1 |
#define _FILE_OFFSET_BITS 64 |
2 |
#include <iostream> |
3 |
#include <math.h> |
4 |
|
5 |
#include <stdio.h> |
6 |
#include <stdlib.h> |
7 |
#include <string.h> |
8 |
#include <unistd.h> |
9 |
#include <sys/types.h> |
10 |
#include <sys/stat.h> |
11 |
|
12 |
#include "ReadWrite.hpp" |
13 |
#include "simError.h" |
14 |
#include "GenericData.hpp" |
15 |
|
16 |
#ifdef IS_MPI |
17 |
#include <mpi.h> |
18 |
#include "mpiSimulation.hpp" |
19 |
#define TAKE_THIS_TAG_CHAR 3134 |
20 |
#define TAKE_THIS_TAG_INT 3135 |
21 |
|
22 |
namespace initFile{ |
23 |
void nodeZeroError( void ); |
24 |
void anonymousNodeDie( void ); |
25 |
} |
26 |
|
27 |
using namespace initFile; |
28 |
|
29 |
#endif // is_mpi |
30 |
|
31 |
InitializeFromFile::InitializeFromFile( char *in_name ){ |
32 |
|
33 |
#ifdef IS_MPI |
34 |
if (worldRank == 0) { |
35 |
#endif |
36 |
|
37 |
c_in_file = fopen(in_name, "r"); |
38 |
if(c_in_file == NULL){ |
39 |
sprintf(painCave.errMsg, |
40 |
"Cannot open file: %s\n", in_name); |
41 |
painCave.isFatal = 1; |
42 |
simError(); |
43 |
} |
44 |
|
45 |
strcpy( c_in_name, in_name); |
46 |
#ifdef IS_MPI |
47 |
} |
48 |
else{ |
49 |
sprintf( c_in_name, "mpiNodeParser_%d", worldRank ); |
50 |
} |
51 |
|
52 |
strcpy( checkPointMsg, "Infile opened for reading successfully." ); |
53 |
MPIcheckPoint(); |
54 |
#endif |
55 |
return; |
56 |
} |
57 |
|
58 |
InitializeFromFile::~InitializeFromFile( ){ |
59 |
#ifdef IS_MPI |
60 |
if (worldRank == 0) { |
61 |
#endif |
62 |
int error; |
63 |
error = fclose( c_in_file ); |
64 |
if( error ){ |
65 |
sprintf( painCave.errMsg, |
66 |
"Error closing %s\n", c_in_name ); |
67 |
simError(); |
68 |
} |
69 |
#ifdef IS_MPI |
70 |
} |
71 |
strcpy( checkPointMsg, "Infile closed successfully." ); |
72 |
MPIcheckPoint(); |
73 |
#endif |
74 |
|
75 |
return; |
76 |
} |
77 |
|
78 |
|
79 |
void InitializeFromFile :: readInit( SimInfo* the_simnfo ){ |
80 |
|
81 |
int i, j; |
82 |
|
83 |
#ifdef IS_MPI |
84 |
int done, which_node, which_atom; // loop counter |
85 |
#endif //is_mpi |
86 |
|
87 |
const int BUFFERSIZE = 2000; // size of the read buffer |
88 |
int nTotObjs; // the number of atoms |
89 |
char read_buffer[BUFFERSIZE]; //the line buffer for reading |
90 |
|
91 |
char *eof_test; // ptr to see when we reach the end of the file |
92 |
char *parseErr; |
93 |
|
94 |
vector<StuntDouble*> integrableObjects; |
95 |
|
96 |
simnfo = the_simnfo; |
97 |
|
98 |
|
99 |
#ifndef IS_MPI |
100 |
eof_test = fgets(read_buffer, sizeof(read_buffer), c_in_file); |
101 |
if( eof_test == NULL ){ |
102 |
sprintf( painCave.errMsg, |
103 |
"InitializeFromFile error: error reading 1st line of \"%s\"\n", |
104 |
c_in_name ); |
105 |
painCave.isFatal = 1; |
106 |
simError(); |
107 |
} |
108 |
|
109 |
nTotObjs = atoi( read_buffer ); |
110 |
|
111 |
if( nTotObjs != simnfo->getTotIntegrableObjects() ){ |
112 |
sprintf( painCave.errMsg, |
113 |
"Initialize from File error. %s n_atoms, %d, " |
114 |
"does not match the BASS file's n_atoms, %d.\n", |
115 |
c_in_name, nTotObjs, simnfo->getTotIntegrableObjects()); |
116 |
painCave.isFatal = 1; |
117 |
simError(); |
118 |
} |
119 |
|
120 |
