},
167     Number = {12},
168     Numpages = {4},
169     Pages = {5188--5192},
170     Publisher = {American Physical Society},
171     Title = {Special points for Brillouin-zone integrations},
172     Volume = {13},
173     Year = {1976},
174     Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.13.5188}}
175    
176     @article{PhysRevB.59.1758,
177     Author = {Kresse, G. and Joubert, D.},
178     Date-Added = {2012-12-14 16:26:58 +0000},
179     Date-Modified = {2012-12-14 16:26:58 +0000},
180     Doi = {10.1103/PhysRevB.59.1758},
181     Journal = prb,
182     Month = {Jan},
183     Number = {3},
184     Numpages = {17},
185     Pages = {1758--1775},
186     Publisher = {American Physical Society},
187     Title = {From ultrasoft pseudopotentials to the projector augmented-wave method},
188     Volume = {59},
189     Year = {1999},
190     Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.59.1758}}
191    
192     @article{PhysRevB.50.17953,
193     Author = {Bl\"ochl, P. E.},
194     Date-Added = {2012-12-14 16:26:51 +0000},
195     Date-Modified = {2012-12-14 16:26:51 +0000},
196     Doi = {10.1103/PhysRevB.50.17953},
197     Journal = prb,
198     Month = {Dec},
199     Number = {24},
200     Numpages = {26},
201     Pages = {17953--17979},
202     Publisher = {American Physical Society},
203     Title = {Projector augmented-wave method},
204     Volume = {50},
205     Year = {1994},
206     Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.50.17953}}
207    
208 jmichalk 3817 @article{Tao2008,
209     Author = {F. Tao and M.~E. Grass and Y. Zhang and D.~R. Butcher and J.~R. Renzas and Z. Liu and J.~Y. Chung and B. S. Mun and M. Salmeron and G.~A. Somorjai},
210     Date-Added = {2012-12-15 22:06:57 +0000},
211     Date-Modified = {2012-12-15 22:12:10 +0000},
212     Journal = {Science},
213     Month = {November},
214     Pages = {932},
215     Title = {Reaction-Driven Restructuring of Rh-Pd and Pt-Pd Core-Shell Nanoparticles},
216     Volume = {322},
217     Year = {2008}}
218    
219     @article{Tao2011,
220     Author = {F. Tao and M. Salmeron},
221     Date-Added = {2012-12-15 22:05:07 +0000},
222     Date-Modified = {2012-12-15 22:06:26 +0000},
223     Journal = {Science},
224     Month = {Jan},
225     Pages = {171},
226     Title = {In Situ Studies of Chemistry and Structure of Materials in Reactive Environments},
227     Volume = {331},
228     Year = {2011}}
229    
230 jmichalk 3816 @article{TPD_Gold,
231     Author = {G. S. Elliot and D. R. Miller},
232     Date-Added = {2012-12-14 21:32:06 +0000},
233     Date-Modified = {2012-12-14 21:33:43 +0000},
234     Journal = {Proc. 14th Int. Symp. on Rarefied Gas Dynamics},
235     Pages = {349-58},
236     Year = {1984}}
237    
238 jmichalk 3813 @article{Ewald,
239     Author = {C. J. Fennell and J. D. Gezelter},
240     Date-Added = {2012-12-14 04:22:33 +0000},
241     Date-Modified = {2012-12-14 04:23:31 +0000},
242     Journal = {J. Chem. Phys.},
243     Keywords = {Ewald and OpenMD},
244     Month = {June},
245     Pages = {234104},
246     Title = {Is the Ewald summation still necessary? Pairwise alternatives to the accepted standard for long-range electrostatics},
247     Volume = {124},
248     Year = {2006}}
249    
250     @article{OOPSE,
251     Author = {Meineke, Matthew A. and Vardeman, Charles F. and Lin, Teng and Fennell, Christopher J. and Gezelter, J. Daniel},
252     Date-Added = {2012-12-14 04:19:33 +0000},
253     Date-Modified = {2012-12-14 04:19:40 +0000},
254     Doi = {10.1002/jcc.20161},
255     Issn = {1096-987X},
256     Journal = {Journal of Computational Chemistry},
257     Keywords = {OOPSE, molecular dynamics},
258     Number = {3},
259     Pages = {252--271},
260     Publisher = {Wiley Subscription Services, Inc., A Wiley Company},
261     Title = {OOPSE: An object-oriented parallel simulation engine for molecular dynamics},
262     Url = {http://dx.doi.org/10.1002/jcc.20161},
263     Volume = {26},
264     Year = {2005},
265     Bdsk-Url-1 = {http://dx.doi.org/10.1002/jcc.20161}}
266    
267 jmichalk 3812 @article{Monkhorst:1976,
268     Author = {Monkhorst, Hendrik J. and Pack, James D.},
269     Date-Added = {2012-12-14 02:25:00 +0000},
270     Date-Modified = {2012-12-14 02:25:11 +0000},
271     Doi = {10.1103/PhysRevB.13.5188},
272     Issue = {12},
273     Journal = {Phys. Rev. B},
274     Month = {Jun},
275     Pages = {5188--5192},
276     Publisher = {American Physical Society},
277     Title = {Special points for Brillouin-zone integrations},
278     Url = {http://link.aps.org/doi/10.1103/PhysRevB.13.5188},
279     Volume = {13},
280     Year = {1976},
281     Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevB.13.5188},
282     Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRevB.13.5188}}
283    
284     @article{Perdew_GGA,
285     Author = {Perdew, John P. and Burke, Kieron and Ernzerhof, Matthias},
286     Date-Added = {2012-12-14 01:59:04 +0000},
287     Date-Modified = {2012-12-14 01:59:12 +0000},
288     Doi = {10.1103/PhysRevLett.77.3865},
289     Issue = {18},
290     Journal = {Phys. Rev. Lett.},
291     Month = {Oct},
292     Pages = {3865--3868},
293     Publisher = {American Physical Society},
294     Title = {Generalized Gradient Approximation Made Simple},
295     Url = {http://link.aps.org/doi/10.1103/PhysRevLett.77.3865},
296     Volume = {77},
297     Year = {1996},
298     Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevLett.77.3865},
299     Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRevLett.77.3865}}
300    
301     @article{RRKJ_PP,
302     Author = {Rappe, Andrew M. and Rabe, Karin M. and Kaxiras, Efthimios and Joannopoulos, J. D.},
303     Date-Added = {2012-12-14 01:39:59 +0000},
304     Date-Modified = {2012-12-14 01:40:21 +0000},
305     Doi = {10.1103/PhysRevB.41.1227},
306     Issue = {2},
307     Journal = {Phys. Rev. B},
308     Month = {Jan},
309     Pages = {1227--1230},
310     Publisher = {American Physical Society},
311     Title = {Optimized pseudopotentials},
312     Url = {http://link.aps.org/doi/10.1103/PhysRevB.41.1227},
313     Volume = {41},
314     Year = {1990},
315     Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevB.41.1227},
316     Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRevB.41.1227}}
317    
318     @article{QE-2009,
319     Author = {Paolo Giannozzi and Stefano Baroni and Nicola Bonini and Matteo Calandra and Roberto Car and Carlo Cavazzoni and Davide Ceresoli and Guido L Chiarotti and Matteo Cococcioni and Ismaila Dabo and Andrea {Dal Corso} and Stefano de Gironcoli and Stefano Fabris and Guido Fratesi and Ralph Gebauer and Uwe Gerstmann and Christos Gougoussis and Anton Kokalj and Michele Lazzeri and Layla Martin-Samos and Nicola Marzari and Francesco Mauri and Riccardo Mazzarello and Stefano Paolini and Alfredo Pasquarello and Lorenzo Paulatto and Carlo Sbraccia and Sandro Scandolo and Gabriele Sclauzero and Ari P Seitsonen and Alexander Smogunov and Paolo Umari and Renata M Wentzcovitch},
320     Date-Added = {2012-12-14 01:34:50 +0000},
321     Date-Modified = {2012-12-14 01:34:50 +0000},
322     Journal = {Journal of Physics: Condensed Matter},
323     Number = {39},
324     Pages = {395502 (19pp)},
325     Title = {QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials},
326     Url = {http://www.quantum-espresso.org},
327     Volume = {21},
328     Year = {2009},
329     Bdsk-Url-1 = {http://www.quantum-espresso.org}}
330    
331 jmichalk 3811 @article{Deshlahra:2012,
332     Author = {P. Deshlahra and J. Conway and E. E. Wolf and W. F. Schneider},
333     Date-Added = {2012-12-13 20:31:25 +0000},
334     Date-Modified = {2012-12-13 20:32:44 +0000},
335     Journal = {Langumuir},
336     Keywords = {Dipole Interactions CO Pt},
337     Month = {April},
338     Pages = {8408},
339     Title = {Influence of Dipole-Dipole Interactions on Coverage-Dependent Adsorption: CO and NO on Pt(111)},
340     Volume = {28},
341     Year = {2012}}
342    
343     @article{Mason:2004,
344     Author = {S. E. Mason and I. Grinberg and A. M. Rappe},
345     Date-Added = {2012-12-13 20:23:19 +0000},
346     Date-Modified = {2012-12-13 20:24:28 +0000},
347     Journal = {Phys. Rev. B},
348     Keywords = {CO},
349     Month = {April},
350     Pages = {161401},
351     Title = {First-principles extrapolation method for accurate CO adsorption energies on metal surfaces},
352     Volume = {69},
353     Year = {2004}}
354    
355     @article{Deshlahra:2009,
356     Author = {P. Deshlahra and E. E. Wolf and W. F. Schneider},
357     Date-Added = {2012-12-13 20:06:26 +0000},
358     Date-Modified = {2012-12-13 20:07:35 +0000},
359     Journal = {J. Phys. Chem. A},
360     Keywords = {DFT CO Electric Fields},
361     Month = {February},
362     Pages = {4125},
363     Title = {A Periodic Density Functional Theory Analysis of CO Chemisorption on Pt(111) in the Presence of Uniform Electric Fields},
364     Volume = {113},
365     Year = {2009},
366     Bdsk-File-1 = {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}}
367    
368     @article{Ertl:1977,
369     Author = {G. Ertl and M. Neumann and K.M. Streit},
370     Date-Added = {2012-12-13 20:00:24 +0000},
371     Date-Modified = {2012-12-13 20:01:14 +0000},
372     Journal = {Surface Science},
373     Keywords = {CO Pt(111)},
374     Month = {January},
375     Pages = {393},
376     Title = {Chemisorption of CO on the Pt(111) Surface},
377     Volume = {64},
378     Year = {1977},
379     Bdsk-File-1 = {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}}
380    
381     @article{Hopster:1978,
382     Author = {H. Hopster and H. Ibach},
383     Date-Added = {2012-12-13 19:51:30 +0000},
384     Date-Modified = {2012-12-13 19:53:17 +0000},
385     Journal = {Surface Science},
386     Keywords = {EELS CO Pt},
387     Month = {April},
388     Pages = {109},
389     Title = {Adsorption of CO on Pt(111) and Pt 6(111) X (111) Studied by High Resolution Electron Energy Loss Spectroscopy and Thermal Desorption Spectroscopy},
390     Volume = {77},
391     Year = {1978},
392     Bdsk-File-1 = {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}}
393    
394     @article{Pons:1986,
395     Author = {C. Korzeniewski and S. Pons and P. P. Schmidt and M. W. Severson},
396     Date-Added = {2012-12-13 18:56:39 +0000},
397     Date-Modified = {2012-12-13 18:58:47 +0000},
398     Journal = {J. Chem. Phys.},
399     Keywords = {CO parameters},
400     Month = {June},
401     Pages = {4153},
402     Title = {A theoretical analysis of the vibrational spectrum of carbon monoxide on platinum metal electrodes},
403     Volume = {85},
404     Year = {1986}}
405    
406     @article{QuadrupoleCOCalc,
407     Author = {A. Rizzo and S. Coriani and A. Halkier and C. H{\"a}ttig},
408     Date-Added = {2012-12-13 17:53:33 +0000},
409     Date-Modified = {2012-12-13 18:59:05 +0000},
410     Journal = {J. Chem. Phys.},
411     Keywords = {Quadrupole; Ab initio},
412     Month = {May},
413     Pages = {3077},
