1 |
+ |
2005-09-18 15:45 chrisfen |
2 |
+ |
|
3 |
+ |
* ChangeLog, samples/water/ssdrf/ssdrf.md, |
4 |
+ |
src/UseTheForce/doForces.F90, |
5 |
+ |
src/UseTheForce/doForces_interface.F90, |
6 |
+ |
src/UseTheForce/doForces_interface.h, |
7 |
+ |
src/UseTheForce/DarkSide/electrostatic.F90, |
8 |
+ |
src/UseTheForce/DarkSide/electrostatic_interface.h, |
9 |
+ |
src/brains/SimInfo.cpp: reaction field seems to work now, still |
10 |
+ |
need to do some testing... |
11 |
+ |
|
12 |
+ |
2005-09-16 18:04 chuckv |
13 |
+ |
|
14 |
+ |
* src/io/: Globals.cpp, Globals.hpp: Added keywords for compressed |
15 |
+ |
dump files. |
16 |
+ |
|
17 |
+ |
2005-09-16 16:07 chrisfen |
18 |
+ |
|
19 |
+ |
* src/: UseTheForce/doForces_interface.F90, |
20 |
+ |
UseTheForce/doForces_interface.h, brains/SimInfo.cpp: xlf found a |
21 |
+ |
bug that ifc missed... |
22 |
+ |
|
23 |
+ |
2005-09-16 15:36 chrisfen |
24 |
+ |
|
25 |
+ |
* src/UseTheForce/: doForces.F90, DarkSide/electrostatic.F90: |
26 |
+ |
fixing some summation method issues |
27 |
+ |
|
28 |
+ |
2005-09-16 14:35 chrisfen |
29 |
+ |
|
30 |
+ |
* src/brains/SimInfo.cpp: fixed a capitalization error |
31 |
+ |
|
32 |
+ |
2005-09-16 14:34 chrisfen |
33 |
+ |
|
34 |
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* src/UseTheForce/: fElectrostaticSummationMethod.h, |
35 |
+ |
DarkSide/fElectrostaticSummationMethod.h: moved a header file |
36 |
+ |
around |
37 |
+ |
|
38 |
+ |
2005-09-16 14:00 chrisfen |
39 |
+ |
|
40 |
+ |
* src/: UseTheForce/DarkSide/electrostatic_interface.F90, |
41 |
+ |
brains/SimInfo.cpp, brains/SimInfo.hpp: it builds now, but there |
42 |
+ |
are known issues - particularly with reaction field... |
43 |
+ |
|
44 |
+ |
2005-09-16 11:07 chrisfen |
45 |
+ |
|
46 |
+ |
* src/: UseTheForce/DarkSide/electrostatic.F90, brains/SimInfo.cpp, |
47 |
+ |
io/Globals.cpp, io/Globals.hpp: some fixes but even more breaking |
48 |
+ |
(cutting out the old way to do reaction field) |
49 |
+ |
|
50 |
+ |
2005-09-15 17:05 gezelter |
51 |
+ |
|
52 |
+ |
* src/UseTheForce/: doForces.F90, fCoulombicCorrection.h, |
53 |
+ |
fElectrostaticSummationMethod.h, DarkSide/electrostatic.F90, |
54 |
+ |
DarkSide/electrostatic_interface.F90, |
55 |
+ |
DarkSide/electrostatic_interface.h: Working on adding WOLF |
56 |
+ |
|
57 |
+ |
2005-09-15 14:17 tim |
58 |
+ |
|
59 |
+ |
* src/io/DumpReader.cpp: Fix a bug in DumpReader in case readFrame |
60 |
+ |
is called without calling getNFrames |
61 |
+ |
|
62 |
+ |
2005-09-15 08:47 chrisfen |
63 |
+ |
|
64 |
+ |
* src/UseTheForce/fCoulombicCorrection.h: forgot to add a header |
65 |
+ |
|
66 |
+ |
2005-09-14 21:48 chuckv |