//read the box mat from the comment line |
121 |
|
122 |
eof_test = fgets(read_buffer, sizeof(read_buffer), c_in_file); |
123 |
if(eof_test == NULL){ |
124 |
sprintf( painCave.errMsg, |
125 |
"error in reading commment in %s\n", c_in_name); |
126 |
painCave.isFatal = 1; |
127 |
simError(); |
128 |
} |
129 |
|
130 |
parseErr = parseCommentLine( read_buffer, simnfo); |
131 |
if( parseErr != NULL ){ |
132 |
strcpy( painCave.errMsg, parseErr ); |
133 |
painCave.isFatal = 1; |
134 |
simError(); |
135 |
} |
136 |
|
137 |
//parse dump lines |
138 |
|
139 |
for( i=0; i < simnfo->n_mol; i++){ |
140 |
|
141 |
integrableObjects = (simnfo->molecules[i]).getIntegrableObjects(); |
142 |
|
143 |
for(j = 0; j < integrableObjects.size(); j++){ |
144 |
|
145 |
eof_test = fgets(read_buffer, sizeof(read_buffer), c_in_file); |
146 |
if(eof_test == NULL){ |
147 |
sprintf(painCave.errMsg, |
148 |
"error in reading file %s\n" |
149 |
"natoms = %d; index = %d\n" |
150 |
"error reading the line from the file.\n", |
151 |
c_in_name, nTotObjs, i ); |
152 |
painCave.isFatal = 1; |
153 |
simError(); |
154 |
} |
155 |
|
156 |
parseErr = parseDumpLine( read_buffer, integrableObjects[j]); |
157 |
if( parseErr != NULL ){ |
158 |
strcpy( painCave.errMsg, parseErr ); |
159 |
painCave.isFatal = 1; |
160 |
simError(); |
161 |
} |
162 |
} |
163 |
} |
164 |
|
165 |
// MPI Section of code.......... |
166 |
#else //IS_MPI |
167 |
|
168 |
// first thing first, suspend fatalities. |
169 |
painCave.isEventLoop = 1; |
170 |
|
171 |
int myStatus; // 1 = wakeup & success; 0 = error; -1 = AllDone |
172 |
int haveError; |
173 |
|
174 |
MPI_Status istatus; |
175 |
int *MolToProcMap = mpiSim->getMolToProcMap(); |
176 |
int localIndex; |
177 |
int nCurObj; |
178 |
int nItems; |
179 |
|
180 |
nTotObjs = simnfo->getTotIntegrableObjects(); |
181 |
haveError = 0; |
182 |
if (worldRank == 0) { |
183 |
|
184 |
eof_test = fgets(read_buffer, sizeof(read_buffer), c_in_file); |
185 |
if( eof_test == NULL ){ |
186 |
sprintf( painCave.errMsg, |
187 |
"Error reading 1st line of %s \n ",c_in_name); |
188 |
haveError = 1; |
189 |
simError(); |
190 |
} |
191 |
|
192 |
nItems = atoi( read_buffer ); |
193 |
|
194 |
// Check to see that the number of integrable objects in the intial configuration file is the |
195 |
// same as declared in simBass. |
196 |
|
197 |
if( nTotObjs != nItems){ |
198 |
sprintf( painCave.errMsg, |
199 |
"Initialize from File error. %s n_atoms, %d, " |
200 |
"does not match the BASS file's n_atoms, %d.\n", |
201 |
c_in_name, nTotObjs, simnfo->getTotIntegrableObjects()); |
202 |
haveError= 1; |
203 |
simError(); |
204 |
} |
205 |
|
206 |
//read the boxMat from the comment line |
207 |
|
208 |
eof_test = fgets(read_buffer, sizeof(read_buffer), c_in_file); |
209 |
if(eof_test == NULL){ |
210 |
sprintf( painCave.errMsg, |
211 |
"error in reading commment in %s\n", c_in_name); |
212 |
haveError = 1; |
213 |
simError(); |
214 |
} |
215 |
|
216 |
//Every single processor will parse the comment line by itself |
217 |
//By using this way, we might lose some efficiency, but if we want to add |
218 |
//more parameters into comment line, we only need to modify function |
