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Comparing trunk/OOPSE-2.0/make/Makefile.in (file contents):
Revision 1527 by tim, Tue Oct 5 22:57:01 2004 UTC vs.
Revision 2456 by gezelter, Fri Nov 18 17:50:17 2005 UTC

# Line 34 | Line 34 | IS_UNIX=1
34   #
35   #---------------------------------------------------------------------------
36   IS_UNIX=1
37 < #packages to be made
38 < Packages = \
37 >
38 > #packages containing libraries
39 > PackageLibs = \
40          utils \
41 +        visitors \
42          math \
43          types \
44          primitives \
43        visitors \
45          UseTheForce/DarkSide \
46          UseTheForce \
47          brains \
48          io \
49 <        integrators \
49 <        minimizers \
49 >        integrators\
50          constraints \
51 <        profiling \
51 >        minimizers \
52 >        selection \
53          restraints \
54 +        lattice \
55 +        openbabel
56 +
57 + #packages containing applications
58 + Applications = \
59          applications/oopse \
60          applications/dump2Xyz \
61 <        applications/simpleBuilder \
61 >        applications/staticProps \
62 >        applications/dynamicProps \
63 >        applications/simpleBuilder\
64 >        applications/nanoRodBuilder \
65 >        applications/atom2mdin
66  
67 < #packages contain libraries
68 < PackageLibs = \
69 <        utils \
70 <        math \
71 <        types \
72 <        primitives \
73 <        visitors \
74 <        UseTheForce/DarkSide \
75 <        UseTheForce \
76 <        brains \
77 <        io \
78 <        integrators \
79 <        minimizers \
80 <        constraints \
81 <        profiling \
82 <        restraints \
67 > Samples = \
68 >        samples/argon \
69 >        samples/water/dimer \
70 >        samples/water/spce \
71 >        samples/water/ssd \
72 >        samples/water/ssde \
73 >        samples/water/ssdrf \
74 >        samples/water/ssd-ion \
75 >        samples/water/tip3p_ice \
76 >        samples/water/tip4p \
77 >        samples/lipid \
78 >        samples/alkane \
79 >        samples/minimizer \
80 >        samples/metals \
81 >        samples/thermoIntegration/liquid \
82 >        samples/thermoIntegration/solid \
83 >        samples/dipole \
84 >        samples/shape \
85 >        samples/zcons \
86  
87   IncludeDirs = \
88 <        @SPRNG_INC_DIR@ \
89 <        @MPI_INC_DIR@
88 >        @CGAL_INC_DIR@ \
89 >        @MPI_INC_DIR@
90  
91   LibraryDirs = \
92 <        @SPRNG_LIB_DIR@ \
92 >        @CGAL_LIB_DIR@ \
93          @MPI_LIB_DIR@
94  
95   Libraries = \
96 <        @SPRNG_LIB@ \
96 >        @LIBS@ \
97 >        @CGAL_LIBS@ \
98          @MPI_LIB@ \
99 <        @MPI_F90_LIB@
99 >        @MPI_F90_LIB@
100  
101   OopseHome       = @OOPSE_HOME@
102 < ForceParamDir   = @OOPSE_HOME@/share/forceFields/
103 < SampleSimDir    = @OOPSE_HOME@/share/samples/
102 > ForceParamDir   = $(OopseHome)/share/forceFields
103 > SampleSimDir    = $(OopseHome)/share/samples
104 > InstallBinDir   = $(OopseHome)/bin
105 > DocDir          = $(OopseHome)/doc
106   FrcDeclare      = -DFRC_PATH="$(ForceParamDir)"
107 + F90Declare      = -D__FORTRAN90
108   ParallelDeclare = -DIS_MPI
109   UseMPI          = @USE_MPI@
110 + ModuleCase      = @F90_MODULE_NAMES@
111 + ModSuffix       = @MOD@
112 + LinkOptions = \
113 +        @F90LIBS@
114  
115 + ParallelLinkOptions = \
116 +        @F90LIBS@
117 +
118 +
119   #---------------------------------------------------------------------------