67 |
+ |
|
68 |
+ |
* src/UseTheForce/doForces.F90: Fixed bug where gtypeMaxCutoff was |
69 |
+ |
not initialized after creation. When maxval(gtypeMaxCutoff) was |
70 |
+ |
called, the largest random garbage value was returned from the |
71 |
+ |
array. |
72 |
+ |
|
73 |
+ |
2005-09-14 19:14 chrisfen |
74 |
+ |
|
75 |
+ |
* src/: brains/SimInfo.cpp, brains/SimInfo.hpp, io/Globals.cpp, |
76 |
+ |
io/Globals.hpp: changes to include the coulombicCorrection selector |
77 |
+ |
|
78 |
+ |
2005-09-14 19:13 chrisfen |
79 |
+ |
|
80 |
+ |
* src/UseTheForce/DarkSide/: Makefile, electrostatic.F90, |
81 |
+ |
reactionField.F90: added in the undamped wolf, in the process of |
82 |
+ |
doing the damped wolf |
83 |
+ |
|
84 |
+ |
2005-09-14 19:13 chrisfen |
85 |
+ |
|
86 |
+ |
* src/UseTheForce/: doForces.F90, doForces_interface.F90, |
87 |
+ |
doForces_interface.h, notifyCutoffs.F90: some changes to activate |
88 |
+ |
the coulombicCorrection selector |
89 |
+ |
|
90 |
+ |
2005-09-14 19:11 chrisfen |
91 |
+ |
|
92 |
+ |
* samples/water/dimer/: cl.in, cl.md, water.md: just some testing |
93 |
+ |
|
94 |
+ |
2005-09-14 19:11 chrisfen |
95 |
+ |
|
96 |
+ |
* samples/argon/: 500.in, 500.md: Equilibrated the sample |
97 |
+ |
|
98 |
+ |
2005-09-14 19:10 chrisfen |
99 |
+ |
|
100 |
+ |
* forceFields/DUFF2.frc: re-added Cl- and Na+ |
101 |
+ |
|
102 |
+ |
2005-09-14 15:31 chuckv |
103 |
+ |
|
104 |
+ |
* src/UseTheForce/DarkSide/eam.F90: EAM now uses eamlist to lookup |
105 |
+ |
eamAtypes instead of assuming a 1-1 correspondence to atypes. |
106 |
+ |
|
107 |
+ |
2005-09-14 15:28 gezelter |
108 |
+ |
|
109 |
+ |
* src/UseTheForce/doForces.F90: fix to put back calculation of r in |
110 |
+ |
do_prepair |
111 |
+ |
|
112 |
+ |
2005-09-14 14:02 gezelter |
113 |
+ |
|
114 |
+ |
* src/UseTheForce/DarkSide/LJ.F90: fixed a bug in the |
115 |
+ |
createMixingMap routine. It should now set doShift correctly |
116 |
+ |
|
117 |
+ |
2005-09-07 17:44 chuckv |
118 |
+ |
|
119 |
+ |
* src/UseTheForce/doForces.F90: Added nGroupsInRow for mpi build. |
120 |
+ |
|
121 |
+ |
2005-09-07 17:23 chuckv |
122 |
+ |
|
123 |
+ |
* src/UseTheForce/DarkSide/simParallel.F90: Added access to mpi |
124 |
+ |
logical variables |
125 |
+ |
|
126 |
+ |
2005-09-07 17:08 gezelter |
127 |
+ |
|
128 |
+ |
* src/UseTheForce/doForces.F90: bugfix on the grouptype finding |
129 |
+ |
algorithm |
130 |
+ |
|
131 |
+ |
2005-09-07 15:46 gezelter |
132 |
+ |
|
133 |
+ |
* src/: UseTheForce/doForces.F90, |
134 |
+ |
UseTheForce/doForces_interface.F90, UseTheForce/notifyCutoffs.F90, |
135 |
+ |
UseTheForce/notifyCutoffs_interface.F90, |
136 |
+ |
