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Comparing trunk/OOPSE-2.0/ChangeLog (file contents):
Revision 2199 by gezelter, Thu Apr 14 21:41:56 2005 UTC vs.
Revision 2229 by chrisfen, Tue May 17 22:35:01 2005 UTC

# Line 1 | Line 1
1 + 2005-05-16 23:20  chuckv
2 +
3 +        * src/types/: DirectionalAtomType.cpp, DirectionalAtomType.hpp:
4 +        Fixed merge issues between Kyle and Chris so OOPSE will actually
5 +        build.
6 +
7 + 2005-05-16 22:46  kdaily
8 +
9 +        * src/io/: GayBerneAtomTypesSectionParser.cpp,
10 +        GayBerneAtomTypesSectionParser.hpp, Makefile: help
11 +
12 + 2005-05-16 21:08  kdaily
13 +
14 +        * forceFields/DUFF2.frc, src/UseTheForce/doForces.F90,
15 +        src/UseTheForce/DarkSide/gb.F90, src/io/Makefile,
16 +        src/types/DirectionalAtomType.cpp,
17 +        src/types/DirectionalAtomType.hpp: added gb
18 +
19 + 2005-05-13 15:36  chrisfen
20 +
21 +        * forceFields/DUFF2.frc: Better tap
22 +
23 + 2005-05-12 14:43  chrisfen
24 +
25 +        * forceFields/DUFF2.frc, samples/water/dimer/ssd.in,
26 +        samples/water/dimer/ssd.md, src/UseTheForce/DarkSide/sticky.F90,
27 +        src/applications/dump2Xyz/Dump2XYZ.cpp,
28 +        src/visitors/AtomVisitor.hpp: Couple of changes for TAP water.
29 +        Need to parametrize.
30 +
31 + 2005-05-11 18:15  chuckv
32 +
33 +        * src/: io/ShapeAtomTypesSectionParser.cpp,
34 +        math/RealSphericalHarmonic.cpp, utils/CaseConversion.hpp: Fixed
35 +        build issues under ifc7.
36 +
37 + 2005-05-09 17:07  chuckv
38 +
39 +        * src/applications/nanoRodBuilder/Geometry.hpp: More geometry
40 +        builder changes.
41 +
42 + 2005-05-05 10:06  chrisfen
43 +
44 +        * forceFields/DUFF2.frc, samples/water/ssde/water.md: Changed SHED
45 +        to TAP
46 +
47 + 2005-05-05 09:47  chrisfen
48 +
49 +        * forceFields/DUFF2.frc, samples/water/ssde/ssde.md,
50 +        samples/water/ssde/water.md, src/UseTheForce/DUFF.cpp,
51 +        src/UseTheForce/doForces.F90, src/UseTheForce/DarkSide/Makefile,
52 +        src/UseTheForce/DarkSide/atype.F90,
53 +        src/UseTheForce/DarkSide/atype_interface.F90,
54 +        src/UseTheForce/DarkSide/simulation.F90,
55 +        src/UseTheForce/DarkSide/sticky.F90, src/brains/SimInfo.cpp,
56 +        src/brains/fSimulation.h, src/io/Makefile,
57 +        src/io/StickyAtomTypesSectionParser.cpp,
58 +        src/io/StickyPowerAtomTypesSectionParser.cpp,
59 +        src/io/StickyPowerAtomTypesSectionParser.hpp,
60 +        src/types/AtomType.cpp, src/types/AtomType.hpp,
61 +        src/types/AtomTypeProperties.h, src/types/DirectionalAtomType.cpp,
62 +        src/types/DirectionalAtomType.hpp: OOPSE setup for TAP water.  It's
63 +        not parametrized, but OOPSE will now let me run it...
64 +
65 + 2005-05-03 17:55  chuckv
66 +
67 +        * src/applications/nanoRodBuilder/: Geometry.cpp, Geometry.hpp,
68 +        GeometryCreator.hpp, GeometryFactory.cpp, GeometryFactory.hpp:
69 +        Adding support for generic geometry to nanorodbuilder.