120   #
121   #  Directories
# Line 101 | Line 126 | ParallelLibDir    = $(DEV_ROOT)/MPIlib
126   TargetDir         = $(DEV_ROOT)/obj
127   ParallelTargetDir = $(DEV_ROOT)/MPIobj
128   LibDir            = $(DEV_ROOT)/lib
104 ParallelLibDir    = $(DEV_ROOT)/MPIlib
129   MakeDir           = $(DEV_ROOT)/make
130 + MainMakefile      = $(MakeDir)/Makefile
131   BinDir            = $(DEV_ROOT)/bin
132   DocsDir           = $(DEV_ROOT)/docs
133   CurrentDir        = $(CURDIR)
134 < RPath = $(shell cd $(DEV_ROOT); pwd)/lib:$(OopseHome)/lib
135 < ParallelRPath = $(shell cd $(DEV_ROOT); pwd)/MPIlib:$(OopseHome)/MPIlib
111 < LinkOptions = \
112 <        @F90LIBS@ \
113 <        -Wl,-R$(RPath)
134 > CombinedStaticLib = $(LibDir)/libOOPSE.a
135 > CombinedParallelStaticLib = $(LibDir)/libOOPSE_MPI.a
136  
115 ParallelLinkOptions = \
116        @F90LIBS@ \
117        -Wl,-R$(ParallelRPath)
118
137   ifdef Source
138   #get the relative path of current package to source directory
139   # /home/maul/gezelter/src/code/src/UseTheForce/Darkside --> UseTheForce/Darkside
140   #Package          = $(shell echo $(CurrentDir) | sed -e 's/^.*\/src\/\(.*\)/\1/g')
141   #use shell script to get the absolute path and then rip it off from $(CurrentDir)
142 < Package          = $(subst $(shell cd $(SourceDir); pwd)/,,$(CurrentDir))
142 > #Package          = $(subst $(shell cd $(SourceDir); pwd)/,,$(CurrentDir))
143 > # REMINDER: We are now using the Package line in each subdir makefile.
144 > # This avoids the strange path problem and the subshell
145  
146   PackageList              = $(Package)
147   PackageSourceDir         = $(SourceDir)/$(Package)
# Line 129 | Line 149 | PackageList              = $(Packages) $(JavaPackages)
149   PackageParallelTargetDir = $(ParallelTargetDir)
150   JavaMainClass            = $(subst /,.,$(Package)).$(Main)
151   else
152 < PackageList              = $(Packages) $(JavaPackages)
152 > PackageList              = $(PackageLibs) $(JavaPackages) $(Applications)
153   endif
154  
155   PackageListLoop          = $(patsubst %,$(SourceDir)/%/.loop,$(PackageList))
# Line 199 | Line 219 | OtherTargetFiles       = $(OtherSourceFiles:%=$(Packag
219                           $(LexFiles:%.l=     %.c)
220  
221   OtherTargetFiles       = $(OtherSourceFiles:%=$(PackageTargetDir)/%)
222 +
223 + ###########################################################################
224 + #
225 + # Figure out the names of the module files based on some work done by
226 + # configure.  The tr function below is from John Graham-Cumming
227 + # (http://www.jgc.org).
228 + #
229 + # The tr function.   Has three arguments:
230 + #
231 + # $1   The list of characters to translate from
232 + # $2   The list of characters to translate to
233 + # $3   The text to translate
234 + #
235 + # For example, $(call tr,A B C,1 2 3,CAPITAL) becomes 21PIT1L.
236 +
237 + tr = $(eval __t := $3)                                                    \
238 +     $(foreach c,                                                         \
239 +         $(join $(addsuffix :,$1),$2),                                    \
240 +         $(eval __t :=                                                    \
241 +             $(subst $(word 1,$(subst :, ,$c)),$(word 2,$(subst :, ,$c)), \
242 +                 $(__t))))$(__t)
243 +
244 + # Common character classes for use with the tr function.  Each of
245 + # these is actually a variable declaration and must be wrapped with
246 + # $() or ${} to be used.