UseTheForce/notifyCutoffs_interface.h, brains/SimInfo.cpp, |
137 |
+ |
io/Globals.cpp, io/Globals.hpp: adding c-side interface to change |
138 |
+ |
cutoff Policy |
139 |
+ |
|
140 |
+ |
2005-09-07 14:18 gezelter |
141 |
+ |
|
142 |
+ |
* src/UseTheForce/doForces.F90: Some bug hunting |
143 |
+ |
|
144 |
+ |
2005-09-07 14:18 gezelter |
145 |
+ |
|
146 |
+ |
* samples/argon/argonNVT.md: Just a longer test |
147 |
+ |
|
148 |
+ |
2005-09-06 12:32 chuckv |
149 |
+ |
|
150 |
+ |
* src/UseTheForce/doForces.F90: Added allocation for gtypeCutoffmap |
151 |
+ |
etc.. |
152 |
+ |
|
153 |
+ |
2005-09-01 17:56 gezelter |
154 |
+ |
|
155 |
+ |
* src/UseTheForce/doForces.F90: initialized atomTypeMaxCutoff(i) to |
156 |
+ |
zero |
157 |
+ |
|
158 |
+ |
2005-09-01 15:17 gezelter |
159 |
+ |
|
160 |
+ |
* src/UseTheForce/: doForces.F90, doForces_interface.F90: wrote |
161 |
+ |
createGtypeCutoffMap |
162 |
+ |
|
163 |
+ |
2005-08-30 13:23 chrisfen |
164 |
+ |
|
165 |
+ |
* src/: UseTheForce/doForces.F90, |
166 |
+ |
UseTheForce/doForces_interface.F90, |
167 |
+ |
UseTheForce/doForces_interface.h, |
168 |
+ |
UseTheForce/DarkSide/electrostatic.F90, |
169 |
+ |
UseTheForce/DarkSide/gb.F90, brains/SimInfo.cpp, |
170 |
+ |
brains/fSimulation.h, io/Globals.cpp, io/Globals.hpp: made some |
171 |
+ |
changes for implementing the wolf potential |
172 |
+ |
|
173 |
+ |
2005-08-26 17:39 chrisfen |
174 |
+ |
|
175 |
+ |
* src/UseTheForce/DarkSide/eam.F90: updated getEAMCut |
176 |
+ |
|
177 |
+ |
2005-08-26 16:30 chrisfen |
178 |
+ |
|
179 |
+ |
* src/UseTheForce/: doForces.F90, DarkSide/eam.F90, |
180 |
+ |
DarkSide/gb.F90, DarkSide/shapes.F90, DarkSide/sticky.F90: added |
181 |
+ |
some probably nonfunctional get*cut routines |
182 |
+ |
|
183 |
+ |
2005-08-26 15:34 chuckv |
184 |
+ |
|
185 |
+ |
* src/UseTheForce/DarkSide/eam.F90: Added eamType map to atid map. |
186 |
+ |
|
187 |
+ |
2005-08-26 11:36 gezelter |
188 |
+ |
|
189 |
+ |
* src/UseTheForce/doForces.F90: fixing some of the problems in the |
190 |
+ |
interactionHash and gtypeCutoff routines |
191 |
+ |
|
192 |
+ |
2005-08-17 10:26 gezelter |
193 |
+ |
|
194 |
+ |
* src/UseTheForce/: doForces.F90, fCutoffPolicy.h, |
195 |
+ |
DarkSide/simulation.F90: added fCutoffPolicy.h |
196 |
+ |
|
197 |
+ |
2005-08-11 16:04 gezelter |
198 |
+ |
|
199 |
+ |
* src/UseTheForce/: doForces.F90, notifyCutoffs.F90: breakage in |
200 |
+ |
progress |
201 |
+ |
|
202 |
+ |
2005-08-10 14:17 gezelter |
203 |
+ |
|
204 |
+ |
* src/primitives/StuntDouble.hpp: putting spaceballs back where |
205 |
+ |
they belong |
206 |
+ |
|
207 |
+ |
2005-08-09 17:33 gezelter |
208 |
+ |