219 |
//parseCommentLine |
220 |
|
221 |
MPI_Bcast(read_buffer, BUFFERSIZE, MPI_CHAR, 0, MPI_COMM_WORLD); |
222 |
|
223 |
|
224 |
parseErr = parseCommentLine( read_buffer, simnfo); |
225 |
|
226 |
if( parseErr != NULL ){ |
227 |
strcpy( painCave.errMsg, parseErr ); |
228 |
haveError = 1; |
229 |
simError(); |
230 |
} |
231 |
|
232 |
for (i=0 ; i < mpiSim->getNMolGlobal(); i++) { |
233 |
which_node = MolToProcMap[i]; |
234 |
if(which_node == 0){ |
235 |
//molecules belong to master node |
236 |
|
237 |
localIndex = mpiSim->getGlobalToLocalMol(i); |
238 |
|
239 |
if(localIndex == -1) { |
240 |
strcpy(painCave.errMsg, "Molecule not found on node 0!"); |
241 |
haveError = 1; |
242 |
simError(); |
243 |
} |
244 |
|
245 |
integrableObjects = (simnfo->molecules[localIndex]).getIntegrableObjects(); |
246 |
for(j=0; j < integrableObjects.size(); j++){ |
247 |
|
248 |
eof_test = fgets(read_buffer, sizeof(read_buffer), c_in_file); |
249 |
if(eof_test == NULL){ |
250 |
sprintf(painCave.errMsg, |
251 |
"error in reading file %s\n" |
252 |
"natoms = %d; index = %d\n" |
253 |
"error reading the line from the file.\n", |
254 |
c_in_name, nTotObjs, i ); |
255 |
haveError= 1; |
256 |
simError(); |
257 |
} |
258 |
|
259 |
if(haveError) nodeZeroError(); |
260 |
|
261 |
parseDumpLine(read_buffer, integrableObjects[j]); |
262 |
|
263 |
} |
264 |
|
265 |
|
266 |
} |
267 |
else{ |
268 |
//molecule belongs to slave nodes |
269 |
|
270 |
MPI_Recv(&nCurObj, 1, MPI_INT, which_node, |
271 |
TAKE_THIS_TAG_INT, MPI_COMM_WORLD, &istatus); |
272 |
|
273 |
for(j=0; j < nCurObj; j++){ |
274 |
|
275 |
eof_test = fgets(read_buffer, sizeof(read_buffer), c_in_file); |
276 |
if(eof_test == NULL){ |
277 |
sprintf(painCave.errMsg, |
278 |
"error in reading file %s\n" |
279 |
"natoms = %d; index = %d\n" |
280 |
"error reading the line from the file.\n", |
281 |
c_in_name, nTotObjs, i ); |
282 |
haveError= 1; |
283 |
simError(); |
284 |
} |
285 |
|
286 |
if(haveError) nodeZeroError(); |
287 |
|
288 |
MPI_Send(read_buffer, BUFFERSIZE, MPI_CHAR, which_node, |
289 |
TAKE_THIS_TAG_CHAR, MPI_COMM_WORLD); |
290 |
|
291 |
} |
292 |
|
293 |
} |
294 |
|
295 |
} |
296 |
|
297 |
} |
298 |
else{ |
299 |
//actions taken at slave nodes |
300 |
|
301 |
MPI_Bcast(read_buffer, BUFFERSIZE, MPI_CHAR, 0, MPI_COMM_WORLD); |
302 |
|
303 |
parseErr = parseCommentLine( read_buffer, simnfo); |
304 |
|
305 |
if( parseErr != NULL ){ |
306 |
strcpy( painCave.errMsg, parseErr ); |
307 |
haveError = 1; |
308 |
simError(); |
309 |
} |
310 |
|
311 |
for (i=0 ; i < mpiSim->getNMolGlobal(); i++) { |
312 |
which_node = MolToProcMap[i]; |
313 |
|
314 |
if(which_node == worldRank){ |
315 |
//molecule with global index i belongs to this processor |
316 |
|
317 |
localIndex = mpiSim->getGlobalToLocalMol(i); |
318 |
|
319 |
if(localIndex == -1) { |
320 |
sprintf(painCave.errMsg, "Molecule not found on node %d\n", worldRank); |
321 |
haveError = 1; |
322 |
simError(); |
323 |
} |
324 |
|
325 |
integrableObjects = (simnfo->molecules[localIndex]).getIntegrableObjects(); |
326 |
|
327 |
nCurObj = integrableObjects.size(); |
328 |
|
329 |
MPI_Send(&nCurObj, 1, MPI_INT, 0, |