70 +
71 + 2005-05-03 12:55  chuckv
72 +
73 +        * src/applications/nanoRodBuilder/: GeometryBuilder.cpp,
74 +        nanorodBuilder.cpp, nanorodBuilder.ggo, nanorodBuilderCmd.c,
75 +        nanorodBuilderCmd.h: More changes to nanoRodBuilder....
76 +
77 + 2005-04-29 14:16  gezelter
78 +
79 +        * make/Makefile.in: [no log message]
80 +
81 + 2005-04-29 11:26  chrisfen
82 +
83 +        * forceFields/DUFF2.frc, samples/water/spce/water.md,
84 +        samples/water/ssd/water.md, samples/water/ssd-ion/ssdCl.md,
85 +        samples/water/ssd-ion/water.md, samples/water/ssde/water.md,
86 +        samples/water/ssdrf/water.md, samples/water/tip3p_ice/water.md,
87 +        samples/water/tip4p/water.md: Added TIP4P-Ew
88 +
89 + 2005-04-27 19:24  chuckv
90 +
91 +        * src/applications/nanoRodBuilder/: GeometryBuilder.cpp,
92 +        GeometryBuilder.hpp, nanorodBuilder.cpp, nanorodBuilder.ggo,
93 +        nanorodBuilderCmd.c, nanorodBuilderCmd.h: Fixed issues with
94 +        nanoRodBuilder....
95 +
96 + 2005-04-27 15:13  chrisfen
97 +
98 +        * samples/shape/Shapes.frc, samples/shape/linear.shape,
99 +        src/UseTheForce/DarkSide/atype.F90,
100 +        src/UseTheForce/DarkSide/shapes.F90,
101 +        src/UseTheForce/DarkSide/shapes_interface.F90,
102 +        src/types/AtomType.cpp, src/types/ShapeAtomType.cpp: Got rid of
103 +        write statements and am closer to a working shapes
104 +
105 + 2005-04-22 16:57  chuckv
106 +
107 +        * src/utils/Predicate.hpp: Fixed gcc4 bug...
108 +
109 + 2005-04-22 16:52  tim
110 +
111 +        * src/utils/: CaseConversion.hpp, Predicate.hpp, Trim.cpp,
112 +        Trim.hpp: adding CharClassificationFunctor to fix the locale
113 +        problem  of c++
114 +
115 + 2005-04-21 09:12  chrisfen
116 +
117 +        * samples/shape/Shapes.frc, samples/shape/linear.in,
118 +        samples/shape/linear.md, src/UseTheForce/ForceField.hpp,
119 +        src/UseTheForce/ForceFieldFactory.hpp, src/UseTheForce/Makefile,
120 +        src/UseTheForce/SHAPES_FF.cpp, src/UseTheForce/SHAPES_FF.hpp,
121 +        src/UseTheForce/doForces.F90, src/UseTheForce/DarkSide/atype.F90,
122 +        src/UseTheForce/DarkSide/shapes.F90,
123 +        src/UseTheForce/DarkSide/shapes_interface.F90,
124 +        src/UseTheForce/DarkSide/shapes_interface.h,
125 +        src/brains/Register.cpp, src/brains/SimCreator.cpp,
126 +        src/io/Makefile, src/io/SectionParser.cpp,
127 +        src/io/SectionParser.hpp, src/io/SectionParserManager.cpp,
128 +        src/io/ShapeAtomTypesSectionParser.cpp,
129 +        src/io/ShapeAtomTypesSectionParser.hpp, src/math/Makefile,
130 +        src/types/AtomType.cpp, src/types/ShapeAtomType.cpp,
131 +        src/types/ShapeAtomType.hpp: Shapes is limping along with a array
132 +        bounds overwrite (I think...). At least the parser loads the
133 +        forcefield fine...
134 +
135 + 2005-04-18 10:44  chrisfen
136 +
137 +        * src/UseTheForce/Shapes_FF.cpp: axed because file causes havoc on
138 +        Mac (capitalization confusion of filenames)
139 +
140 + 2005-04-17 22:50  chrisfen
141 +
142 +        * src/: UseTheForce/SHAPES_FF.cpp, UseTheForce/SHAPES_FF.hpp,
143 +        UseTheForce/Shapes_FF.cpp,
144 +        io/DirectionalAtomTypesSectionParser.cpp,
145 +        io/ShapeAtomTypesSectionParser.cpp,
146 +        io/ShapeAtomTypesSectionParser.hpp: Working on the shapes parser...