|
209 |
+ |
* src/UseTheForce/DarkSide/LJ.F90: Complete rewrite of Lennard |
210 |
+ |
Jones module |
211 |
+ |
|
212 |
+ |
2005-08-09 17:33 gezelter |
213 |
+ |
|
214 |
+ |
* src/UseTheForce/doForces.F90: Breaky Breaky BREAKY breaky breaky |
215 |
+ |
|
216 |
+ |
2005-08-09 14:40 chuckv |
217 |
+ |
|
218 |
+ |
* src/UseTheForce/doForces.F90: In process of re-write for group |
219 |
+ |
based cutoff.... |
220 |
+ |
|
221 |
+ |
2005-07-29 14:38 gezelter |
222 |
+ |
|
223 |
+ |
* src/UseTheForce/doForces.F90: fixes in progress |
224 |
+ |
|
225 |
+ |
2005-07-29 12:34 tim |
226 |
+ |
|
227 |
+ |
* src/UseTheForce/doForces.F90: fix a bug which does not update |
228 |
+ |
me_i and me_j correctly |
229 |
+ |
|
230 |
+ |
2005-07-28 17:12 chuckv |
231 |
+ |
|
232 |
+ |
* src/UseTheForce/: doForces.F90, notifyCutoffs.F90: Changed |
233 |
+ |
cutoffs... Segfaults nicely now... |
234 |
+ |
|
235 |
+ |
2005-07-20 12:04 gezelter |
236 |
+ |
|
237 |
+ |
* configure, ac-tools/aclocal.m4: fixed ACX_MPI to ignore some text |
238 |
+ |
error messages from pathscale compiler |
239 |
+ |
|
240 |
+ |
2005-07-13 11:48 tim |
241 |
+ |
|
242 |
+ |
* src/applications/staticProps/DensityPlot.cpp: std::bind2nd is in |
243 |
+ |
<functional> |
244 |
+ |
|
245 |
+ |
2005-07-13 10:54 tim |
246 |
+ |
|
247 |
+ |
* src/: UseTheForce/fSwitchingFunction.h, |
248 |
+ |
UseTheForce/mpiComponentPlan.h, |
249 |
+ |
UseTheForce/DarkSide/fInteractionMap.h, brains/fSimulation.h, |
250 |
+ |
io/BASS_interface.h, io/BASS_parse.c, io/BASS_parse.h, |
251 |
+ |
io/BASSlex.l, io/BASSyacc.y, io/interface.c, io/make_nodes.c, |
252 |
+ |
io/mpiBASS.c, io/mpiBASS.h, io/node_list.h, io/parse_tree.c, |
253 |
+ |
io/parse_tree.h, math/MatVec3.c, utils/residentMem.c, |
254 |
+ |
utils/simError.c, utils/simError.h: replace c++ style comment in c |
255 |
+ |
files |
256 |
+ |
|
257 |
+ |
2005-07-03 15:53 chuckv |
258 |
+ |
|
259 |
+ |
* src/: UseTheForce/doForces.F90, UseTheForce/notifyCutoffs.F90, |
260 |
+ |
UseTheForce/DarkSide/simulation.F90, utils/oopseMPI.F90: Added |
261 |
+ |
subroutine to set cuttoff for Interaction map and function in |
262 |
+ |
simulation.F90 to determine if a particular atype is present in a |
263 |
+ |
simulation. |
264 |
+ |
|
265 |
+ |
2005-06-28 08:58 gezelter |
266 |
+ |
|
267 |
+ |
* src/UseTheForce/doForces.F90: [no log message] |
268 |
+ |
|
269 |
+ |
2005-06-27 17:21 chuckv |
270 |
+ |
|
271 |
+ |
* src/UseTheForce/doForces.F90: More breaking and destruction of |
272 |
+ |
force code. Does not build at this point... |
273 |
+ |
|
274 |
+ |
2005-06-27 16:01 gezelter |
275 |
+ |
|
276 |
+ |