414     Title = {Ab initio study of the electric-field-gradient-indeuced birefringence of a polar molecule: CO},
415     Volume = {113},
416     Year = {2000}}
417    
418     @article{QuadrupoleCO,
419     Author = {N. Chetty and V.~W. Couling},
420     Date-Added = {2012-12-12 21:36:59 +0000},
421     Date-Modified = {2012-12-12 21:38:48 +0000},
422     Journal = {J. Chem. Phys.},
423     Keywords = {CO; Quadrupole},
424     Month = {April},
425     Pages = {164307},
426     Title = {Measurement of the electric quadrupole moment of CO},
427     Volume = {134},
428     Year = {2011}}
429    
430 gezelter 3808 @article{Tao:2010,
431     Abstract = {Stepped single-crystal surfaces are viewed as models of real catalysts, which consist of small metal particles exposing a large number of low-coordination sites. We found that stepped platinum (Pt) surfaces can undergo extensive and reversible restructuring when exposed to carbon monoxide (CO) at pressures above 0.1 torr. Scanning tunneling microscopy and photoelectron spectroscopy studies under gaseous environments near ambient pressure at room temperature revealed that as the CO surface coverage approaches 100%, the originally flat terraces of (557) and (332) oriented Pt crystals break up into nanometer-sized clusters and revert to the initial morphology after pumping out the CO gas. Density functional theory calculations provide a rationale for the observations whereby the creation of increased concentrations of low-coordination Pt edge sites in the formed nanoclusters relieves the strong CO-CO repulsion in the highly compressed adsorbate film. This restructuring phenomenon has important implications for heterogeneous catalytic reactions.},
432     Author = {Tao, Feng and Dag, Sefa and Wang, Lin-Wang and Liu, Zhi and Butcher, Derek R. and Bluhm, Hendrik and Salmeron, Miquel and Somorjai, Gabor A.},
433     Date-Added = {2012-12-10 16:42:01 +0000},
434     Date-Modified = {2012-12-10 16:42:01 +0000},
435     Journal = {Science},
436     Keywords = {Pt CO reconstruction},
437     Number = {5967},
438     Pages = {850-853},
439     Title = {Break-Up of Stepped Platinum Catalyst Surfaces by High CO Coverage},
440     Volume = {327},
441     Year = {2010}}
442    
443     @article{Hendriksen:2002,
444     Abstract = {We have used a novel, high-pressure high-temperature scanning tunneling microscope, which is set
445     up as a flow reactor, to determine simultaneously the surface structure and the reactivity of a Pt(110)
446     model catalyst at semirealistic reaction conditions for CO oxidation. By controlled switching from a
447     CO-rich to an O2-rich flow and vice versa, we can reversibly oxidize and reduce the platinum surface.
448     The formation of the surface oxide has a dramatic effect on the CO2 production rate. Our results show
449     that there is a strict one-to-one correspondence between the surface structure and the catalytic activity,
450     and suggest a reaction mechanism which is not observed at low pressures.},
451     Author = {Hendriksen, B.L.M. and Frenken, J.W.M.},
452     Date-Added = {2012-12-10 16:41:58 +0000},
453     Date-Modified = {2012-12-10 16:41:58 +0000},
454     Journal = prl,
455     Keywords = {CO Mars van Krevelen noble metals oxidation oxides tunneling},
456     Pages = {0461011},
457     Title = {CO Oxidation on Pt(110): Scanning Tunneling Microscopy Inside a High-Pressure Flow Reactor},
458     Volume = {89},
459     Year = {2002}}
460    
461     @article{Ertl08,
462     Author = {G. Ertl},
463     Date-Added = {2012-12-10 16:41:30 +0000},
464     Date-Modified = {2012-12-10 16:41:30 +0000},
465     Isbn = {1433-7851},
466     Journal = {Angewandte Chemie-International Edition},
467     Junk = {PT: J; TC: 5},
468     Number = {19},
469     Pages = {3524-3535},
470     Title = {Reactions at surfaces: From atoms to complexity (Nobel lecture)},
471     Volume = {47},
472     Year = {2008}}
473    
474     @article{ISI:000083924800001,
475     Abstract = {{One of the prominent arguments for performing surface science studies
476     have for many years been to improve and design new and better catalysts.
477     Although surface science has provided the fundamental framework and
478     tools for understanding heterogeneous catalysis until now there have
479     been extremely few examples of actually designing new catalysts based
480     solely on surface science studies. In this review, we shall demonstrate
481     how a close collaboration between different fundamental disciplines like
482     structural-, theoretical-and reactivity-studies of surfaces as well as a
483     strong interaction with industry can have strong synergetic effects and
484     how this was used to develop a new catalyst. As so often before the
485     studies reviewed here were not initiated with the objective to solve a
486     specific problem, but realizing that a new class of very stable
487     two-dimensional alloys could be synthesized from otherwise immiscible
488     metals made it possible to present a new solution to a specific problem
489     in the industrial catalysis relating to methane activation in the steam
490     reforming process. Methane is the main constituent of natural gas and it
491     is an extremely important raw material for many large scale chemical
492     processes such as production of hydrogen, ammonia, and methanol. In the
493     steam reforming process methane and water are converted into a mixture
494     of mainly hydrogen and carbon monoxide, the so-called synthesis gas.
495     Industrially the steam reforming process usually takes place over a
496     catalyst containing small nickel crystallites highly dispersed on a
497     porous support material like aluminum/magnesium oxides in order to
498     achieve a high active metal area. There is a general consensus that the
499     rate limiting step of this process is the dissociative sticking of
500     methane on the nickel surface. Driven by the desire to understand this
501     step and hopefully be able to manipulate the reactivity, a large number
502     of investigations of the methane/nickel interaction have been performed
503     using nickel single crystals as model catalysts. The process has been
504     investigated, both under thermal conditions and by using supersonic
505     molecular beams elucidating the dynamical aspects of the interaction.
506     The results obtained will be reviewed both with respect to the clean and
507     modified nickel surfaces. Especially the two-dimensional gold-nickel
508     alloy system will be considered since the fundamental results here have
509     lead to the invention of a new nickel based catalyst, which is much more
510     resistant to carbon formation than the conventional nickel catalysts.
511     This may be one of the first examples of how fundamental research can
512     lead to the invention of new catalysts. Other overlayer/alloy
513     combinations, their stability, and reactivity are briefly discussed with
514     respect to manipulation of the surface reactivity towards methane. (C)
515     1999 Elsevier Science B.V. All rights reserved.}},
516     Address = {{PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS}},
517     Affiliation = {{Chorkendorff, I (Reprint Author), Univ Washington, Dept Chem, Seattle, WA 98195 USA.. Tech Univ Denmark, ICAT, Dept Phys,Ctr Atom Scale Mat Phys, Interdisciplinary Res Ctr Catalysis \& Camp, DK-2800 Lyngby, Denmark.}},
518     Author = {Larsen, JH and Chorkendorff, I},
519     Author-Email = {{ibchork@fysik.dtu.dk}},
520     Date-Added = {2012-12-10 16:40:26 +0000},
521     Date-Modified = {2012-12-10 16:40:26 +0000},
522     Doc-Delivery-Number = {{259ZX}},
523     Issn = {{0167-5729}},
524     Journal = {{SURFACE SCIENCE REPORTS}},
525     Journal-Iso = {{Surf. Sci. Rep.}},
526     Keywords-Plus = {{ACTIVATED DISSOCIATIVE CHEMISORPTION; SCANNING-TUNNELING-MICROSCOPY; ELECTRON-ENERGY-LOSS; NI-CU CATALYSTS; MOLECULAR-BEAM; METHANOL SYNTHESIS; CH4 DISSOCIATION; SURFACE SCIENCE; METAL-SURFACES; PRESSURE GAP}},
527     Language = {{English}},
528     Number = {{5-8}},
529     Number-Of-Cited-References = {{169}},
530     Pages = {{165-222}},
531     Publisher = {{ELSEVIER SCIENCE BV}},
532     Research-Areas = {{Chemistry; Physics}},
533     Researcherid-Numbers = {{Nielsen, Jane/A-9089-2011 Chorkendorff, Ib/C-7282-2008}},
534     Times-Cited = {{54}},
535     Title = {{From fundamental studies of reactivity on single crystals to the design of catalysts}},
536     Type = {{Review}},
537     Unique-Id = {{ISI:000083924800001}},
538     Volume = {{35}},
539     Web-Of-Science-Categories = {{Chemistry, Physical; Physics, Condensed Matter}},
540     Year = {{1999}}}
541    
542     @article{ISI:000083038000001,
543     Abstract = {{The properties of steps in thermal equilibrium are described in the
544     context of prediction of the stability and evolution of nanostructures
545     on surfaces. Experimental techniques for measuring the appropriate step
546     parameters are described, and simple lattice models for interpreting the
547     observations are reviewed. The concept of the step chemical potential
548     and its application to the prediction of step motion (and therefore
549     surface mass transport) is presented in depth. Examples of the
550     application of this step-continuum approach to experimental observations
551     of evolution of surface morphology are presented for morphological phase
552     transitions, the decay of metastable structures, and the spontaneous
553     evolution of metastable structure due to kinetic instabilities. (C) 1999
554     Elsevier Science B.V. All rights reserved.}},
555     Address = {{PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS}},
556     Affiliation = {{Williams, ED (Reprint Author), Univ Maryland, Mat Res Sci \& Engn Ctr, College Pk, MD 20742 USA.. Univ Maryland, Mat Res Sci \& Engn Ctr, College Pk, MD 20742 USA. Sejong Univ, Dept Phys, Seoul 143747, South Korea.}},
557     Author = {Jeong, HC and Williams, ED},
558     Author-Email = {{edw@physics.umd.edu}},
559     Date-Added = {2012-12-10 16:39:10 +0000},
560     Date-Modified = {2012-12-10 16:39:10 +0000},
561     Doc-Delivery-Number = {{244EC}},
562     Doi = {{10.1016/S0167-5729(98)00010-7}},
563     Issn = {{0167-5729}},
564     Journal = {{SURFACE SCIENCE REPORTS}},
565     Journal-Iso = {{Surf. Sci. Rep.}},
566     Keywords-Plus = {{SCANNING-TUNNELING-MICROSCOPY; VICINAL SI(111) SURFACES; REFLECTION ELECTRON-MICROSCOPY; ORIENTATIONAL PHASE-DIAGRAM; X-RAY-SCATTERING; TERRACE-WIDTH DISTRIBUTIONS; EQUILIBRIUM CRYSTAL SHAPE; SILICON SURFACES; ROUGHENING TRANSITION; METAL-SURFACES}},
567     Language = {{English}},
568     Number = {{6-8}},
569     Number-Of-Cited-References = {{343}},
570     Pages = {{171-294}},
571     Publisher = {{ELSEVIER SCIENCE BV}},
572     Research-Areas = {{Chemistry; Physics}},
573     Times-Cited = {{419}},
574     Title = {{Steps on surfaces: experiment and theory}},