330 |
TAKE_THIS_TAG_INT, MPI_COMM_WORLD); |
331 |
|
332 |
for(j = 0; j < integrableObjects.size(); j++){ |
333 |
|
334 |
MPI_Recv(read_buffer, BUFFERSIZE, MPI_CHAR, 0, |
335 |
TAKE_THIS_TAG_CHAR, MPI_COMM_WORLD, &istatus); |
336 |
|
337 |
parseErr = parseDumpLine(read_buffer, integrableObjects[j]); |
338 |
|
339 |
if( parseErr != NULL ){ |
340 |
strcpy( painCave.errMsg, parseErr ); |
341 |
simError(); |
342 |
} |
343 |
|
344 |
} |
345 |
|
346 |
} |
347 |
|
348 |
} |
349 |
|
350 |
} |
351 |
#endif |
352 |
} |
353 |
|
354 |
char* InitializeFromFile::parseDumpLine(char* readLine, StuntDouble* sd){ |
355 |
|
356 |
char *foo; // the pointer to the current string token |
357 |
|
358 |
double pos[3]; // position place holders |
359 |
double vel[3]; // velocity placeholders |
360 |
double q[4]; // the quaternions |
361 |
double ji[3]; // angular velocity placeholders; |
362 |
double qSqr, qLength; // needed to normalize the quaternion vector. |
363 |
|
364 |
|
365 |
// set the string tokenizer |
366 |
|
367 |
foo = strtok(readLine, " ,;\t"); |
368 |
|
369 |
// check the atom name to the current atom |
370 |
|
371 |
if( strcmp( foo, sd->getType() ) ){ |
372 |
sprintf( painCave.errMsg, |
373 |
"Initialize from file error. Does not" |
374 |
" match the BASS atom %s.\n", |
375 |
sd->getType() ); |
376 |
return strdup( painCave.errMsg ); |
377 |
} |
378 |
|
379 |
// get the positions |
380 |
|
381 |
foo = strtok(NULL, " ,;\t"); |
382 |
if(foo == NULL){ |
383 |
sprintf( painCave.errMsg, |
384 |
"error in reading postition x from %s\n", |
385 |
c_in_name); |
386 |
return strdup( painCave.errMsg ); |
387 |
} |
388 |
pos[0] = atof( foo ); |
389 |
|
390 |
foo = strtok(NULL, " ,;\t"); |
391 |
if(foo == NULL){ |
392 |
sprintf( painCave.errMsg, |
393 |
"error in reading postition y from %s\n", |
394 |
c_in_name); |
395 |
return strdup( painCave.errMsg ); |
396 |
} |
397 |
pos[1] = atof( foo ); |
398 |
|
399 |
foo = strtok(NULL, " ,;\t"); |
400 |
if(foo == NULL){ |
401 |
sprintf( painCave.errMsg, |
402 |
"error in reading postition z from %s\n", |
403 |
c_in_name); |
404 |
return strdup( painCave.errMsg ); |
405 |
} |
406 |
pos[2] = atof( foo ); |
407 |
|
408 |
|
409 |
// get the velocities |
410 |
|
411 |
foo = strtok(NULL, " ,;\t"); |
412 |
if(foo == NULL){ |
413 |
sprintf( painCave.errMsg, |
414 |
"error in reading velocity x from %s\n", |
415 |
c_in_name ); |
416 |
return strdup( painCave.errMsg ); |
417 |
} |
418 |
vel[0] = atof( foo ); |
419 |
|
420 |
foo = strtok(NULL, " ,;\t"); |
421 |
if(foo == NULL){ |
422 |
sprintf( painCave.errMsg, |
423 |
"error in reading velocity x from %s\n", |
424 |
c_in_name ); |
425 |
return strdup( painCave.errMsg ); |
426 |
} |
427 |
vel[1] = atof( foo ); |
428 |
|
429 |
foo = strtok(NULL, " ,;\t"); |
430 |
if(foo == NULL){ |
431 |
sprintf( painCave.errMsg, |
432 |
"error in reading velocity x from %s\n", |
433 |
c_in_name ); |
434 |
return strdup( painCave.errMsg ); |
435 |
} |
436 |
vel[2] = atof( foo ); |
437 |
|
438 |
|
439 |
// add the positions and velocities to the atom |
440 |
|
441 |
sd->setPos( pos ); |
442 |
sd->setVel( vel ); |
443 |
|
444 |
if (!sd->isDirectional()) |