147 +
148 + 2005-04-15 17:43  gezelter
149 +
150 +        * README: gmake in case people forget
151 +
152 + 2005-04-15 17:40  gezelter
153 +
154 +        * src/applications/oopse/oopse.cpp: fixed the spacing on the
155 +        banner.  Vanity.
156 +
157 + 2005-04-15 17:22  gezelter
158 +
159 +        * src/: config.h.in, applications/oopse/oopse.cpp: Version string
160 +        in banner (and version numbers in config.h)
161 +
162 + 2005-04-15 17:22  gezelter
163 +
164 +        * ChangeLog, LICENSE, README: Documentation changes
165 +
166 + 2005-04-15 17:03  gezelter
167 +
168 +        * src/: UseTheForce/DUFF.cpp, UseTheForce/DUFF.hpp,
169 +        UseTheForce/EAM_FF.cpp, UseTheForce/EAM_FF.hpp,
170 +        UseTheForce/ForceField.cpp, UseTheForce/ForceField.hpp,
171 +        UseTheForce/ForceFieldCreator.hpp,
172 +        UseTheForce/ForceFieldFactory.cpp,
173 +        UseTheForce/ForceFieldFactory.hpp, UseTheForce/Shapes_FF.cpp,
174 +        UseTheForce/doForces.F90, UseTheForce/doForces_interface.F90,
175 +        UseTheForce/doForces_interface.h, UseTheForce/mpiComponentPlan.h,
176 +        UseTheForce/notifyCutoffs.F90,
177 +        UseTheForce/notifyCutoffs_interface.F90,
178 +        UseTheForce/notifyCutoffs_interface.h, UseTheForce/DarkSide/LJ.F90,
179 +        UseTheForce/DarkSide/atype.F90,
180 +        UseTheForce/DarkSide/atype_interface.F90,
181 +        UseTheForce/DarkSide/eam.F90,
182 +        UseTheForce/DarkSide/eam_interface.F90,
183 +        UseTheForce/DarkSide/eam_interface.h,
184 +        UseTheForce/DarkSide/electrostatic.F90,
185 +        UseTheForce/DarkSide/electrostatic_interface.F90,
186 +        UseTheForce/DarkSide/electrostatic_interface.h,
187 +        UseTheForce/DarkSide/force_globals.F90,
188 +        UseTheForce/DarkSide/gb.F90, UseTheForce/DarkSide/gb_interface.h,
189 +        UseTheForce/DarkSide/lj_interface.F90,
190 +        UseTheForce/DarkSide/lj_interface.h,
191 +        UseTheForce/DarkSide/neighborLists.F90,
192 +        UseTheForce/DarkSide/reactionField.F90,
193 +        UseTheForce/DarkSide/shapes.F90,
194 +        UseTheForce/DarkSide/shapes_interface.F90,
195 +        UseTheForce/DarkSide/shapes_interface.h,
196 +        UseTheForce/DarkSide/simParallel.F90,
197 +        UseTheForce/DarkSide/simParallel_interface.F90,
198 +        UseTheForce/DarkSide/simParallel_interface.h,
199 +        UseTheForce/DarkSide/simulation.F90,
200 +        UseTheForce/DarkSide/simulation_interface.F90,
201 +        UseTheForce/DarkSide/simulation_interface.h,
202 +        UseTheForce/DarkSide/sticky.F90,
203 +        UseTheForce/DarkSide/sticky_interface.F90,
204 +        UseTheForce/DarkSide/sticky_interface.h,
205 +        UseTheForce/DarkSide/switcheroo.F90,
206 +        applications/dump2Xyz/Dump2XYZ.cpp,
207 +        applications/dump2Xyz/Dump2XYZCmd.c,
208 +        applications/dump2Xyz/Dump2XYZCmd.h,
209 +        applications/dynamicProps/CrossTimeCorrFunc.cpp,
210 +        applications/dynamicProps/CrossTimeCorrFunc.hpp,
211 +        applications/dynamicProps/DipoleCorrFunc.cpp,
212 +        applications/dynamicProps/DipoleCorrFunc.hpp,