575     Type = {{Review}},
576     Unique-Id = {{ISI:000083038000001}},
577     Volume = {{34}},
578     Web-Of-Science-Categories = {{Chemistry, Physical; Physics, Condensed Matter}},
579     Year = {{1999}},
580     Bdsk-Url-1 = {http://dx.doi.org/10.1016/S0167-5729(98)00010-7%7D}}
581    
582     @article{PhysRevB.37.3924,
583     Author = {Johnson, R. A.},
584     Date-Added = {2012-12-10 16:21:17 +0000},
585     Date-Modified = {2012-12-10 16:21:17 +0000},
586     Doi = {10.1103/PhysRevB.37.3924},
587     Journal = prb,
588     Month = {Mar},
589     Number = {8},
590     Numpages = {7},
591     Pages = {3924--3931},
592     Publisher = {American Physical Society},
593     Title = {Analytic nearest-neighbor model for fcc metals},
594     Volume = {37},
595     Year = {1988},
596     Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.37.3924}}
597    
598     @article{mishin01:cu,
599     Abstract = {We evaluate the ability of the embedded-atom method (EAM) potentials and the tight-binding (TB) method to predict reliably energies and stability of nonequilibrium structures by taking Cu as a model material. Two EAM potentials are used here. One is constructed in this work by using more fitting parameters than usual and including {\em ab initio} energies in the fitting database. The other potential was constructed previously using a traditional scheme. Excellent agreement is observed between {\em ab initio}, TB, and EAM results for the energies and stability of several nonequilibrium structures of Cu, as well as for energies along deformation paths between different structures. We conclude that not only TB calculations but also EAM potentials can be suitable for simulations in which correct energies and stability of different atomic configurations are essential, at least for Cu. The bcc, simple cubic, and diamond structures of Cu were identified as elastically unstable, while some other structures (e.g., hcp and 9R) are metastable. As an application of this analysis, nonequilibrium structures of epitaxial Cu films on (001)-oriented fcc or bcc substrates are evaluated using a simple model and atomistic simulations with an EAM potential. In agreement with experimental data, the structure of the film can be either deformed fcc or deformed hcp. The bcc structure cannot be stabilized by epitaxial constraints.},
600     Author = {Y. Mishin and M. J. Mehl and D. A. Papaconstantopoulos and A. F. Voter and J. D. Kress},
601     Date-Added = {2012-12-10 16:20:51 +0000},
602     Date-Modified = {2012-12-10 16:20:51 +0000},
603     Journal = prb,
604     Month = {June},
605     Pages = 224106,
606     Title = {Structural stability and lattice defects in copper: {\em Ab initio}, tight-binding, and embed-ded-atom methods},
607     Url = {http://link.aps.org/abstract/PRB/v63/e224106},
608     Volume = 63,
609     Year = 2001,
610     Bdsk-Url-1 = {http://link.aps.org/abstract/PRB/v63/e224106}}
611    
612     @article{mishin02:b2nial,
613     Abstract = {An embedded-atom potential has been constructed for the intermetallic compound B2-NiAl by fitting to both experimental properties and {\em ab initio} data. The {\em ab initio} data have been generated in the form of energy-volume relations for a number of alternative structures of NiAl and Ni$_3$Al, as well as for Ni and Al. The potential accurately reproduces the basic lattice properties of B2-NiAl, planar faults, and point-defect characteristics. It also reproduces the energetics and stability of all other structures included in the fit. The potential is applied to calculate equilibrium point-defect concentrations in B2-NiAl as functions of temperature and composition near the stoichiometry. In contrast to previous calculations, the defect formation entropies arising from atomic vibrations are included in our calculation within the quasiharmonic approximation. Such entropies tend to increase the concentrations of thermal point defects in B2-NiAl at high temperatures, but the atomic disorder mechanism remains triple-defect type up to the melting point.},
614     Author = {Y. Mishin and M. J. Mehl and D. A. Papaconstantopoulos},
615     Date-Added = {2012-12-10 16:20:51 +0000},
616     Date-Modified = {2012-12-10 16:20:51 +0000},
617     Journal = prb,
618     Month = {June},
619     Number = 22,
620     Pages = 224114,
621     Title = {Embedded-atom potential for B2-NiAl},
622     Url = {http://link.aps.org/abstract/PRB/v65/e224114},
623     Volume = 65,
624     Year = 2002,
625     Bdsk-Url-1 = {http://link.aps.org/abstract/PRB/v65/e224114}}
626    
627     @article{mishin05:phase_fe_ni,
628     Abstract = {First-principles calculations of the energy of various crystal structures of Fe, Ni and ordered Fe\x{2013}Ni compounds with different stoichiometries have been performed by the linearized augmented plane wave (LAPW) method in the generalized gradient approximation. The most stable compounds are L12\x{2013}Ni3Fe, L10\x{2013}FeNi, C11f\x{2013}Ni2Fe and C11f\x{2013}Fe2Ni. The L12\x{2013}Ni3Fe compound has the largest negative formation energy, which is consistent with the experimental Fe\x{2013}Ni phase diagram. The L10\x{2013}FeNi compound has also been observed experimentally in meteorite samples as a metastable phase. It is suggested here that the C11f compounds could also form in Fe\x{2013}Ni alloys at low temperatures. A new semi-empirical interatomic potential has been developed for the Fe\x{2013}Ni system by fitting to experimental data and the results of the LAPW calculations. Recognizing the significance of the covalent component of bonding in this system, the potential is based on the embedded-atom method (EAM) but additionally includes a bond-angle dependence. In comparison with the existing modified EAM method, our potential form is simpler, extends interactions to several (3\x{2013}5) coordination shells and replaces the screening procedure by a smooth cutoff of the potential functions. The potential reproduces a variety of properties of Fe and Ni with a reasonable accuracy. It also reproduces all stability trends across the Fe\x{2013}Ni system established by the LAPW calculations. The potential can be useful in atomistic simulations of the phases of the Fe\x{2013}Ni system.},
629     Author = {Y. Mishin and M.J. Mehl and D.A. Papaconstantopoulos},
630     Date-Added = {2012-12-10 16:20:51 +0000},
631     Date-Modified = {2012-12-10 16:20:51 +0000},
632     Journal = {Acta Mat.},
633     Month = {September},
634     Number = 15,
635     Pages = {4029-4041},
636     Title = {Phase stability in the Fe-Ni system: Investigation by first-principles calculations and atomistic simulations},
637     Url = {http://dx.doi.org/10.1016/j.actamat.2005.05.001},
638     Volume = 53,
639     Year = 2005,
640     Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.actamat.2005.05.001}}
641    
642     @article{mishin99:_inter,
643     Abstract = {We demonstrate an approach to the development of many-body interatomic potentials for monoatomic metals with improved accuracy and reliability. The functional form of the potentials is that of the embedded-atom method, but the interesting features are as follows: (1) The database used for the development of a potential includes both experimental data and a large set of energies of different alternative crystalline structures of the material generated by {\em ab initio} calculations. We introduce a rescaling of interatomic distances in an attempt to improve the compatibility between experimental and {\em ab initio} data. (2) The optimum parametrization of the potential for the given database is obtained by alternating the fitting and testing steps. The testing step includes a comparison between the {\em ab initio} structural energies and those predicted by the potential. This strategy allows us to achieve the best accuracy of fitting within the intrinsic limitations of the potential model. Using this approach we develop reliable interatomic potentials for Al and Ni. The potentials accurately reproduce basic equilibrium properties of these metals, the elastic constants, the phonon-dispersion curves, the vacancy formation and migration energies, the stacking fault energies, and the surface energies. They also predict the right relative stability of different alternative structures with coordination numbers ranging from 12 to 4. The potentials are expected to be easily transferable to different local environments encountered in atomistic simulations of lattice defects. },
644     Author = {Y. Mishin and D. Farkas and M. J. Mehl and D. A. Papaconstantopoulos},
645     Date-Added = {2012-12-10 16:20:51 +0000},
646     Date-Modified = {2012-12-10 16:20:51 +0000},
647     Journal = prb,
648     Number = 5,
649     Pages = {3393-3407},
650     Title = {Interatomic potentials for monoatomic metals from experimental data and ab initio calculations},
651     Url = {http://link.aps.org/abstract/PRB/v59/p3393},
652     Volume = 59,
653     Year = 1999,
654     Bdsk-Url-1 = {http://link.aps.org/abstract/PRB/v59/p3393}}
655    
656     @article{zope03:tial_ap,
657     Abstract = {Semiempirical interatomic potentials have been developed for Al, $\alpha$-Ti, and $\gamma$-TiAl within the embedded atom method (EAM) formalism by fitting to a large database of experimental as well as ab initio data. The ab initio calculations were performed by the linearized augmented plane wave (LAPW) method within the density functional theory to obtain the equations of state for a number of crystal structures of the Ti-Al system. Some of the calculated LAPW energies were used for fitting the potentials while others for examining their quality. The potentials correctly predict the equilibrium crystal structures of the phases and accurately reproduce their basic lattice properties. The potentials are applied to calculate the energies of point defects, surfaces, and planar faults in the equilibrium structures. Unlike earlier EAM potentials for the Ti-Al system, the proposed potentials provide a reasonable description of the lattice thermal expansion, demonstrating their usefulness for molecular-dynamics and Monte Carlo simulations at high temperatures. The energy along the tetragonal deformation path (Bain transformation) in $\gamma$-TiAl calculated with the EAM potential is in fairly good agreement with LAPW calculations. Equilibrium point defect concentrations in $\gamma$-TiAl are studied using the EAM potential. It is found that antisite defects strongly },
658     Author = {Rajendra R. Zope and Y. Mishin},
659     Date-Added = {2012-12-10 16:20:51 +0000},
660     Date-Modified = {2012-12-10 16:20:51 +0000},
661     Journal = prb,
662     Month = {July},
663     Pages = 024102,
664     Title = {Interatomic potentials for atomistic simulations of the Ti-Al system},
665     Url = {http://link.aps.org/abstract/PRB/v68/e024102},
666     Volume = 68,
667     Year = 2003,
668     Bdsk-Url-1 = {http://link.aps.org/abstract/PRB/v68/e024102}}
669    
670     @article{Shibata:2002hh,
