working version of simpleBuilder
add function isAtomInRigidBody into MoleculeStamp
BASS eradication project (part 3)
better error messages
Fixing required keyword annoyances
changed minimizer keywords
Shouldn't have been in CVS
Fix for thermodynamic integration of rigid bodies
These can be generated via lex and yacc at compile time
*** empty log message ***
fixing for machines that don't have lex and yacc
Makefiles don't belong in repository
Updated configure for new samples
Initial import of OOPSE-1.0 source tree