247  
248 + [A-Z] := A B C D E F G H I J K L M N O P Q R S T U V W X Y Z #
249 + [a-z] := a b c d e f g h i j k l m n o p q r s t u v w x y z #
250 + [0-9] := 0 1 2 3 4 5 6 7 8 9 #
251 + [A-F] := A B C D E F #
252 +
253 + # Figure out whether we have $(eval) or not (GNU Make 3.80 and above)
254 + # if we do not then we need to use the shell version of tr, and not the
255 + # faster tr function above:
256 +
257 + __have_eval := $(false)
258 + __ignore := $(eval __have_eval := $(true))
259 +
260 + ifndef __have_eval
261 +  uc = $(shell echo $1 | tr "a-z" "A-Z")
262 +  lc = $(shell echo $1 | tr "A-Z" "a-z")
263 + else
264 +  uc = $(call tr,$([a-z]),$([A-Z]),$1)
265 +  lc = $(call tr,$([A-Z]),$([a-z]),$1)
266 + endif
267 +
268 + # OK, now we can actually use these functions to figure out the names
269 + # of the module files:
270 +
271 + ifneq "$(words $(Modules))" "0"
272 + ifeq "$(ModuleCase)" "UPPER"
273 +  MODULES = $(call uc,$(Modules))
274 + else
275 +  ifeq "$(ModuleCase)" "lower"
276 +    MODULES = $(call lc,$(Modules))
277 +  else
278 +    MODULES = $(Modules)
279 +  endif
280 + endif
281 +  ModuleFiles = $(MODULES:%= $(PackageTargetDir)/%.$(ModSuffix))
282 +  ParallelModuleFiles = $(MODULES:%= $(PackageParallelTargetDir)/%.$(ModSuffix))
283 + endif
284 + #
285 + ###########################################################################
286 +
287   ThirdPartyJarsTmp = $(patsubst %,$(LibDir)/%,$(JavaLibraries))
288   ThirdPartyJars    = $(subst $(Space),$(X),$(ThirdPartyJarsTmp))
289  
# Line 211 | Line 295 | ifneq  "$(words $(ObjectFiles) $(ParallelObjectFiles))
295   #if Main is defined, do not build library. It may not be true sometimes
296   ifneq  "$(words $(ObjectFiles) $(ParallelObjectFiles))" "0"
297    DependencyFile    = $(PackageSourceDir)/Makedepend
298 <  ifneq "$(Main)" ""
298 >  ifneq "$(words $(Main))" "0"
299      Executable             = $(BinDir)/$(Main)
300 <    ParallelExecutable     = $(BinDir)/$(Main)_MPI
300 >    ifeq "$(BuiltParallelExe)" "1"
301 >      ParallelExecutable     = $(BinDir)/$(Main)_MPI
302 >    endif
303    else
304 <    SharedLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package))).so
305 <    StaticLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package))).a
306 <    ParallelSharedLibrary  = $(ParallelLibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package))).so
307 <    ParallelStaticLibrary  = $(ParallelLibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package))).a
304 >    SharedLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.so
305 >    StaticLibrary          = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.a
306 >    ParallelSharedLibrary  = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_MPI.so
307 >    ParallelStaticLibrary  = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_MPI.a
308    endif
309   endif
310 +
311   #
312   # Misc
313   #
# Line 228 | Line 315 | ParallelLibDirs  = -L$(ParallelLibDir)  $(LibraryDirs:
315   JavaPackageNames = $(subst /,.,$(JavaPackages))
316   IncludePath      = -I$(SourceDir) $(IncludeDirs:%=-I%)
317   LibDirs          = -L$(LibDir)    $(LibraryDirs:%=-L%)
318 < ParallelLibDirs  = -L$(ParallelLibDir)  $(LibraryDirs:%=-L%)
319 < LocalLibs        = $(subst /,,$(patsubst %, oopse_%, $(PackageLibs)))
233 < ParallelLocalLibs= $(subst /,,$(patsubst %, oopse_%, $(PackageLibs)))
318 > LocalLibs        = $(subst /,,$(patsubst %, oopse_%_UP, $(PackageLibs)))