671     Abstract = {We report on systematic studies of size-dependent alloy formation of silver-coated gold nanoparticles (NPs) in aqueous solution at ambient temperature using X-ray absorption fine structure spectroscopy (XAFS). Various Au-core sizes (2.5-20 nm diameter) and Ag shell thicknesses were synthesized using radiolytic wet techniques. The equilibrium structures (alloy versus core-shell) of these NPs were determined in the suspensions. We observed remarkable size dependence in the room temperature interdiffusion of the two metals. The interdiffusion is limited to the subinterface layers of the bimetallic NPs and depends on both the core size and the total particle size. For the very small particles (less than or equal to4.6 nm initial Au-core size), the two metals are nearly randomly distributed within the particle. However, even for these small Au-core NPs, the interdiffusion occurs primarily in the vicinity of the original interface. Features from the Ag shells do remain. For the larger particles, the boundary is maintained to within one monolayer. These results cannot be explained either by enhanced self-diffusion that results from depression of the melting point with size or by surface melting of the NPs. We propose that defects, such as vacancies, at the bimetallic interface enhance the radial migration (as well as displacement around the interface) of one metal into the other. Molecular dynamics calculations correctly predict the activation energy for diffusion of the metals in the absence of vacancies and show an enormous dependence of the rate of mixing on defect levels. They also suggest that a few percent of the interfacial lattice sites need to be vacant to explain the observed mixing.},
672     Address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA},
673     Author = {Shibata, T and Bunker, BA and Zhang, ZY and Meisel, D and {Vardeman II}, C.F. and Gezelter, JD},
674     Date = {OCT 9 2002},
675     Date-Added = {2012-12-10 16:20:36 +0000},
676     Date-Modified = {2012-12-10 16:20:36 +0000},
677     Doi = {DOI 10.1021/ja025764r},
678     Journal = jacs,
679     Pages = {11989-11996},
680     Publisher = {AMER CHEMICAL SOC},
681     Timescited = {75},
682     Title = {Size-dependent spontaneous alloying of Au-Ag nanoparticles},
683     Volume = {124},
684     Year = {2002},
685     Bdsk-Url-1 = {http://dx.doi.org/10.1021/ja025764r}}
686    
687     @article{BECQUART:1993rg,
688     Abstract = {Molecular dynamics simulations of fracture have been performed on the metals Al and Nb, and the intermetallic alloys RuAl, Nb3Al and NiAl. The forces and energies were modelled with embedded atom method potentials. The increasing external stress was applied using displacements of the outer boundaries of the array, calculated by anisotropic elasticity theory, until the pre-existing cracks propagated or dislocation nucleation occurred. The resulting critical stress intensity factor was calculated at various orientations and temperatures, and the results compared with theory. Observations of slip systems are reported, as well as values for surface energies and ''unstable stacking'' energies.},
689     Address = {PO BOX 564, 1001 LAUSANNE 1, SWITZERLAND},
690     Author = {BECQUART, CS and KIM, D and RIFKIN, JA and CLAPP, PC},
691     Date = {OCT 1 1993},
692     Date-Added = {2012-12-10 16:20:27 +0000},
693     Date-Modified = {2012-12-10 16:20:27 +0000},
694     Journal = {Materials Science and Engineering A-Structural Materials Properties Microstructure and Processing},
695     Pages = {87-94},
696     Publisher = {ELSEVIER SCIENCE SA LAUSANNE},
697     Timescited = {8},
698     Title = {FRACTURE PROPERTIES OF METALS AND ALLOYS FROM MOLECULAR-DYNAMICS SIMULATIONS},
699     Volume = {170},
700     Year = {1993}}
701    
702     @inproceedings{Rifkin1992,
703     Author = {J.~A. Rifkin and C.~S. Becquart and D. Kim and P.~C. Clapp},
704     Booktitle = {Computational Methods in Materials Science},
705     Date-Added = {2012-12-10 16:20:27 +0000},
706     Date-Modified = {2012-12-10 16:20:27 +0000},
707     Pages = {173},
708     Series = {MRS Symp. Proc.},
709     Title = {Dislocation Generation and Crack Propagation in Metals Examined in Molecular Dynamics Simulations},
710     Volume = {278},
711     Year = {1992}}
712    
713     @article{Shastry:1996qg,
714     Abstract = {The behaviour of mode I cracks in alpha-Fe is investigated using molecular statics computer simulation methods with an EAM potential. A double-ended crack of finite size embedded in a cylindrical simulation cell and fixed boundary conditions are prescribed along the periphery of the cell, whereas periodic boundary conditions are imposed parallel to the crack front. The displacement held of the finite crack is represented by that of an equivalent pile-up of opening dislocations distributed in a manner consistent with the anisotropy of the crystal and traction-free conditions of the crack faces. The crack lies on the {110} plane and the crack front is located along [100], [110] or [111] directions. The crack tip response is rationalized in terms of the surface energy (gamma(s)) of the cleavage plane and the unstable stacking energies (gamma(us)) of the slip planes emanating from the crack front.},
715     Address = {TECHNO HOUSE, REDCLIFFE WAY, BRISTOL, ENGLAND BS1 6NX},
716     Author = {Shastry, V and Farkas, D},
717     Date = {SEP 1996},
718     Date-Added = {2012-12-10 16:20:18 +0000},
719     Date-Modified = {2012-12-10 16:20:18 +0000},
720     Journal = {Modelling and Simulation In Materials Science and Engineering},
721     Pages = {473-492},
722     Publisher = {IOP PUBLISHING LTD},
723     Timescited = {31},
724     Title = {Molecular statics simulation of fracture in alpha-iron},
725     Volume = {4},
726     Year = {1996}}
727    
728     @article{Shastry:1998dx,
729     Abstract = {The behavior of mode I cracks in CoAl and FeAl is investigated using molecular statics computer simulation methods with embedded atom (EAM) potentials developed by Vailhe and Farkas (not yet published). A double ended crack of finite size embedded in a cylindrical simulation cell and fixed boundary conditions are prescribed along the periphery of the cell, whereas periodic boundary conditions are imposed parallel to the crack front. The displacement field of the finite crack is represented by that of an equivalent pileup of opening dislocations distributed in a manner consistent with the anisotropy of the crystal and traction free conditions of the crack faces. The crack lies on the {110} plane and the crack front is located either along [100], [110] or [111] directions. Cleavage in found to occur in both materials for most crack orientations. In one orientation, cleavage in FeAl is found to occur concurrently with dislocation emission. The crack tip response is rationalized in terms of the surface energy (gamma(s)) of the cleavage plane and the unstable stacking energies (gamma(us)) of the slip planes emanating from the crack front. (C) 1997 Elsevier Science Limited.},
730     Address = {THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND},
731     Author = {Shastry, V and Farkas, D},
732     Date = {MAR 1998},
733     Date-Added = {2012-12-10 16:20:18 +0000},
734     Date-Modified = {2012-12-10 16:20:18 +0000},
735     Journal = {Intermetallics},
736     Keywords = {aluminides; miscellaneous; iron aluminides based on FeAl; fracture mode; simulations; acoustic},
737     Pages = {95-104},
738     Publisher = {ELSEVIER SCI LTD},
739     Timescited = {3},
740     Title = {Atomistic simulation of fracture in CoAl and FeAl},
741     Volume = {6},
742     Year = {1998}}
743    
744     @article{Sankaranarayanan:2005lr,
745     Abstract = {Bimetallic nanoclusters are of interest because of their utility in catalysis and sensors, The thermal characteristics of bimetallic Pt-Pd nanoclusters of different sizes and compositions were investigated through molecular dynamics simulations using quantum Sutton-Chen (QSC) many-body potentials, Monte Carlo simulations employing the bond order simulation model were used to generate minimum energy configurations, which were utilized as the starting point for molecular dynamics simulations. The calculated initial configurations of the Pt-Pd system consisted of surface segregated Pd atoms and a Pt-rich core, Melting characteristics were studied by following the changes in potential energy and heat capacity as functions of temperature, Structural changes accompanying the thermal evolution were studied by the bond order parameter method. The Pt-Pd clusters exhibited a two-stage melting: surface melting of the external Pd atoms followed by homogeneous melting of the Pt core. These transitions were found to depend on the composition and size of the nanocluster. Melting temperatures of the nanoclusters were found to be much lower than those of bulk Pt and Pd. Bulk melting temperatures of Pd and Pt simulated using periodic boundary conditions compare well with experimental values, thus providing justification for the use of QSC potentials in these simulations. Deformation parameters were calculated to characterize the structural evolution resulting from diffusion of Pd and Pt atoms, The results indicate that in Pd-Pt clusters, Pd atoms prefer to remain at the surface even after melting. In addition, Pt also tends to diffuse to the surface after melting due to reduction of its surface energy with temperature. This mixing pattern is different from those reported in some of the earlier Studies on melting of bimetallics.},
746     Author = {Sankaranarayanan, SKRS and Bhethanabotla, VR and Joseph, B},
747     Date-Added = {2012-12-10 16:20:10 +0000},
748     Date-Modified = {2012-12-10 16:20:10 +0000},
749     Doi = {ARTN 195415},
750     Journal = prb,
751     Title = {Molecular dynamics simulation study of the melting of Pd-Pt nanoclusters},
752     Volume = {71},
753     Year = {2005},
754     Bdsk-Url-1 = {http://dx.doi.org/195415}}
755    
756     @article{sankaranarayanan:155441,
757     Author = {Subramanian K. R. S. Sankaranarayanan and Venkat R. Bhethanabotla and Babu Joseph},
758     Date-Added = {2012-12-10 16:20:10 +0000},
759     Date-Modified = {2012-12-10 16:20:10 +0000},
760     Eid = {155441},
761     Journal = prb,
762     Keywords = {molecular dynamics method; melting; platinum alloys; palladium alloys; nanowires; surface segregation; specific heat; diffusion; surface structure; solid-state phase transformations; thermal stability; annealing},
763     Local-Url = {file://localhost/Users/charles/Desktop/Papers/PhysRevB_74_155441.pdf},
764     Number = {15},
765     Numpages = {12},
766     Pages = {155441},
767     Publisher = {APS},
768     Title = {Molecular dynamics simulation study of the melting and structural evolution of bimetallic Pd-Pt nanowires},
769     Url = {http://link.aps.org/abstract/PRB/v74/e155441},
770     Volume = {74},
771     Year = {2006},
772     Bdsk-Url-1 = {http://link.aps.org/abstract/PRB/v74/e155441}}
773    
774     @article{Belonoshko00,