445 |
return NULL; |
446 |
|
447 |
// get the quaternions |
448 |
|
449 |
if( sd->isDirectional() ){ |
450 |
|
451 |
foo = strtok(NULL, " ,;\t"); |
452 |
if(foo == NULL){ |
453 |
sprintf( painCave.errMsg, |
454 |
"error in reading velocity x from %s\n", |
455 |
c_in_name ); |
456 |
return strdup( painCave.errMsg ); |
457 |
} |
458 |
q[0] = atof( foo ); |
459 |
|
460 |
foo = strtok(NULL, " ,;\t"); |
461 |
if(foo == NULL){ |
462 |
sprintf( painCave.errMsg, |
463 |
"error in reading velocity x from %s\n", |
464 |
c_in_name ); |
465 |
return strdup( painCave.errMsg ); |
466 |
} |
467 |
q[1] = atof( foo ); |
468 |
|
469 |
foo = strtok(NULL, " ,;\t"); |
470 |
if(foo == NULL){ |
471 |
sprintf( painCave.errMsg, |
472 |
"error in reading velocity x from %s\n", |
473 |
c_in_name ); |
474 |
return strdup( painCave.errMsg ); |
475 |
} |
476 |
q[2] = atof( foo ); |
477 |
|
478 |
foo = strtok(NULL, " ,;\t"); |
479 |
if(foo == NULL){ |
480 |
sprintf( painCave.errMsg, |
481 |
"error in reading velocity x from %s\n", |
482 |
c_in_name ); |
483 |
return strdup( painCave.errMsg ); |
484 |
} |
485 |
q[3] = atof( foo ); |
486 |
|
487 |
// get the angular velocities |
488 |
|
489 |
foo = strtok(NULL, " ,;\t"); |
490 |
if(foo == NULL){ |
491 |
sprintf( painCave.errMsg, |
492 |
"error in reading velocity x from %s\n", |
493 |
c_in_name ); |
494 |
return strdup( painCave.errMsg ); |
495 |
} |
496 |
ji[0] = atof( foo ); |
497 |
|
498 |
foo = strtok(NULL, " ,;\t"); |
499 |
if(foo == NULL){ |
500 |
sprintf( painCave.errMsg, |
501 |
"error in reading velocity x from %s\n", |
502 |
c_in_name ); |
503 |
return strdup( painCave.errMsg ); |
504 |
} |
505 |
ji[1] = atof(foo ); |
506 |
|
507 |
foo = strtok(NULL, " ,;\t"); |
508 |
if(foo == NULL){ |
509 |
sprintf( painCave.errMsg, |
510 |
"error in reading velocity x from %s\n", |
511 |
c_in_name ); |
512 |
return strdup( painCave.errMsg ); |
513 |
} |
514 |
ji[2] = atof( foo ); |
515 |
|
516 |
|
517 |
// check that the quaternion vector is normalized |
518 |
|
519 |
qSqr = (q[0] * q[0]) + (q[1] * q[1]) + (q[2] * q[2]) + (q[3] * q[3]); |
520 |
|
521 |
if (fabs(qSqr) < 1e-6) { |
522 |
sprintf(painCave.errMsg, |
523 |
"initial quaternion error (q0^2 + q1^2 + q2^2 + q3^2 ~ 0).\n"); |
524 |
return strdup(painCave.errMsg); |
525 |
} |
526 |
|
527 |
qLength = sqrt( qSqr ); |
528 |
q[0] = q[0] / qLength; |
529 |
q[1] = q[1] / qLength; |
530 |
q[2] = q[2] / qLength; |
531 |
q[3] = q[3] / qLength; |
532 |
|
533 |
// add quaternion and angular velocities |
534 |
|
535 |
sd->setQ( q ); |
536 |
sd->setJ( ji ); |
537 |
} |
538 |
|
539 |
|
540 |
|
541 |
return NULL; |
542 |
} |
543 |
|
544 |
|
545 |
char* InitializeFromFile::parseCommentLine(char* readLine, SimInfo* entry_plug){ |
546 |
|
547 |
double currTime; |
548 |
double boxMat[9]; |
549 |
double theBoxMat3[3][3]; |
550 |
double chi; |
551 |
double integralOfChidt; |
552 |
double eta[9]; |
553 |
|
554 |
char *foo; // the pointer to the current string token |
555 |
|
556 |
// set the string tokenizer |
557 |
|
558 |
foo = strtok(readLine, " ,;\t"); |
559 |
// set the timeToken. |
560 |
|
561 |
if(foo == NULL){ |
562 |