319 > ParallelLocalLibs= $(subst /,,$(patsubst %, oopse_%_MPI, $(PackageLibs)))
320   LibList          = $(LocalLibs:%=-l%) $(Libraries)
321 + LibNames         = $(LocalLibs:%=$(LibDir)/lib%.a)
322   ParallelLibList  = $(ParallelLocalLibs:%=-l%) $(Libraries)
323 + ParallelLibNames = $(ParallelLocalLibs:%=$(LibDir)/lib%.a)
324  
325  
326   #---------------------------------------------------------------------------
# Line 241 | Line 329 | Move                   = mv
329   #
330   #---------------------------------------------------------------------------
331   Print                  = @echo
332 < Move                   = mv
332 > Move                   = mv -f
333   Copy                   = cp
334   CCompiler              = @CC@
335   CppCompiler            = @CXX@
336   Linker                 = @CXX@
337   MakeDepend             = makedepend
338 < Install                = @INSTALL@
338 > LN_S                   = @LN_S@
339 > INSTALL                = @INSTALL@
340   InstallProgram         = @INSTALL_PROGRAM@
341 + InstallScript          = @INSTALL_SCRIPT@
342   InstallData            = @INSTALL_DATA@
343 < MakeDir                = @MKINSTALLDIRS@
344 < Delete                 = rm -fr
343 > MkDir                  = @MKINSTALLDIRS@
344 > Delete                 = rm -f
345   StaticArchiver         = @AR@
346   DynamicArchiver        = @CC@
347   FortranCompiler        = @FC@
# Line 268 | Line 358 | Lex                    = @LEX@
358   List                   = cat
359   Yacc                   = @YACC@
360   Lex                    = @LEX@
361 + Ranlib                 = @RANLIB@
362 + Doxygen                = @DOXYGEN@
363  
272
364   MakeOptions            = -k
365   MakeDependOptions      =
366   StaticArchiverOptions  = rc
# Line 278 | Line 369 | COptions               = $(FrcDeclare)
369   JniOptions             =
370   RmiOptions             = -d $(TargetDir) -classpath $(ClassPath) \
371                           -sourcepath $(SourceDir)
372 < COptions               = $(FrcDeclare)
373 < CParallelOptions       = $(FrcDeclare) $(ParallelDeclare)
374 < CppOptions             = $(FrcDeclare)
375 < CppParallelOptions     = $(FrcDeclare) $(ParallelDeclare)
372 > COptions               = $(FrcDeclare) @CFLAGS@
373 > CParallelOptions       = $(FrcDeclare) $(ParallelDeclare) @CFLAGS@
374 > CppOptions             = $(FrcDeclare) @CXXFLAGS@ @OOPSE_TEMPLATE_FLAGS@
375 > CppParallelOptions     = $(FrcDeclare) $(ParallelDeclare) @CXXFLAGS@ @OOPSE_TEMPLATE_FLAGS@
376   FortranOptions         =
377 < F90Options             =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) -module $(TargetDir)
378 < F90ParallelOptions     =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) -module $(ParallelTargetDir)  @PREPDEFFLAG@$(ParallelDeclare)
377 > F90Options             =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(TargetDir)
378 > F90ParallelOptions     =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir)  @PREPDEFFLAG@$(ParallelDeclare)
379   JavaCompilerOptions    = -d $(TargetDir) -classpath $(ClassPath) \
380                           -sourcepath $(SourceDir) -deprecation
381   JavaRunOptions         = -classpath $(ClassPath)
# Line 306 | Line 397 | Space                  = $(Empty) $(Empty)
397  
398   Empty                  =
399   Space                  = $(Empty) $(Empty)
400 +
401 +