213 +        applications/dynamicProps/DynamicProps.cpp,
214 +        applications/dynamicProps/DynamicPropsCmd.c,
215 +        applications/dynamicProps/DynamicPropsCmd.h,
216 +        applications/dynamicProps/FrameTimeCorrFunc.hpp,
217 +        applications/dynamicProps/ParticleTimeCorrFunc.cpp,
218 +        applications/dynamicProps/ParticleTimeCorrFunc.hpp,
219 +        applications/dynamicProps/RCorrFunc.cpp,
220 +        applications/dynamicProps/RCorrFunc.hpp,
221 +        applications/dynamicProps/TimeCorrFunc.cpp,
222 +        applications/dynamicProps/TimeCorrFunc.hpp,
223 +        applications/dynamicProps/VCorrFunc.cpp,
224 +        applications/dynamicProps/VCorrFunc.hpp,
225 +        applications/nanoRodBuilder/GeometryBuilder.cpp,
226 +        applications/nanoRodBuilder/GeometryBuilder.hpp,
227 +        applications/nanoRodBuilder/nanorodBuilder.cpp,
228 +        applications/nanoRodBuilder/nanorodBuilderCmd.c,
229 +        applications/nanoRodBuilder/nanorodBuilderCmd.h,
230 +        applications/oopse/oopse.cpp,
231 +        applications/simpleBuilder/simpleBuilder.cpp,
232 +        applications/simpleBuilder/simpleBuilderCmd.c,
233 +        applications/simpleBuilder/simpleBuilderCmd.h,
234 +        applications/staticProps/GofAngle2.cpp,
235 +        applications/staticProps/GofAngle2.hpp,
236 +        applications/staticProps/GofR.cpp,
237 +        applications/staticProps/GofR.hpp,
238 +        applications/staticProps/GofRAngle.cpp,
239 +        applications/staticProps/GofRAngle.hpp,
240 +        applications/staticProps/GofXyz.cpp,
241 +        applications/staticProps/GofXyz.hpp,
242 +        applications/staticProps/RadialDistrFunc.cpp,
243 +        applications/staticProps/RadialDistrFunc.hpp,
244 +        applications/staticProps/StaticProps.cpp,
245 +        applications/staticProps/StaticPropsCmd.c,
246 +        applications/staticProps/StaticPropsCmd.h,
247 +        brains/BlockSnapshotManager.cpp, brains/BlockSnapshotManager.hpp,
248 +        brains/DataStorage.cpp, brains/DataStorage.hpp, brains/Exclude.cpp,
249 +        brains/Exclude.hpp, brains/ForceManager.cpp,
250 +        brains/ForceManager.hpp, brains/MoleculeCreator.cpp,
251 +        brains/MoleculeCreator.hpp, brains/Register.cpp,
252 +        brains/Register.hpp, brains/SimCreator.hpp, brains/SimInfo.cpp,
253 +        brains/SimInfo.hpp, brains/SimSnapshotManager.cpp,
254 +        brains/SimSnapshotManager.hpp, brains/Snapshot.cpp,
255 +        brains/Snapshot.hpp, brains/SnapshotManager.hpp, brains/Stats.cpp,
256 +        brains/Stats.hpp, brains/Thermo.cpp, brains/Thermo.hpp,
257 +        brains/fSimulation.h, constraints/ConstraintElem.hpp,
258 +        constraints/ConstraintPair.hpp, constraints/Rattle.cpp,
259 +        constraints/Rattle.hpp, constraints/ZconsStruct.hpp,
260 +        constraints/ZconstraintForceManager.cpp,
261 +        constraints/ZconstraintForceManager.hpp, integrators/DLM.cpp,
262 +        integrators/DLM.hpp, integrators/Integrator.cpp,
263 +        integrators/Integrator.hpp, integrators/IntegratorCreator.hpp,
264 +        integrators/IntegratorFactory.cpp,