* src/: UseTheForce/doForces.F90, UseTheForce/DarkSide/atype.F90, |
277 |
+ |
UseTheForce/DarkSide/fInteractionMap.h, |
278 |
+ |
UseTheForce/DarkSide/interactions.F90, utils/definitions.F90: |
279 |
+ |
Breaky breaky! |
280 |
+ |
|
281 |
+ |
2005-06-20 11:03 gezelter |
282 |
+ |
|
283 |
+ |
* samples/water/ssd/ssd.md, |
284 |
+ |
src/applications/staticProps/DensityPlot.cpp: fixed a bug and ran a |
285 |
+ |
simulation |
286 |
+ |
|
287 |
+ |
2005-06-13 13:25 tim |
288 |
+ |
|
289 |
+ |
* src/: applications/staticProps/DensityPlot.cpp, |
290 |
+ |
applications/staticProps/DensityPlot.hpp, |
291 |
+ |
applications/staticProps/SCDOrderParameter.cpp, |
292 |
+ |
applications/staticProps/StaticProps.cpp, |
293 |
+ |
io/AtomTypesSectionParser.cpp: working version of DensityPlot |
294 |
+ |
|
295 |
+ |
2005-05-31 17:31 chuckv |
296 |
+ |
|
297 |
+ |
* src/: brains/SimInfo.cpp, integrators/Velocitizer.cpp: Changes to |
298 |
+ |
remove angular momentum. |
299 |
+ |
|
300 |
+ |
2005-05-31 12:34 chuckv |
301 |
+ |
|
302 |
+ |
* src/applications/nanoRodBuilder/nanorodBuilder.cpp: Fixed bug in |
303 |
+ |
typo in nanorodBuilder. |
304 |
+ |
|
305 |
+ |
2005-05-30 09:01 chuckv |
306 |
+ |
|
307 |
+ |
* src/: applications/nanoRodBuilder/nanorodBuilder.cpp, |
308 |
+ |
brains/SimInfo.cpp, brains/SimInfo.hpp, brains/Stats.cpp, |
309 |
+ |
brains/Stats.hpp, integrators/Velocitizer.cpp, |
310 |
+ |
integrators/Velocitizer.hpp: Added method to remove system angular |
311 |
+ |
momentum to velocitizer and added method to calculate system |
312 |
+ |
angular momentum to siminfo. |
313 |
+ |
|
314 |
+ |
2005-05-29 16:16 chrisfen |
315 |
+ |
|
316 |
+ |
* src/UseTheForce/DarkSide/: electrostatic.F90, sticky.F90: Removed |
317 |
+ |
balance from the Darkside (files) |
318 |
+ |
|
319 |
+ |
2005-05-29 16:15 chrisfen |
320 |
+ |
|
321 |
+ |
* src/UseTheForce/doForces.F90: Removed balance from doForces |
322 |
+ |
|
323 |
+ |
2005-05-29 16:15 chrisfen |
324 |
+ |
|
325 |
+ |
* samples/water/tap/: tap.in, tap.md: Updated tap sample |
326 |
+ |
|
327 |
+ |
2005-05-29 16:15 chrisfen |
328 |
+ |
|
329 |
+ |
* samples/water/dimer/: Makefile, tap.in, tap.md: Included a tap |
330 |
+ |
dimer for testing purposes |
331 |
+ |
|
332 |
+ |
2005-05-29 16:14 chrisfen |
333 |
+ |
|
334 |
+ |
* forceFields/DUFF2.frc: Re-entered the TIP4P-Ew water model. It |
335 |
+ |
was apparently wiped earlier this month... |
336 |
+ |
|
337 |
+ |
2005-05-29 16:13 chrisfen |
338 |
+ |
|
339 |
+ |
* ChangeLog: ran make cvslog |
340 |
+ |
|
341 |
|
2005-05-28 19:16 tim |
342 |
|
|
343 |
|
* src/visitors/: AtomNameVisitor.cpp, AtomNameVisitor.hpp: adding |