775     Author = {A.~B. Belonoshko and R. Ahuja and O. Eriksson and B. Johansson},
776     Date-Added = {2012-12-10 16:20:00 +0000},
777     Date-Modified = {2012-12-10 16:20:00 +0000},
778     Journal = prb,
779     Pages = {3838-3844},
780     Title = {Quasi {\it ab initio} Molecular Dynamic Study of $\mbox{Cu}$ Melting},
781     Volume = 61,
782     Year = 2000}
783    
784     @article{Medasani:2007uq,
785     Abstract = {We employ first-principles and empirical computational methods to study the surface energy and surface stress of silver nanoparticles. The structures, cohesive energies, and lattice contractions of spherical Ag nanoclusters in the size range 0.5-5.5 nm are analyzed using two different theoretical approaches: an ab initio density functional pseudopotential technique combined with the generalized gradient approximation and the embedded atom method. The surface energies and stresses obtained via the embedded atom method are found to be in good agreement with those predicted by the gradient-corrected ab initio density functional formalism. We estimate the surface energy of Ag nanoclusters to be in the range of 1.0-2.2 J/m(2). Our values are close to the bulk surface energy of silver, but are significantly lower than the recently reported value of 7.2 J/m(2) for free Ag nanoparticles derived from the Kelvin equation.},
786     Author = {Medasani, Bharat and Park, Young Ho and Vasiliev, Igor},
787     Date-Added = {2012-12-10 16:19:51 +0000},
788     Date-Modified = {2012-12-10 16:19:51 +0000},
789     Doi = {ARTN 235436},
790     Journal = prb,
791     Local-Url = {file://localhost/Users/charles/Documents/Papers/PhysRevB_75_235436.pdf},
792     Title = {Theoretical study of the surface energy, stress, and lattice contraction of silver nanoparticles},
793     Volume = {75},
794     Year = {2007},
795     Bdsk-Url-1 = {http://dx.doi.org/235436}}
796    
797     @article{Wang:2005qy,
798     Abstract = {The surface structures of cubo-octahedral Pt-Mo nanoparticles have been investigated using the Monte Carlo method and modified embedded atom method potentials that we developed for Pt-Mo alloys. The cubo-octahedral Pt-Mo nanoparticles are constructed with disordered fcc configurations, with sizes from 2.5 to 5.0 nm, and with Pt concentrations from 60 to 90 atom \%. The equilibrium Pt-Mo nanoparticle configurations were generated through Monte Carlo simulations allowing both atomic displacements and element exchanges at 600 K. We predict that the Pt atoms weakly segregate to the surfaces of such nanoparticles. The Pt concentrations in the surface are calculated to be 5-14 atom \% higher than the Pt concentrations of the nanoparticles. Moreover, the Pt atoms preferentially segregate to the facet sites of the surface, while the Pt and Mo atoms tend to alternate along the edges and vertexes of these nanoparticles. We found that decreasing the size or increasing the Pt concentration leads to higher Pt concentrations but fewer Pt-Mo pairs in the Pt-Mo nanoparticle surfaces.},
799     Author = {Wang, GF and Van Hove, MA and Ross, PN and Baskes, MI},
800     Date-Added = {2012-12-10 16:19:42 +0000},
801     Date-Modified = {2012-12-10 16:19:42 +0000},
802     Doi = {DOI 10.1021/jp050116n},
803     Journal = jpcb,
804     Pages = {11683-11692},
805     Title = {Surface structures of cubo-octahedral Pt-Mo catalyst nanoparticles from Monte Carlo simulations},
806     Volume = {109},
807     Year = {2005},
808     Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp050116n}}
809    
810     @article{Chui:2003fk,
811     Abstract = {Molecular dynamics simulations of a platinum nanocluster consisting 250 atoms were performed at different temperatures between 70 K and 298 K. The semi-empirical, many-body Sutton-Chen (SC) potential was used to model the interatomic interaction in the metallic system. Regions of core or bulk-like atoms and surface atoms can be defined from analyses of structures, atomic coordination, and the local density function of atoms as defined in the SC potential. The core atoms in the nanoparticle behave as bulk-like metal atoms with a predominant face centered cubic (fcc) packing. The interface between surface atoms and core atoms is marked by a peak in the local density function and corresponds to near surface atoms. The near surface atoms and surface atoms prefer a hexagonal closed packing (hcp). The temperature and size effects on structures of the nanoparticle and the dynamics of the surface region and the core region are discussed.},
812     Author = {Chui, YH and Chan, KY},
813     Date-Added = {2012-12-10 16:19:33 +0000},
814     Date-Modified = {2012-12-10 16:19:33 +0000},
815     Doi = {DOI 10.1039/b302122j},
816     Journal = pccp,
817     Pages = {2869-2874},
818     Title = {Analyses of surface and core atoms in a platinum nanoparticle},
819     Volume = {5},
820     Year = {2003},
821     Bdsk-Url-1 = {http://dx.doi.org/10.1039/b302122j}}
822    
823     @article{Thijsse:2002ly,
824     Abstract = {We show that the Stillinger-Weber (SW) potential is a special case of the modified embedded-atom method (MEAM) potential, by deriving the appropriate functional forms and parameter values for the MEAM potential. The electron density and pair potential functions have physically plausible forms. The embedding function is quadratic in the electron density and yields an antibonding contribution under all circumstances. Using these results SW silicon can be conveniently extended to silicon-metal systems within one theoretical framework and one computational scheme. The properties of SW silicon and silicon modeled by the native MEAM representation are compared.},
825     Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
826     Author = {Thijsse, BJ},
827     Date-Added = {2012-12-10 16:19:26 +0000},
828     Date-Modified = {2012-12-10 16:19:26 +0000},
829     Doi = {DOI 10.1103/PhysRevB.65.195207},
830     Isi = {000175860900066},
831     Isi-Recid = {124946812},
832     Isi-Ref-Recids = {115387317 80388368 102261636 80504184 109297089 57196433 63975437 69996932 73396725 110006580 52728075 53221357 124946813 90546162 124946814 117974311 120374655 120011084 51830448 104460616 55458979 112447170 67400671 65560311 119751303 77356902 109402061},
833     Journal = prb,
834     Month = may,
835     Number = {19},
836     Pages = {195207},
837     Publisher = {AMERICAN PHYSICAL SOC},
838     Times-Cited = {5},
839     Title = {Relationship between the modified embedded-atom method and Stillinger-Weber potentials in calculating the structure of silicon},
840     Volume = {65},
841     Year = {2002},
842     Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000175860900066}}
843    
844     @article{Timonova:2011ve,
845     Abstract = {By applying simulated annealing techniques we fit the modified embedded atom method (MEAM) potential to a database of ab initio energies for silicon and construct an improved parametrization of this potential. In addition, we introduce a new, reference-free version of the MEAM potential. This MEAM version is also fitted to the silicon data and shows an even better agreement, although the improvement is modest. Finally, we investigate whether increasing the number of different angular terms in the MEAM potential from 3 to 4 will lead to a better potential. The aim of this work is to determine a broad-ranged potential, one that is reliable in many different low-and high-energy atomic geometries in silicon crystals, molecules, near defects and under strain. To verify this, the performance of the new potentials is tested in different circumstances that were not explicitly included in the fit: relaxed defect energies, thermal expansion, melting temperature and liquid silicon. The new MEAM parametrizations found in this work, called MEAM-M and RF-MEAM, are shown to be overall more accurate than previous potentials-although a few defect energies are exceptions-and we recommend them for future work. The melting temperatures are closer to the experiment than those of other MEAM potentials, but they are still too high.},
846     Address = {DIRAC HOUSE, TEMPLE BACK, BRISTOL BS1 6BE, ENGLAND},
847     Author = {Timonova, Maria and Thijsse, Barend J.},
848     Date-Added = {2012-12-10 16:19:26 +0000},
849     Date-Modified = {2012-12-10 16:19:26 +0000},
850     Doi = {DOI 10.1088/0965-0393/19/1/015003},
851     Isi = {000285379000003},
852     Isi-Recid = {193845106},
853     Isi-Ref-Recids = {103829724 80388368 109297089 80504184 102589117 155514074 62869634 149106644 188936407 158671789 155514076 110736405 132267743 106496752 118427788 155694926 193845107 154569497 117049831 10160688 52733597 81974090 51830448 183685321 175165468 20842010 70690429 77065398 55458979 67400671 142854217 135344867 155514180 188936406 119751303 27109954},
854     Journal = {Modelling and Simulation In Materials Science and Engineering},
855     Month = jan,
856     Number = {1},
857     Pages = {015003},
858     Publisher = {IOP PUBLISHING LTD},
859     Times-Cited = {1},
860     Title = {Optimizing the MEAM potential for silicon},
861     Volume = {19},
862     Year = {2011},
863     Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000285379000003}}
864    
865     @article{Beurden:2002ys,
866     Abstract = {An atomistic interaction potential for adsorbate/surface systems is presented, based on the modified embedded-atom method (MEAM) and applied to CO on Pt. All parameters are determined using both density-functional theory (DFT) calculations, as well as the necessary experimental data. Whereas current DFT implementations suffer from problems in predicting the correct adsorption site of CO on Pt{111}, the current MEAM potential quantitatively describes the adsorption energies on the Pt {100} and {111} surfaces. With this potential, one is able to model, amongst others, diffusional properties and the CO induced lifting of the Pt{100}-hex surface reconstruction.},
867     Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
868     Author = {van Beurden, P and Verhoeven, HGJ and Kramer, GJ and Thijsse, BJ},
869     Date-Added = {2012-12-10 16:18:57 +0000},
870     Date-Modified = {2012-12-10 16:18:57 +0000},
871     Doi = {DOI 10.1103/PhysRevB.66.235409},
872     Isi = {000180279400100},
873     Isi-Recid = {127920116},
874     Isi-Ref-Recids = {100515854 102261636 80504184 86596468 49189551 87313608 118200797 104759623 114816277 43688858 123716000 60942681 32054494 79580399 119900392 112604328 104787214 95253353 85495097 59057119 91236942 69323123 116538925 123233489 110174182 98202194 97300927 104583045 80557185 118566443 106876514 93821961 43505343 72309405 74518216 62074706 51830448 68789690 92569536 88587013 60413345 119665908 112447170 47346043 127920117 121625154 119751303 127920118 119731850 113465338 94816645 98731048 109783982},
875     Journal = prb,
876     Month = dec,
877     Number = {23},
878     Pages = {235409},
879     Publisher = {AMERICAN PHYSICAL SOC},
880     Times-Cited = {12},
881     Title = {Atomistic potential for adsorbate/surface systems: CO on Pt},