265 +        integrators/IntegratorFactory.hpp, integrators/NPT.cpp,
266 +        integrators/NPT.hpp, integrators/NPTf.cpp, integrators/NPTf.hpp,
267 +        integrators/NPTi.cpp, integrators/NPTi.hpp, integrators/NPTxyz.cpp,
268 +        integrators/NPTxyz.hpp, integrators/NVE.cpp, integrators/NVE.hpp,
269 +        integrators/NVT.cpp, integrators/NVT.hpp,
270 +        integrators/RotationAlgorithm.hpp, integrators/Velocitizer.cpp,
271 +        integrators/Velocitizer.hpp,
272 +        integrators/VelocityVerletIntegrator.cpp,
273 +        integrators/VelocityVerletIntegrator.hpp,
274 +        io/AtomTypesSectionParser.cpp, io/AtomTypesSectionParser.hpp,
275 +        io/BASS_interface.cpp, io/BASS_interface.h, io/BASS_parse.c,
276 +        io/BASS_parse.h, io/BendTypesSectionParser.cpp,
277 +        io/BendTypesSectionParser.hpp, io/BondTypesSectionParser.cpp,
278 +        io/BondTypesSectionParser.hpp, io/ChargeAtomTypesSectionParser.cpp,
279 +        io/ChargeAtomTypesSectionParser.hpp,
280 +        io/DirectionalAtomTypesSectionParser.cpp,
281 +        io/DirectionalAtomTypesSectionParser.hpp, io/DumpReader.cpp,
282 +        io/DumpReader.hpp, io/DumpWriter.cpp, io/DumpWriter.hpp,
283 +        io/EAMAtomTypesSectionParser.cpp, io/EAMAtomTypesSectionParser.hpp,
284 +        io/Globals.cpp, io/Globals.hpp,
285 +        io/LennardJonesAtomTypesSectionParser.cpp,
286 +        io/LennardJonesAtomTypesSectionParser.hpp, io/LinkedAssign.cpp,
287 +        io/LinkedAssign.hpp, io/MultipoleAtomTypesSectionParser.cpp,
288 +        io/MultipoleAtomTypesSectionParser.hpp, io/RestReader.cpp,
289 +        io/RestReader.hpp, io/RestWriter.cpp, io/RestWriter.hpp,
290 +        io/SectionParser.cpp, io/SectionParser.hpp,
291 +        io/SectionParserManager.cpp, io/SectionParserManager.hpp,
292 +        io/StatWriter.cpp, io/StatWriter.hpp,
293 +        io/StickyAtomTypesSectionParser.cpp,
294 +        io/StickyAtomTypesSectionParser.hpp,
295 +        io/TorsionTypesSectionParser.cpp, io/TorsionTypesSectionParser.hpp,
296 +        io/ZConsReader.cpp, io/ZConsReader.hpp, io/ZConsWriter.cpp,
297 +        io/ZConsWriter.hpp, io/basic_ifstrstream.hpp, io/basic_teebuf.hpp,
298 +        io/interface.c, io/make_nodes.c, io/make_nodes.h, io/mpiBASS.c,
299 +        io/mpiBASS.h, io/node_list.h, io/parse_interface.h, io/parse_me.h,
300 +        io/parse_tree.c, io/parse_tree.h, lattice/CubicLattice.cpp,
301 +        lattice/CubicLattice.hpp, lattice/FCCLattice.cpp,
302 +        lattice/FCCLattice.hpp, lattice/Lattice.cpp, lattice/Lattice.hpp,
303 +        lattice/LatticeCreator.hpp, lattice/LatticeFactory.cpp,
304 +        lattice/LatticeFactory.hpp, math/ChebyshevPolynomials.cpp,
305 +        math/ChebyshevPolynomials.hpp, math/MatVec3.c, math/MatVec3.h,
306 +        math/MersenneTwister.hpp, math/ParallelRandNumGen.cpp,
307 +        math/ParallelRandNumGen.hpp, math/Polynomial.hpp,
308 +        math/Quaternion.hpp, math/RandNumGen.hpp,
309 +        math/RealSphericalHarmonic.cpp, math/RealSphericalHarmonic.hpp,
310 +        math/RectMatrix.hpp, math/SeqRandNumGen.cpp,