402 + #---------------------------------------------------------------------------
403 + #
404 + #  Install
405 + #
406 + #---------------------------------------------------------------------------
407 +
408 + ifneq "$(words $(SampleFiles))" "0"
409 +  MySample                 = $(subst $(shell cd $(DEV_ROOT)/samples; pwd)/,,$(CurrentDir))
410 +  MyInstallDir             = $(SampleSimDir)/$(MySample)
411 +  InstallFiles             = $(SampleFiles)
412 +  InstallCommand           = $(InstallData)
413 + endif
414 +
415 + ifneq "$(words $(Main))" "0"
416 +  MyInstallDir             = $(InstallBinDir)
417 +  ifeq "$(UseMPI)" "yes"
418 +    InstallFiles             = $(Executable) $(ParallelExecutable)
419 +  else
420 +    InstallFiles             = $(Executable)
421 +  endif
422 +  InstallCommand           = $(InstallProgram)
423 + endif
424 +
425 + ifneq "$(words $(ForcefieldFiles))" "0"
426 +  MyInstallDir             = $(ForceParamDir)
427 +  InstallFiles             = $(ForcefieldFiles)
428 +  InstallCommand           = $(InstallData)
429 + endif
430 +
431 + ifneq "$(words $(InstallFiles))" "0"
432 +  InstallList            =
433 + else
434 +  InstallList            = $(patsubst %,$(DEV_ROOT)/%,$(Samples)) $(DEV_ROOT)/forceFields $(patsubst %, $(SourceDir)/%,$(Applications))
435 + endif
436  
437 + InstallListLoop          = $(patsubst %,$(SourceDir)/%/.install,$(PackageList))  $(patsubst %,%/.install,$(InstallList))
438  
439 +
440 +
441   #---------------------------------------------------------------------------
442   #
443   # Rules
# Line 320 | Line 450 | $(PackageTargetDir) :
450  
451   # Create target directory
452   $(PackageTargetDir) :
453 <        $(MakeDir) $@
453 >        $(MkDir) $@
454  
455 + $(BinDir) :
456 +        $(MkDir) $@
457 +
458   # .c -> .o
459 < $(PackageTargetDir)/%.o : %.c
459 > $(PackageTargetDir)/%.o : %.c $(MainMakefile)
460          $(Print) $@
461          $(CCompiler) $(COptions) -c $(IncludePath) $< -o $@
462  
463 < $(PackageParallelTargetDir)/%.o : %.c
463 > $(PackageParallelTargetDir)/%.o : %.c $(MainMakefile)
464          $(Print) $@
465          $(CCompiler) $(CParallelOptions) -c $(IncludePath) $< -o $@
466  
467   ifeq "$(UseMPI)" "yes"
468 < %.o : %.c
468 > %.o : %.c $(MainMakefile)
469          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
470          $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
471   else
472 < %.o : %.c
472 > %.o : %.c $(MainMakefile)
473          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
474   endif
475  
476   # .cpp -> .o
477 < $(PackageTargetDir)/%.o : %.cpp
477 > $(PackageTargetDir)/%.o : %.cpp $(MainMakefile)
478          $(CppCompiler) $(CppOptions) -c $(IncludePath) $< -o $@
479  
480 < $(PackageParallelTargetDir)/%.o : %.cpp
480 > $(PackageParallelTargetDir)/%.o : %.cpp $(MainMakefile)
481          $(CppCompiler) $(CppParallelOptions) -c $(IncludePath) $< -o $@
482  
483   ifeq "$(UseMPI)" "yes"
484 < %.o : %.cpp
484 > %.o : %.cpp $(MainMakefile)
485          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
486          $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
487   else
488 < %.o : %.cpp
488 > %.o : %.cpp $(MainMakefile)
489          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
490   endif
491  
492   # .f -> .o
493 < $(PackageTargetDir)/%.o : %.f
493 > $(PackageTargetDir)/%.o : %.f $(MainMakefile)
494          $(FortranCompiler) $(FortranOptions) -c $< -o $@
