--- trunk/OOPSE-2.0/make/Makefile.in	2005/04/11 19:06:57	2158
+++ trunk/OOPSE-2.0/make/Makefile.in	2005/04/13 22:30:22	2190
@@ -51,14 +51,16 @@ PackageLibs = \
 	minimizers \
 	selection \
 	restraints \
+	lattice \
 
 #packages containing applications
 Applications = \
 	applications/oopse \
 	applications/dump2Xyz \
-        applications/simpleBuilder\
 	applications/staticProps \
 	applications/dynamicProps \
+        applications/simpleBuilder\
+	applications/nanoRodBuilder \
 
 Samples = \
 	samples/argon \
@@ -75,14 +77,17 @@ IncludeDirs = \
 	samples/zcons \
 
 IncludeDirs = \
-	@MPI_INC_DIR@
+	@CGAL_INC_DIR@ \
+	@MPI_INC_DIR@ 
 
 LibraryDirs = \
+	@CGAL_LIB_DIR@ \
 	@MPI_LIB_DIR@ 
 
 Libraries = \
+	@CGAL_LIBS@ \
 	@MPI_LIB@ \
-	@MPI_F90_LIB@
+	@MPI_F90_LIB@ 
 
 OopseHome       = @OOPSE_HOME@
 ForceParamDir   = $(OopseHome)/share/forceFields
@@ -243,7 +248,7 @@ ifndef __have_eval
 __ignore := $(eval __have_eval := $(true))
 
 ifndef __have_eval
-  uc = $(shell echo $1 | tr "A-Z" "a-z")
+  uc = $(shell echo $1 | tr "a-z" "A-Z")
   lc = $(shell echo $1 | tr "A-Z" "a-z")
 else
   uc = $(call tr,$([a-z]),$([A-Z]),$1)