882     Volume = {66},
883     Year = {2002},
884     Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000180279400100}}
885    
886     @article{Lee:2000vn,
887     Abstract = {The modified embedded-atom method, a first nearest-neighbor semiempirical model fur atomic potentials, can describe the physical properties of a wide range of elements and alloys with various lattice structures. However, the model is not quite successful for bcc metals in that it predicts the order among the size of low index surface energies incorrectly and that it generates a structure more stable than bcc for some bcc metals. In order to remove the problems, the formalism has been extended so that the second nearest neighbor interactions are taken into consideration. New parameters for Fe and comparisons between calculated and experimental physical properties of Fe are presented.},
888     Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
889     Author = {Lee, BJ and Baskes, MI},
890     Date-Added = {2012-12-10 16:18:48 +0000},
891     Date-Modified = {2012-12-10 16:18:48 +0000},
892     Isi = {000089733800002},
893     Isi-Recid = {117049831},
894     Isi-Ref-Recids = {53850993 80504184 86596468 70382555 109297089 87779199 102261636 64205027 69323074 31030374 57417776 95005783 72248812 51830448 9008933 31314512},
895     Journal = prb,
896     Month = oct,
897     Number = {13},
898     Pages = {8564--8567},
899     Publisher = {AMERICAN PHYSICAL SOC},
900     Times-Cited = {105},
901     Title = {Second nearest-neighbor modified embedded-atom-method potential},
902     Volume = {62},
903     Year = {2000},
904     Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000089733800002}}
905    
906     @article{Lee:2001qf,
907     Abstract = {{The second nearest-neighbor modified embedded atom method (MEAM)
908     {[}Phys. Rev. B 62, 8564 (2000)], developed in order to solve problems
909     of the original first nearest-neighbor MEAM on bcc metals, has now been
910     applied to all bcc transition metals, Fe, Cr, Mo, W, V, Nb, and Ta. The
911     potential parameters could be determined empirically by fitting to
912     (partial derivativeB/partial derivativeP), elastic constants, structural
913     energy differences among bcc, fcc and hcp structures, vacancy-formation
914     energy, and surface energy. Various physical properties of individual
915     elements, including elastic constants, structural properties,
916     point-defect properties, surface properties, and thermal properties were
917     calculated and compared with experiments or high level calculations so
918     that the reliability of the present empirical atomic-potential formalism
919     can be evaluated, It is shown that the present potentials reasonably
920     reproduce nonfitted properties of the bcc transition metals, as well as
921     the fitted properties. The effect of the size of radial cutoff distance
922     on the calculation and the compatibility with the original first
923     nearest-neighbor MEAM that has been successful for fcc, hcp, and other
924     structures are also discussed.}},
925     Address = {{ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA}},
926     Affiliation = {{Lee, BJ (Reprint Author), Korea Res Inst Stand \& Sci, Mat Evaluat Ctr, Yusong POB 102, Taejon 305600, South Korea. Korea Res Inst Stand \& Sci, Mat Evaluat Ctr, Taejon 305600, South Korea. Los Alamos Natl Lab, Struct Properties Relat Grp, Los Alamos, NM 87545 USA.}},
927     Article-Number = {{184102}},
928     Author = {Lee, BJ and Baskes, MI and Kim, H and Cho, YK},
929     Author-Email = {{bjlee@kriss.re.kr baskes@lanl.gov}},
930     Date-Added = {2012-12-10 16:18:48 +0000},
931     Date-Modified = {2012-12-10 16:18:48 +0000},
932     Doc-Delivery-Number = {{493TK}},
933     Doi = {{10.1103/PhysRevB.64.184102}},
934     Issn = {{0163-1829}},
935     Journal = prb,
936     Journal-Iso = {prb},
937     Keywords-Plus = {{ENERGY-ELECTRON-DIFFRACTION; SURFACE FREE-ENERGIES; MULTILAYER-RELAXATION; W(001) SURFACE; SILICON; RECONSTRUCTION; ELEMENTS; LEED; PSEUDOPOTENTIALS; W(110)}},
938     Language = {{English}},
939     Month = {{NOV 1}},
940     Number = {{18}},
941     Number-Of-Cited-References = {{46}},
942     Publisher = {{AMERICAN PHYSICAL SOC}},
943     Subject-Category = {{Physics}},
944     Times-Cited = {{136}},
945     Title = {{Second nearest-neighbor modified embedded atom method potentials for bcc transition metals}},
946     Type = {{Article}},
947     Unique-Id = {{ISI:000172239400030}},
948     Volume = {{64}},
949     Year = {{2001}},
950     Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.64.184102%7D}}
951    
952     @article{BASKES:1994fk,
953     Abstract = {The modified embedded atom method (MEAM) is an empirical extension of embedded atom method (EAM) that includes angular forces. The MEAM, which has previously been applied to the atoms in the FCC, BCC, and diamond cubic crystal systems, has been extended to the HCP crystal structure. Parameters have been determined for HCP metals that have c/a ratios less than ideal. The model is fitted to the lattice constants, elastic constants, cohesive energy, vacancy formation energy, and the BCC-HCP structural energy difference of these metals and is able to reproduce this extensive data base quite well. Structural energies and lattice constants of the HCP metals in a number of cubic structures are predicted. The divacancy is found to be unbound in all of the metals considered except for Be. Stacking fault and surface energies are found to be in reasonable agreement with experiment.},
954     Address = {TECHNO HOUSE, REDCLIFFE WAY, BRISTOL, ENGLAND BS1 6NX},
955     Author = {BASKES, MI and JOHNSON, RA},
956     Date-Added = {2012-12-10 16:18:35 +0000},
957     Date-Modified = {2012-12-10 16:18:35 +0000},
958     Isi = {A1994MZ57500011},
959     Isi-Recid = {86596468},
960     Isi-Ref-Recids = {67692914 13168554 70382555 80504184 64205027 52159305 52728075 48773580 73073438 49217991 75551275 85822177 8067494 50263912 51662888 71235089 18200957 51830448 67853369 54796423 31314512},
961     Journal = {Modelling and Simulation In Materials Science and Engineering},
962     Month = jan,
963     Number = {1},
964     Pages = {147--163},
965     Publisher = {IOP PUBLISHING LTD},
966     Times-Cited = {169},
967     Title = {MODIFIED EMBEDDED-ATOM POTENTIALS FOR HCP METALS},
968     Volume = {2},
969     Year = {1994},
970     Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=A1994MZ57500011}}
971    
972     @article{Ercolessi88,
973     Author = {F. Ercolessi and M. Parrinello and E. Tosatti},
974     Date-Added = {2012-12-10 16:18:27 +0000},
975     Date-Modified = {2012-12-10 16:18:27 +0000},
976     Journal = {Philosophical Magazine a},
977     Pages = {213-226},
978     Title = {Simulation of Gold in the Glue Model},
979     Volume = 58,
980     Year = 1988}
981    
982     @article{Qi99,
983     Author = {Y. Qi and T. Cagin and Y. Kimura and W.~A. {Goddard III}},
984     Date-Added = {2012-12-10 16:18:13 +0000},
985     Date-Modified = {2012-12-10 16:18:13 +0000},
986     Journal = prb,
987     Number = 5,
988     Pages = {3527-3533},
989     Title = {Molecular-Dynamics Simulations of Glass Formation and Crystallization in Binary Liquid Metals: $\mbox{Cu-Ag}$ and $\mbox{Cu-Ni}$},
990     Volume = 59,
991     Year = 1999}
992    
993     @unpublished{QSC,
994     Author = {Y. Kimura and T. Cagin and W. A. {Goddard III}},
995     Date-Added = {2012-12-10 16:18:07 +0000},
996     Date-Modified = {2012-12-10 16:18:07 +0000},
997     Note = {Downloaded from: $\mathtt{http://wag.caltech.edu/home-pages/tahir/psfiles/51.ps}$},
998     Title = {The Quantum Sutton-Chen Many Body Potential for Properties of FCC metals},
999     Url = {http://wag.caltech.edu/home-pages/tahir/psfiles/51.ps},
1000     Year = {1998},
1001     Bdsk-Url-1 = {citeseer.ist.psu.edu/150963.html}}
1002    
1003     @article{Chen90,
1004     Author = {A.~P. Sutton and J. Chen},
1005     Date-Added = {2012-12-10 16:17:59 +0000},
1006     Date-Modified = {2012-12-10 16:17:59 +0000},
1007     Journal = {Phil. Mag. Lett.},
1008     Pages = {139-146},
1009     Title = {Long-Range Finnis Sinclair Potentials},
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1012    
1013     @article{Finnis84,
1014     Author = {M.~W Finnis and J.~E. Sinclair},
1015     Date-Added = {2012-12-10 16:17:59 +0000},
1016     Date-Modified = {2012-12-10 16:17:59 +0000},
1017     Journal = {Phil. Mag. A},
1018     Pages = {45-55},
1019     Title = {A Simple Empirical N-Body Potential for Transition-Metals},
1020     Volume = 50,
1021     Year = 1984}
1022    
1023     @article{Alemany98,
1024     Author = {M.~M.~G. Alemany and C. Rey and L.~J. Gallego},
1025     Date-Added = {2012-12-10 16:17:52 +0000},
1026     Date-Modified = {2012-12-10 16:17:52 +0000},
1027     Journal = jcp,
1028     Pages = {5175-5176},
1029     Title = {Transport Coefficients of Liquid Transition Metals: \Uppercase{A} Computer Simulation Study Using the Embedded Atom Model},
1030     Volume = 109,
1031     Year = 1998}
1032    
1033     @article{Lu97,
1034     Author = {J. Lu and J.~A. Szpunar},
1035     Date-Added = {2012-12-10 16:17:42 +0000},
1036     Date-Modified = {2012-12-10 16:17:42 +0000},
1037     Journal = {Phil. Mag. A},
1038     Pages = {1057-1066},
1039     Title = {Applications of the Embedded-Atom Method to Glass Formation and Crystallization of Liquid and Glass Transition-Metal Nickel},
1040     Volume = {75},
1041     Year = {1997}}
1042    
1043     @article{Voter95a,
1044     Author = {A.~F. Voter},
1045     Date-Added = {2012-12-10 16:17:28 +0000},
1046     Date-Modified = {2012-12-10 16:17:28 +0000},
1047     Journal = {Intermetallic Compounds: Principles and Practice},
1048     Pages = {77},
1049     Title = {The Embedded-Atom Method},
1050     Volume = {1},
1051     Year = {1995}}
1052    
1053     @article{Plimpton93,
1054     Author = {S.~J. Plimpton and B.~A. Hendrickson},
1055     Date-Added = {2012-12-10 16:17:18 +0000},
1056     Date-Modified = {2012-12-10 16:17:18 +0000},
1057     Journal = {Mrs Proceedings},
1058     Pages = 37,
1059     Title = {Parallel Molecular Dynamics With the Embedded Atom Method},
1060     Volume = 291,
1061     Year = 1993}
1062    
1063     @article{Daw89,
1064     Author = {Murray~S. Daw},
1065     Date-Added = {2012-12-10 16:17:07 +0000},
1066     Date-Modified = {2012-12-10 16:17:07 +0000},
1067     Journal = prb,
1068     Pages = {7441-7452},
1069     Title = {Model of Metallic Cohesion: \Uppercase{T}He Embedded-Atom Method},
1070     Volume = 39,
1071     Year = 1989}
1072    
1073     @article{Johnson89,
1074     Author = {R.~A. Johnson},
1075     Date-Added = {2012-12-10 16:16:57 +0000},
1076     Date-Modified = {2012-12-10 16:16:57 +0000},
1077     Journal = prb,
1078     Number = 17,
1079     Pages = 12554,
1080     Title = {Alloy Models With the Embedded-Atom Method},
1081     Volume = 39,
1082     Year = 1989}
1083    
1084     @article{Daw84,