311 +        math/SeqRandNumGen.hpp, math/SquareMatrix.hpp,
312 +        math/SquareMatrix3.hpp, math/Vector.hpp, math/Vector3.hpp,
313 +        minimizers/CGFamilyMinimizer.cpp, minimizers/CGFamilyMinimizer.hpp,
314 +        minimizers/Minimizer.cpp, minimizers/Minimizer.hpp,
315 +        minimizers/MinimizerCreator.hpp, minimizers/MinimizerFactory.cpp,
316 +        minimizers/MinimizerFactory.hpp,
317 +        minimizers/MinimizerParameterSet.cpp,
318 +        minimizers/MinimizerParameterSet.hpp, minimizers/PRCG.cpp,
319 +        minimizers/PRCG.hpp, minimizers/SDMinimizer.cpp,
320 +        minimizers/SDMinimizer.hpp, primitives/Atom.cpp,
321 +        primitives/Atom.hpp, primitives/Bend.cpp, primitives/Bend.hpp,
322 +        primitives/Bond.hpp, primitives/CutoffGroup.hpp,
323 +        primitives/DirectionalAtom.cpp, primitives/DirectionalAtom.hpp,
324 +        primitives/GhostBend.cpp, primitives/GhostBend.hpp,
325 +        primitives/GhostTorsion.cpp, primitives/GhostTorsion.hpp,
326 +        primitives/Molecule.cpp, primitives/Molecule.hpp,
327 +        primitives/RigidBody.cpp, primitives/RigidBody.hpp,
328 +        primitives/StuntDouble.cpp, primitives/StuntDouble.hpp,
329 +        primitives/Torsion.cpp, primitives/Torsion.hpp,
330 +        primitives/UreyBradleyBend.cpp, primitives/UreyBradleyBend.hpp,
331 +        profiling/mdProfile.cpp, profiling/mdProfile.hpp,
332 +        profiling/timing.F90, restraints/Restraints.cpp,
333 +        restraints/Restraints.hpp,
334 +        restraints/ThermoIntegrationForceManager.cpp,
335 +        restraints/ThermoIntegrationForceManager.hpp,
336 +        selection/DistanceFinder.cpp, selection/DistanceFinder.hpp,
337 +        selection/IndexFinder.cpp, selection/IndexFinder.hpp,
338 +        selection/NameFinder.cpp, selection/NameFinder.hpp,
339 +        selection/SelectionCompiler.cpp, selection/SelectionCompiler.hpp,
340 +        selection/SelectionEvaluator.cpp, selection/SelectionEvaluator.hpp,
341 +        selection/SelectionManager.cpp, selection/SelectionManager.hpp,
342 +        selection/Token.cpp, selection/Token.hpp, selection/TokenMap.cpp,
343 +        selection/TokenMap.hpp, types/AtomStamp.cpp, types/AtomStamp.hpp,
344 +        types/AtomType.cpp, types/AtomType.hpp, types/AtomTypeProperties.h,
345 +        types/BendStamp.cpp, types/BendStamp.hpp, types/BendType.hpp,
346 +        types/BondStamp.cpp, types/BondStamp.hpp, types/BondType.hpp,
347 +        types/CharmmTorsionType.cpp, types/CharmmTorsionType.hpp,
348 +        types/Component.cpp, types/Component.hpp, types/CubicBendType.hpp,
349 +        types/CubicBondType.hpp, types/CubicTorsionType.hpp,
350 +        types/CutoffGroupStamp.cpp, types/CutoffGroupStamp.hpp,
351 +        types/DirectionalAtomType.hpp, types/FixedBondType.hpp,
352 +        types/HarmonicBendType.hpp, types/HarmonicBondType.hpp,
353 +        types/MakeStamps.cpp, types/MakeStamps.hpp,
354 +        types/MoleculeStamp.cpp, types/MoleculeStamp.hpp,
355 +        types/MorseBondType.hpp, types/OplsTorsionType.hpp,
356 +        types/PolynomialBendType.hpp, types/PolynomialBondType.hpp,