sprintf( painCave.errMsg, |
563 |
"error in reading Time from %s\n", |
564 |
c_in_name ); |
565 |
return strdup( painCave.errMsg ); |
566 |
} |
567 |
|
568 |
currTime = atof( foo ); |
569 |
entry_plug->setTime( currTime ); |
570 |
|
571 |
//get H-Matrix |
572 |
|
573 |
for(int i = 0 ; i < 9; i++){ |
574 |
foo = strtok(NULL, " ,;\t"); |
575 |
if(foo == NULL){ |
576 |
sprintf( painCave.errMsg, |
577 |
"error in reading H[%d] from %s\n", i, c_in_name ); |
578 |
return strdup( painCave.errMsg ); |
579 |
} |
580 |
boxMat[i] = atof( foo ); |
581 |
} |
582 |
|
583 |
for(int i=0;i<3;i++) |
584 |
for(int j=0;j<3;j++) theBoxMat3[i][j] = boxMat[3*j+i]; |
585 |
|
586 |
//set H-Matrix |
587 |
entry_plug->setBoxM( theBoxMat3 ); |
588 |
|
589 |
//get chi and integralOfChidt, they should appear by pair |
590 |
|
591 |
if( entry_plug->useInitXSstate ){ |
592 |
foo = strtok(NULL, " ,;\t\n"); |
593 |
if(foo != NULL){ |
594 |
chi = atof(foo); |
595 |
|
596 |
foo = strtok(NULL, " ,;\t\n"); |
597 |
if(foo == NULL){ |
598 |
sprintf( painCave.errMsg, |
599 |
"chi and integralOfChidt should appear by pair in %s\n", c_in_name ); |
600 |
return strdup( painCave.errMsg ); |
601 |
} |
602 |
integralOfChidt = atof( foo ); |
603 |
|
604 |
//push chi and integralOfChidt into SimInfo::properties which can be |
605 |
//retrieved by integrator later |
606 |
DoubleData* chiValue = new DoubleData(); |
607 |
chiValue->setID(CHIVALUE_ID); |
608 |
chiValue->setData(chi); |
609 |
entry_plug->addProperty(chiValue); |
610 |
|
611 |
DoubleData* integralOfChidtValue = new DoubleData(); |
612 |
integralOfChidtValue->setID(INTEGRALOFCHIDT_ID); |
613 |
integralOfChidtValue->setData(integralOfChidt); |
614 |
entry_plug->addProperty(integralOfChidtValue); |
615 |
|
616 |
} |
617 |
else |
618 |
return NULL; |
619 |
|
620 |
//get eta |
621 |
foo = strtok(NULL, " ,;\t\n"); |
622 |
if(foo != NULL ){ |
623 |
|
624 |
for(int i = 0 ; i < 9; i++){ |
625 |
|
626 |
if(foo == NULL){ |
627 |
sprintf( painCave.errMsg, |
628 |
"error in reading eta[%d] from %s\n", i, c_in_name ); |
629 |
return strdup( painCave.errMsg ); |
630 |
} |
631 |
eta[i] = atof( foo ); |
632 |
foo = strtok(NULL, " ,;\t\n"); |
633 |
} |
634 |
} |
635 |
else |
636 |
return NULL; |
637 |
|
638 |
//push eta into SimInfo::properties which can be |
639 |
//retrieved by integrator later |
640 |
|
641 |
DoubleArrayData* etaValue = new DoubleArrayData(); |
642 |
etaValue->setID(ETAVALUE_ID); |
643 |
etaValue->setData(eta, 9); |
644 |
entry_plug->addProperty(etaValue); |
645 |
} |
646 |
|
647 |
return NULL; |
648 |
} |
649 |
|
650 |
#ifdef IS_MPI |
651 |
|
652 |
// a couple of functions to let us escape the read loop |
653 |
|
654 |
void initFile::nodeZeroError( void ){ |
655 |
int j, myStatus; |
656 |
|
657 |
myStatus = 0; |
658 |
for (j = 0; j < mpiSim->getNProcessors(); j++) { |
659 |
MPI_Send( &myStatus, 1, MPI_INT, j, |
660 |
TAKE_THIS_TAG_INT, MPI_COMM_WORLD); |
661 |
} |
662 |
|
663 |
|
664 |
MPI_Finalize(); |
665 |
exit (0); |
666 |
|
667 |
} |
668 |
|
669 |
void initFile::anonymousNodeDie( void ){ |
670 |
|
671 |
MPI_Finalize(); |
672 |
exit (0); |
673 |
} |
674 |
|
675 |
#endif //is_mpi |