1085     Author = {M.~S. Daw and M.~I. Baskes},
1086     Date-Added = {2012-12-10 16:16:51 +0000},
1087     Date-Modified = {2012-12-10 16:16:51 +0000},
1088     Journal = prb,
1089     Number = 12,
1090     Pages = {6443-6453},
1091     Title = {Embedded-Atom Method: \Uppercase{D}Erivation and Application to Impurities, Surfaces, And Other Defects in Metals},
1092     Volume = 29,
1093     Year = 1984}
1094    
1095     @article{Foiles86,
1096     Author = {S.~M. Foiles and M.~I. Baskes and M.~S. Daw},
1097     Date-Added = {2012-12-10 16:16:51 +0000},
1098     Date-Modified = {2012-12-10 16:16:51 +0000},
1099     Journal = prb,
1100     Number = 12,
1101     Pages = 7983,
1102     Title = {Embedded-Atom-Method Functions for the Fcc Metals $\mbox{Cu, Ag, Au, Ni, Pd, Pt}$, And Their Alloys},
1103     Volume = 33,
1104     Year = 1986}
1105    
1106     @article{CAR:1985bh,
1107     Address = {COLLEGE PK},
1108     Af = {CAR, R PARRINELLO, M},
1109     Author = {CAR, R. and PARRINELLO, M.},
1110     Author-Address = {UNIV TRIESTE, DIPARTIMENTO FIS TEOR, I-34127 TRIESTE, ITALY.},
1111     Cited-Reference-Count = {12},
1112     Date-Added = {2012-12-10 16:16:34 +0000},
1113     Date-Modified = {2012-12-10 16:16:34 +0000},
1114     Document-Type = {Article},
1115     Doi = {10.1103/PhysRevLett.55.2471},
1116     Isi = {WOS:A1985AUN4900027},
1117     Isi-Document-Delivery-Number = {AUN49},
1118     Iso-Source-Abbreviation = {Phys. Rev. Lett.},
1119     Issn = {0031-9007},
1120     Journal = prl,
1121     Language = {English},
1122     Number = {22},
1123     Page-Count = {4},
1124     Pages = {2471--2474},
1125     Publication-Type = {J},
1126     Publisher = {AMER PHYSICAL SOC},
1127     Publisher-Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
1128     Reprint-Address = {CAR, R (reprint author), INT SCH ADV STUDIES SISSA, TRIESTE, ITALY.},
1129     Source = {PHYS REV LETT},
1130     Subject-Category = {Physics},
1131     Times-Cited = {5980},
1132     Title = {UNIFIED APPROACH FOR MOLECULAR-DYNAMICS AND DENSITY-FUNCTIONAL THEORY},
1133     Volume = {55},
1134     Wc = {Physics, Multidisciplinary},
1135     Year = {1985},
1136     Z9 = {6024},
1137     Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevLett.55.2471}}
1138    
1139     @article{Guidelli:2000fy,
1140     Abstract = {After a bird's eye view of double-layer models of interfaces between metals and aqueous solutions from their very beginning, recent developments are reviewed. The rule of the metal is examined by considering calculations ibr metal clusters and the jellium model, both in vacuo and in contact with model solutions. Integral equation approaches to the solution side of the interfaces are reviewed and compared with Monte Carlo and molecular dynamics simulations of analogous molecular models. Computer simulations of metal-water interfaces (including Car-Parinello simulations) and of ionic solution metal interfaces are considered. Finally, a field-theoretical approach to the double-layer and the treatment of rough electrodes are briefly reviewed. (C) 2000 Elsevier Science Ltd. All rights reserved.},
1141     Author = {Guidelli, R. and Schmickler, W.},
1142     Date = {2000},
1143     Date-Added = {2012-12-10 16:16:34 +0000},
1144     Date-Modified = {2012-12-10 16:16:34 +0000},
1145     Doi = {10.1016/S0013-4686(00)00335-2},
1146     Isi = {WOS:000087352000009},
1147     Issn = {0013-4686},
1148     Journal = ea,
1149     Number = {15-16},
1150     Pages = {2317--2338},
1151     Publication-Type = {J},
1152     Times-Cited = {47},
1153     Title = {Recent developments in models for the inter-face between a metal and an aqueous solution},
1154     Volume = {45},
1155     Year = {2000},
1156     Z8 = {0},
1157     Z9 = {47},
1158     Zb = {2},
1159     Bdsk-Url-1 = {http://dx.doi.org/10.1016/S0013-4686(00)00335-2}}
1160    
1161     @article{Izvekov:2000fv,
1162     Abstract = {An effective and computationally economical scheme, which unifies density functional description of a metal electronic structure and the classical molecular dynamics description of an electrolyte in contact with the metal, is described. The density functional part of the scheme comprises Car-Parinello and related formalisms. This scheme allows the extension to longer time scale of the simulation of metal-electrolyte interface while keeping fairly good accuracy in the prediction of the metal electronic structure. The numerical scheme is implemented in the relatively simple model of a metal cluster surrounded by an electrolyte. The elementary event of an atom leaving a metal surface as an ion stabilized by solvent molecules has been studied. In particular the potential of mean force of the ion as it dissolves was evaluated. The evolution of the solvation shell of the ion as it leaves the surface is calculated as a further example. (C) 2000 The Electrochemical Society. S0013-4651(00)01-066-1. All rights reserved.},
1163     Author = {Izvekov, S. and Philpott, M. R. and Eglitis, R. I.},
1164     Date = {JUN 2000},
1165     Date-Added = {2012-12-10 16:16:34 +0000},
1166     Date-Modified = {2012-12-10 16:16:34 +0000},
1167     Doi = {10.1149/1.1393520},
1168     Isi = {WOS:000087561800044},
1169     Issn = {0013-4651},
1170     Journal = {J. Electrochem. Soc.},
1171     Month = {Jun},
1172     Number = {6},
1173     Pages = {2273--2278},
1174     Publication-Type = {J},
1175     Times-Cited = {1},
1176     Title = {Ab initio simulation of metal cluster surrounded by electrolyte},
1177     Volume = {147},
1178     Year = {2000},
1179     Z8 = {0},
1180     Z9 = {1},
1181     Zb = {0},
1182     Bdsk-Url-1 = {http://dx.doi.org/10.1149/1.1393520}}
1183    
1184     @article{KRESSE:1993qf,
1185     Abstract = {We show that quantum-mechanical molecular-dynamics simulations in a finite-temperature local-density approximation based on the calculation of the electronic ground state and of the Hellmann-Feynman forces after each time step are feasible for liquid noble and transition metals. This is possible with the use of Vanderbilt-type ''ultrasoft'' pseudopotentials and efficient conjugate-gradient techniques for the determination of the electronic ground state. Results for liquid copper and vanadium are presented.},
1186     Author = {KRESSE, G. and HAFNER, J.},
1187     Date = {NOV 1 1993},
1188     Date-Added = {2012-12-10 16:16:18 +0000},
1189     Date-Modified = {2012-12-10 16:16:18 +0000},
1190     Doi = {10.1103/PhysRevB.48.13115},
1191     Isi = {WOS:A1993MF90100084},
1192     Issn = {0163-1829},
1193     Journal = prb,
1194     Month = {Nov},
1195     Number = {17},
1196     Pages = {13115--13118},
1197     Publication-Type = {J},
1198     Times-Cited = {1535},
1199     Title = {AB-INITIO MOLECULAR-DYNAMICS FOR OPEN-SHELL TRANSITION-METALS},
1200     Volume = {48},
1201     Year = {1993},
1202     Z8 = {27},
1203     Z9 = {1550},
1204     Zb = {13},
1205     Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.48.13115}}
1206    
1207     @article{KRESSE:1993ve,
1208     Abstract = {We present ab initio quantum-mechanical molecular-dynamics calculations based on the calculation of the electronic ground state and of the Hellmann-Feynman forces in the local-density approximation at each molecular-dynamics step. This is possible using conjugate-gradient techniques for energy minimization, and predicting the wave functions for new ionic positions using sub-space alignment. This approach avoids the instabilities inherent in quantum-mechanical molecular-dynamics calculations for metals based on the use of a fictitious Newtonian dynamics for the electronic degrees of freedom. This method gives perfect control of the adiabaticity and allows us to perform simulations over several picoseconds.},
1209     Author = {KRESSE, G. and HAFNER, J.},
1210     Date = {JAN 1 1993},
1211     Date-Added = {2012-12-10 16:16:18 +0000},
1212     Date-Modified = {2012-12-10 16:16:18 +0000},
1213     Doi = {10.1103/PhysRevB.47.558},
1214     Isi = {WOS:A1993KH03700082},
1215     Issn = {0163-1829},
1216     Journal = prb,
1217     Month = {Jan},
1218     Number = {1},
1219     Pages = {558--561},
1220     Publication-Type = {J},
1221     Times-Cited = {6464},
1222     Title = {ABINITIO MOLECULAR-DYNAMICS FOR LIQUID-METALS},
1223     Volume = {47},
1224     Year = {1993},
1225     Z8 = {130},
1226     Z9 = {6527},
1227     Zb = {54},
1228     Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.47.558}}
1229    
1230     @article{KRESSE:1994ul,
1231     Abstract = {We present ab initio quantum-mechanical molecular-dynamics simulations of the liquid-metal-amorphous-semiconductor transition in Ge. Our simulations are based on (a) finite-temperature density-functional theory of the one-electron states, (b) exact energy minimization and hence calculation of the exact Hellmann-Feynman forces after each molecular-dynamics step using preconditioned conjugate-gradient techniques, (c) accurate nonlocal pseudopotentials, and (d) Nose dynamics for generating a canonical ensemble. This method gives perfect control of the adiabaticity of the electron-ion ensemble and allows us to perform simulations over more than 30 ps. The computer-generated ensemble describes the structural, dynamic, and electronic properties of liquid and amorphous Ge in very good agreement with experiment. The simulation allows us to study in detail the changes in the structure-property relationship through the metal-semiconductor transition. We report a detailed analysis of the local structural properties and their changes induced by an annealing process. The geometrical, bonding, and spectral properties of defects in the disordered tetrahedral network are investigated and compared with experiment.},
1232     Author = {KRESSE, G. and HAFNER, J.},
1233     Date = {MAY 15 1994},
1234     Date-Added = {2012-12-10 16:16:18 +0000},
1235     Date-Modified = {2012-12-10 16:16:18 +0000},
1236     Doi = {10.1103/PhysRevB.49.14251},
1237     Isi = {WOS:A1994NR42300018},
1238     Issn = {0163-1829},
1239     Journal = prb,
1240     Month = {May},
1241     Number = {20},
1242     Pages = {14251--14269},
1243     Publication-Type = {J},
1244     Times-Cited = {3878},
1245     Title = {AB-INITIO MOLECULAR-DYNAMICS SIMULATION OF THE LIQUID-METAL AMORPHOUS-SEMICONDUCTOR TRANSITION IN GERMANIUM},
1246     Volume = {49},
1247     Year = {1994},
1248     Z8 = {58},
1249     Z9 = {3909},
1250     Zb = {17},
1251 gezelter 3818 Bdsk-File-1 = {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},
1252     Bdsk-Url-1 = {http://dx.doi.org/10.1103/PhysRevB.49.14251}}
1253 gezelter 3808
1254 jmichalk 3802 @article{doi:10.1126/science.1182122,
