ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/group/trunk/NPthiols/NPthiols.tex
(Generate patch)

Comparing trunk/NPthiols/NPthiols.tex (file contents):
Revision 4376 by gezelter, Mon Oct 26 19:00:52 2015 UTC vs.
Revision 4384 by gezelter, Wed Oct 28 14:54:40 2015 UTC

# Line 21 | Line 21
21   %  Add 'draft' option to mark overfull boxes with black boxes
22   %  Add 'showpacs' option to make PACS codes appear
23   %\documentclass[aps,jcp,twocolumn,showpacs,superscriptaddress,groupedaddress]{revtex4}  % for review and submission
24 < \documentclass[aps,jcp,preprint,showpacs,superscriptaddress,groupedaddress]{revtex4}  % for double-spaced preprint
24 > \documentclass[aps,jcp,preprint,showpacs,superscriptaddress,groupedaddress]{revtex4-1}  % for double-spaced preprint
25   \usepackage{graphicx}  % needed for figures
26 \usepackage{dcolumn}   % needed for some tables
26   \usepackage{bm}        % for math
27   \usepackage{amssymb}   % for math
29 %\usepackage{booktabs}
30 \usepackage{multirow}
31 \usepackage{tablefootnote}
28   \usepackage{times}
29   \usepackage[version=3]{mhchem}
30   \usepackage{lineno}
# Line 48 | Line 44
44    Molecular dynamics simulations of thiolate-protected and solvated
45    gold nanoparticles were carried out in the presence of a
46    non-equilibrium heat flux between the solvent and the core of the
47 <  particle.  The interfacial thermal conductance ($G$) was computed
48 <  for these interfaces, and the behavior of the thermal conductance
49 <  was studied as a function of particle size, ligand flexibility, and
47 >  particle. The interfacial thermal conductance ($G$) was computed for
48 >  these interfaces, and the behavior of the thermal conductance was
49 >  studied as a function of particle size, ligand flexibility, and
50    ligand chain length. In all cases, thermal conductance of the
51    ligand-protected particles was higher than the bare metal--solvent
52    interface.  A number of mechanisms for the enhanced conductance were
53    investigated, including thiolate-driven corrugation of the metal
54    surface, solvent ordering at the interface, solvent-ligand
55    interpenetration, and ligand ordering relative to the particle
56 <  surface.  MORE HERE.
56 >  surface. Only the smallest particles exhibited significant
57 >  corrugation.  All ligands permitted substantial solvent-ligand
58 >  interpenetration, and ligand chain length has a significant
59 >  influence on the orientational ordering of interfacial solvent.
60 >  Solvent -- ligand vibrational overlap, particularly in the low
61 >  frequency range ($< 80 \mathrm{cm}^{-1}$) was significantly altered
62 >  by ligand rigidity, and had direct influence on the interfacial
63 >  thermal conductance.
64   \end{abstract}
65  
66   \pacs{}
# Line 164 | Line 167 | dynamics of ligands on metallic nanoparticles have bee
167   surfaces of spherical nanoparticles. Thus, as new applications of
168   ligand-stabilized nanostructures have been proposed, the structure and
169   dynamics of ligands on metallic nanoparticles have been studied using
170 < molecular simulation,\cite{Henz2007,Henz:2008qf} NMR, XPS, FTIR,
170 > molecular simulation,\cite{Henz:2008qf} NMR, XPS, FTIR,
171   calorimetry, and surface
172   microscopies.\cite{Badia1996:2,Badia1996,Badia1997:2,Badia1997,Badia2000}
173   Badia, \textit{et al.} used transmission electron microscopy to
# Line 176 | Line 179 | the thiolate alkane chains will lie flat on the nanopa
179   neighboring particles.\cite{Badia1996} The molecular dynamics
180   simulations of Henz, \textit{et al.} indicate that at low coverages,
181   the thiolate alkane chains will lie flat on the nanoparticle
182 < surface\cite{Henz2007,Henz:2008qf} Above 90\% coverage, the ligands
182 > surface\cite{Henz:2008qf} Above 90\% coverage, the ligands
183   stand upright and recover the rigidity and tilt angle displayed on
184   planar facets. Their simulations also indicate a high degree of mixing
185   between the thiolate sulfur atoms and surface gold atoms at high
# Line 206 | Line 209 | information.
209      \protect\cite{landman:1998},~\protect\cite{vlugt:cpc2007154},~and
210      \protect\cite{hautman:4994}.}
211    \label{fig:structures}
212 + \bibpunct{[}{]}{,}{n}{}{,}
213   \end{figure}
214  
215  
# Line 303 | Line 307 | potentials were used for non-bonded interactions.
307   intra-molecular sites closer than 3 bonds. Effective Lennard-Jones
308   potentials were used for non-bonded interactions.
309  
310 < To describe the interactions between metal (Au) and non-metal atoms,
311 < potential energy terms were adapted from an adsorption study of alkyl
312 < thiols on gold surfaces by Vlugt, \textit{et
313 <  al.}\cite{vlugt:cpc2007154} They fit an effective pair-wise
310 > The TraPPE-UA force field includes parameters for thiol
311 > molecules\cite{TraPPE-UA.thiols} as well as unsaturated and aromatic
312 > carbon sites.\cite{TraPPE-UA.alkylbenzenes} These were used for the
313 > thiolate molecules in our simulations, and missing parameters for the
314 > ligands were supplemented using fits described in the supporting
315 > information.  Bonds are typically rigid in TraPPE-UA, so although
316 > equilibrium bond distances were taken from TraPPE-UA, flexible bonds
317 > were allowed bond stretching spring constants from the OPLS-AA force
318 > field.\cite{Jorgensen:1996sf}
319 >
320 > To derive suitable parameters for the thiolates adsorbed on Au(111)
321 > surfaces, we adopted the S parameters from Luedtke and
322 > Landman\cite{landman:1998} and modified the parameters for the CTS
323 > atom to maintain charge neutrality in the molecule.
324 >
325 > Other interactions between metal (Au) and non-metal atoms were adapted
326 > from an adsorption study of alkyl thiols on gold surfaces by Vlugt,
327 > \textit{et al.}\cite{vlugt:cpc2007154} They fit an effective pair-wise
328   Lennard-Jones form of potential parameters for the interaction between
329   Au and pseudo-atoms CH$_x$ and S based on a well-established and
330   widely-used effective potential of Hautman and Klein for the Au(111)
331   surface.\cite{hautman:4994}
332  
333 < Additional terms to represent thiolated alkenes and conjugated ligand
334 < moieties were parameterized as part of this work and are available in
335 < the supporting information.
333 > All additional terms to represent thiolated alkenes and conjugated
334 > ligand moieties were parameterized as part of this work and are
335 > available in the supporting information.
336  
337   %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
338   %               SIMULATION PROTOCOL
# Line 479 | Line 497 | conductance and is an important phenomenon to quantify
497   surface restructuring may have an impact on the interfacial thermal
498   conductance and is an important phenomenon to quantify.
499  
500 < Henz, \textit{et al.}\cite{Henz2007,Henz:2008qf} used the metal
500 > Henz, \textit{et al.}\cite{Henz:2008qf} used the metal
501   density as a function of radius to measure the degree of mixing
502   between the thiol sulfurs and surface gold atoms at the edge of a
503   nanoparticle. Although metal density is important, disruption of the

Diff Legend

Removed lines
+ Added lines
< Changed lines
> Changed lines