357 +        types/PolynomialTorsionType.hpp, types/QuarticBendType.hpp,
358 +        types/QuarticBondType.hpp, types/QuarticTorsionType.hpp,
359 +        types/RigidBodyStamp.cpp, types/RigidBodyStamp.hpp,
360 +        types/ShapeAtomType.cpp, types/ShapeAtomType.hpp,
361 +        types/TorsionStamp.cpp, types/TorsionStamp.hpp,
362 +        types/TorsionType.hpp, types/UreyBradleyBendType.hpp,
363 +        types/ZconStamp.cpp, types/ZconStamp.hpp, utils/Algorithm.hpp,
364 +        utils/BitSet.cpp, utils/BitSet.hpp, utils/GenericData.hpp,
365 +        utils/GenericFactory.hpp, utils/LocalIndexManager.hpp,
366 +        utils/MemoryUtils.hpp, utils/MoLocator.cpp, utils/MoLocator.hpp,
367 +        utils/NumericConstant.hpp, utils/OOPSEConstant.hpp,
368 +        utils/PropertyMap.cpp, utils/PropertyMap.hpp,
369 +        utils/StringTokenizer.cpp, utils/StringTokenizer.hpp,
370 +        utils/StringUtils.hpp, utils/Trim.cpp, utils/Trim.hpp,
371 +        utils/Tuple.hpp, utils/TupleMatcher.hpp, utils/TypeContainer.hpp,
372 +        utils/TypeInfo.hpp, utils/Utility.cpp, utils/Utility.hpp,
373 +        utils/any.hpp, utils/definitions.F90, utils/fError.c,
374 +        utils/getopt.c, utils/getopt1.c, utils/gnugetopt.h,
375 +        utils/next_combination.hpp, utils/oopseMPI.F90, utils/physmem.h,
376 +        utils/residentMem.h, utils/simError.c, utils/simError.h,
377 +        utils/status.F90, utils/vector_class.F90, utils/wildcards.hpp,
378 +        visitors/AtomData.hpp, visitors/AtomVisitor.cpp,
379 +        visitors/AtomVisitor.hpp, visitors/BaseVisitor.hpp,
380 +        visitors/CompositeVisitor.cpp, visitors/CompositeVisitor.hpp,
381 +        visitors/LipidTransVisitor.cpp, visitors/LipidTransVisitor.hpp,
382 +        visitors/OtherVisitor.cpp, visitors/OtherVisitor.hpp,
383 +        visitors/RigidBodyVisitor.cpp, visitors/RigidBodyVisitor.hpp,
384 +        visitors/ZconsVisitor.cpp, visitors/ZconsVisitor.hpp: xemacs has
385 +        been drafted to perform our indentation services
386 +
387 + 2005-04-15 17:03  gezelter
388 +
389 +        * configure, ac-tools/configure.in: Jedi mind-trick warning
390 +        messages have been added to make users ignore CGAL.
391 +
392 + 2005-04-15 13:41  tim
393 +
394 +        * make/Makefile.in: fix make install
395 +
396 + 2005-04-15 13:41  tim
397 +
398 +        * samples/: dipole/Makefile, shape/Makefile, water/dimer/Makefile:
399 +        add  Makefile of samples
400 +
401 + 2005-04-15 13:33  tim
402 +
403 +        * samples/: lipid/Makefile, water/dimer/Makefile,
404 +        water/ssd-ion/Makefile, water/ssdrf/Makefile: some samples are not
405 +        installed correctly
406 +
407 + 2005-04-14 16:41  gezelter
408 +
409 +        * ChangeLog, configure, ac-tools/aclocal.m4, ac-tools/configure.in,
410 +        make/Makefile.in, scripts/cvs2cl, scripts/cvs2cl.pl,
411 +        scripts/filepp, scripts/filepp.in: configure now searches for perl
412 +        to use with filepp
413 +
414   2005-04-14 16:20  gezelter
415  
416          * src/utils/MoLocator.cpp: Fixed a bug in RigidBodyStamp section of

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