1255     Abstract = {Stepped single-crystal surfaces are viewed as models of real catalysts, which consist of small metal particles exposing a large number of low-coordination sites. We found that stepped platinum (Pt) surfaces can undergo extensive and reversible restructuring when exposed to carbon monoxide (CO) at pressures above 0.1 torr. Scanning tunneling microscopy and photoelectron spectroscopy studies under gaseous environments near ambient pressure at room temperature revealed that as the CO surface coverage approaches 100%, the originally flat terraces of (557) and (332) oriented Pt crystals break up into nanometer-sized clusters and revert to the initial morphology after pumping out the CO gas. Density functional theory calculations provide a rationale for the observations whereby the creation of increased concentrations of low-coordination Pt edge sites in the formed nanoclusters relieves the strong CO-CO repulsion in the highly compressed adsorbate film. This restructuring phenomenon has important implications for heterogeneous catalytic reactions.},
1256     Author = {Tao, Feng and Dag, Sefa and Wang, Lin-Wang and Liu, Zhi and Butcher, Derek R. and Bluhm, Hendrik and Salmeron, Miquel and Somorjai, Gabor A.},
1257     Date-Added = {2012-10-02 20:18:51 +0000},
1258     Date-Modified = {2012-10-04 21:56:41 +0000},
1259     Doi = {10.1126/science.1182122},
1260     Eprint = {http://www.sciencemag.org/content/327/5967/850.full.pdf},
1261     Journal = {Science},
1262     Number = {5967},
1263     Pages = {850-853},
1264     Rating = {5},
1265     Read = {1},
1266     Title = {Break-Up of Stepped Platinum Catalyst Surfaces by High CO Coverage},
1267     Url = {http://www.sciencemag.org/content/327/5967/850.abstract},
1268     Volume = {327},
1269     Year = {2010},
1270     Bdsk-Url-1 = {http://www.sciencemag.org/content/327/5967/850.abstract},
1271     Bdsk-Url-2 = {http://dx.doi.org/10.1126/science.1182122}}
1272    
1273     @article{0953-8984-16-8-001,
1274     Abstract = {We have studied the trends in CO adsorption on close-packed metal surfaces: Co, Ni, Cu from the 3d row, Ru, Rh, Pd, Ag from the 4d row and Ir, Pt, Au from the 5d row using density functional theory. In particular, we were concerned with the trends in adsorption energy, geometry, vibrational properties and other parameters derived from the electronic structure of the substrate. The influence of specific changes in our set-up, such as choice of the exchange correlation functional, the choice of pseudopotential, size of the basis set and substrate relaxation, has been carefully evaluated. We found that, while the geometrical and vibrational properties of the adsorbate--substrate complex are calculated with high accuracy, the adsorption energies calculated with the gradient-corrected Perdew--Wang exchange--correlation energies are overestimated. In addition, the calculations tend to favour adsorption sites with higher coordination, resulting in the prediction of the wrong adsorption sites for the Rh, Pt and Cu surfaces (hollow instead of top). The revised Perdew--Burke--Erzernhof functional (RPBE) leads to lower (i.e. more realistic) adsorption energies for transition metals, but to the wrong results for noble metals---for Ag and Au, endothermic adsorption is predicted. The site preference remains the same. We discuss trends in relation to the electronic structure of the substrate across the periodic table, summarizing the state-of-the-art of CO adsorption on close-packed metal surfaces.},
1275     Author = {Marek Gajdo{\v s} and Andreas Eichler and J{\"u}rgen Hafner},
1276     Date-Added = {2012-09-17 20:05:54 +0000},
1277     Date-Modified = {2012-09-17 20:05:54 +0000},
1278     Journal = {Journal of Physics: Condensed Matter},
1279     Number = {8},
1280     Pages = {1141},
1281     Title = {CO adsorption on close-packed transition and noble metal surfaces: trends from ab initio calculations},
1282     Url = {http://stacks.iop.org/0953-8984/16/i=8/a=001},
1283     Volume = {16},
1284     Year = {2004},
1285     Bdsk-Url-1 = {http://stacks.iop.org/0953-8984/16/i=8/a=001}}
1286    
1287     @article{PhysRevB.39.7441,
1288     Author = {Daw, Murray S.},
1289     Date-Added = {2012-09-17 20:02:31 +0000},
1290     Date-Modified = {2012-09-17 20:02:31 +0000},
1291     Doi = {10.1103/PhysRevB.39.7441},
1292     Issue = {11},
1293     Journal = {Phys. Rev. B},
1294     Month = {Apr},
1295     Pages = {7441--7452},
1296     Publisher = {American Physical Society},
1297     Title = {Model of metallic cohesion: The embedded-atom method},
1298     Url = {http://link.aps.org/doi/10.1103/PhysRevB.39.7441},
1299     Volume = {39},
1300     Year = {1989},
1301 gezelter 3808 Bdsk-File-1 = {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},
1302 jmichalk 3802 Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevB.39.7441},
1303     Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRevB.39.7441}}
1304    
1305     @article{EAM,
1306     Author = {Foiles, S. M. and Baskes, M. I. and Daw, M. S.},
1307     Date-Added = {2012-09-17 19:47:39 +0000},
1308     Date-Modified = {2012-09-17 19:49:04 +0000},
1309     Journal = {Phys. Rev. B},
1310     Keywords = {EAM},
1311     Month = {June},
1312     Number = {12},
1313     Pages = {7983-7991},
1314     Title = {Embedded-atom-method functions for the fcc metals Cu, Ag, Au, Ni, Pd, Pt, and their alloys},
1315     Volume = {33},
1316     Year = {1986},
1317 jmichalk 3811 Bdsk-File-1 = {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}}
1318 jmichalk 3802
1319     @article{doi:10.1021/jp0665729,
1320     Author = {Yim, Wai-Leung and Nowitzki, Tobias and Necke, Mandus and Schnars, Hanno and Nickut, Patricia and Biener, J{\"u}rgen and Biener, Monika M. and Zielasek, Volkmar and Al-Shamery, Katharina and Kl{\"u}ner, Thorsten and B{\"a}umer, Marcus},
1321     Date-Added = {2012-09-06 21:14:21 +0000},
1322     Date-Modified = {2012-09-06 21:14:21 +0000},
1323     Doi = {10.1021/jp0665729},
1324     Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp0665729},
1325     Journal = {The Journal of Physical Chemistry C},
1326     Number = {1},
1327     Pages = {445-451},
1328     Title = {Universal Phenomena of CO Adsorption on Gold Surfaces with Low-Coordinated Sites},
1329     Url = {http://pubs.acs.org/doi/abs/10.1021/jp0665729},
1330     Volume = {111},
1331     Year = {2007},
1332     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp0665729},
1333     Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp0665729}}
1334    
1335     @article{Straub,
1336     Author = {John E. Straub and Martin Karplus},
1337     Date-Added = {2012-08-30 21:54:17 +0000},
1338     Date-Modified = {2012-08-30 21:54:59 +0000},
1339     Journal = {Chemical Physics},
1340     Keywords = {CO and model},
1341     Month = {June},
1342     Pages = {221-248},
1343     Title = {Molecular Dynamics Study of the Photodissociation of Carbon Monoxide from Myoglobin: Ligand Dynamics in the first 10 ps},
1344     Volume = {158},
1345     Year = {1991},
1346 gezelter 3808 Bdsk-File-1 = {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}}
1347 jmichalk 3802
1348     @article{Yeo,
1349     Abstract = {Single crystal adsorption calorimetry was applied to investigate the heats of adsorption of CO and oxygen and the reaction heats for the CO oxidation process on Pt􏰊111􏰋 at room temperature. Both sticking probabilities and heats of adsorption for CO and oxygen are presented as a function of coverage. These results are used to interpret the subsequent measurements taken for the CO oxidation process on the same surface. The initial heats of adsorption of CO and oxygen on Pt􏰊111􏰋 are 180􏰛8 and 339􏰛32 kJ/mol, respectively. In addition the pairwise lateral repulsive interaction between CO molecules in a 􏰔􏰜3􏰙􏰜3􏰈R30$\,^{\circ}$ ordered layer at 􏰒􏰚1/3 is found to be 4 kJ/mol. A detailed Monte Carlo modeling of the dissociative adsorption and sticking probability of oxygen on Pt􏰊111􏰋 is performed. The initial rapid fall in heat is attributed to adsorption on defect sites, and subsequent adsorption on the planar 􏰊111􏰋 surface proceeds with a third neighbor interaction energy between the oxygen adatoms 􏰓3􏰌22 kJ/mol. When gaseous CO reacts with preadsorbed oxygen adatoms, the CO2 produced has an excess energy of 16􏰛8 kJ/mol. {\copyright} 1997 American Institute of Physics. 􏰎S0021-9606􏰔97􏰈02601-9􏰉},
1350     Author = {Y. Y. Yeo and L. Vattuone and D. A. King},
1351     Date-Added = {2012-08-30 21:41:16 +0000},
1352     Date-Modified = {2012-08-30 21:53:19 +0000},
1353     Journal = {J. Chem. Phys.},
1354     Keywords = {Calorimetry and CO and Platinum and 111 and Adsorption},
1355     Month = {January},
1356     Pages = {392-402},
1357     Title = {Calorimetric heats for CO and oxygen adsorption and for the catalytic CO oxidation reaction on Pt{111}},
1358     Volume = {106},
1359     Year = {1997},
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1361 jmichalk 3802
1362 jmichalk 3811 @article{Feibelman:2001,
1363 jmichalk 3802 Abstract = {Notwithstanding half a dozen theoretical publications, well-converged density- functional calculations, whether based on a local-density or generalized-gradient exchange-correlation potential, whether all-electron or employing pseudopotentials, underestimate CO's preference for low-coordination binding sites on Pt(111) and vicinals to it. For example, they imply that CO should prefer hollow- to atop-site adsorption on Pt(111), in apparent contradiction to a host of low-temperature experimental studies.},
1364     Author = {P. J. Feibelman and et al.},
1365     Date-Added = {2012-08-30 20:46:42 +0000},
1366 jmichalk 3811 Date-Modified = {2012-12-13 20:08:45 +0000},
1367 jmichalk 3802 Journal = {J. Phys. Chem. B},
1368     Keywords = {CO and Platinum},
1369     Pages = {4018-4025},
1370     Title = {The CO/Pt(111) Puzzle},
1371     Volume = {105},
1372     Year = {2001},
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1374 jmichalk 3802
1375 jmichalk 3811 @article{Kelemen:1979,
1376 jmichalk 3802 Abstract = {The desorption of CO from clean Pt(lll) and (loo), and from the same surfaces with par- tial overlayers of sulfur, was studied by Thermal Desorption Spectroscopy. The method of desorption rate isotherms was employed for data analysis. The desorption of CO from the (Ill) surface and both surfaces with ordered sulfur overlayers can be described as a first order process with coverage dependent activation energies. The desorption of CO from the clean Pt(100) surface is complicated by the dynamic interaction of the molecule with a thermally activated change of platinum surface structure. On both platinum faces surface sulfur decreases the initial binding energy of CO. As the CO concentration increases, its binding energy decreases very rapidly. This is due to a repulsive interaction which exists between co-adsorbed species.},
1377     Author = {S.R. Kelemen and T.E. Fischer and J.A. Schwarz},
1378     Date-Added = {2012-08-30 19:49:26 +0000},
1379 jmichalk 3811 Date-Modified = {2012-12-13 20:03:25 +0000},
1380 jmichalk 3802 Journal = {Surface Science},
1381     Keywords = {Platinum and CO},
1382     Pages = {440-450},
1383     Rating = {5},
1384     Read = {1},
1385     Title = {The Binding Energy of CO on Clean and Sulfur Covered Platinum Surfaces},
1386     Year = {1979},
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