495  
496 < $(PackageParallelTargetDir)/%.o : %.f
496 > $(PackageParallelTargetDir)/%.o : %.f $(MainMakefile)
497          $(FortranCompiler) $(FortranParallelOptions) -c $< -o $@
498  
499   ifeq "$(UseMPI)" "yes"
500 < %.o : %.f
500 > %.o : %.f $(MainMakefile)
501          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
502          $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
503   else
504 < %.o : %.f
504 > %.o : %.f $(MainMakefile)
505          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
506   endif
507  
508   # .F90 -> .o
509 < $(PackageTargetDir)/%.o : %.F90
509 > $(PackageTargetDir)/%.o : %.F90 $(MainMakefile)
510          $(F90Compiler) $(F90Options) $(IncludePath) -c $< -o $@
511 +        if test -n "`ls *.$(ModSuffix)`"; then \
512 +          $(Move) `ls *.$(ModSuffix)` $(PackageTargetDir);\
513 +        fi
514  
515 < $(PackageParallelTargetDir)/%.o : %.F90
515 > $(PackageParallelTargetDir)/%.o : %.F90 $(MainMakefile)
516          $(F90Compiler) $(F90ParallelOptions) $(IncludePath) -c $< -o $@
517 +        if test -n "`ls *.$(ModSuffix)`"; then \
518 +          $(Move) "`ls *.$(ModSuffix)`" $(PackageParallelTargetDir);\
519 +        fi
520  
521   ifeq "$(UseMPI)" "yes"
522 < %.o : %.F90
522 > %.o : %.F90 $(MainMakefile)
523          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
524 +        if test -n "`ls *.$(ModSuffix)`"; then\
525 +          $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
526 +        fi
527 +
528          $(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
529 +        if test -n "`ls *.$(ModSuffix)`"; then\
530 +          $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
531 +        fi
532 +
533   else
534 < %.o : %.F90
534 > %.o : %.F90 $(MainMakefile)
535          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
536 +        if test -n "`ls *.$(ModSuffix)`"; then\
537 +          $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
538 +        fi
539   endif
540  
541  
# Line 423 | Line 573 | $(LibDir)/%.a : $(ObjectFiles)
573  
574   # .o -> .a
575  
576 < $(LibDir)/%.a : $(ObjectFiles)
576 > $(LibDir)/%_UP.a : $(ObjectFiles)
577          $(StaticArchiver) $(StaticArchiverOptions) $@ $(ObjectFiles)
578 +        @touch $(LibDir)/.stamp_UP
579  
580 < $(ParallelLibDir)/%.a: $(ParallelObjectFiles)
580 > $(LibDir)/%_MPI.a: $(ParallelObjectFiles)
581          $(StaticArchiver) $(StaticArchiverOptions) $@ $(ParallelObjectFiles)
582 +        @touch $(LibDir)/.stamp_MPI
583  
584 < ifeq "$(UseMPI)" "yes"
433 < %.a : $(ObjectFiles) $(ParallelObjectFiles)
584 > %_UP.a : $(ObjectFiles)
585          $(MAKE) $(MakeOptions) $(LibDir)/$@
586 <        $(MAKE) $(MakeOptions) $(ParallelLibDir)/$@
587 < else
437 < %.a : $(ObjectFiles)
586 >
587 > %_MPI.a : $(ParallelObjectFiles)
588          $(MAKE) $(MakeOptions) $(LibDir)/$@
439 endif
589  
590   # .o -> .so
591 < $(LibDir)/%.so : $(ObjectFiles)
591 > $(LibDir)/%_UP.so : $(ObjectFiles)
592          $(DynamicArchiver) $(ObjectFiles) $(DynamicArchiverOptions) -o $@
593  
594 < $(ParallelLibDir)/%.so : $(ParallelObjectFiles)
594 > $(LibDir)/%_MPI.so : $(ParallelObjectFiles)
595          $(DynamicArchiver) $(ParallelObjectFiles) $(DynamicArchiverOptions) -o $@
596  
597 < ifeq "$(UseMPI)" "yes"
449 < %.so : $(ObjectFiles) $(ParallelObjectFiles)
597 > %_UP.so : $(ObjectFiles)
598          $(MAKE) $(MakeOptions) $(LibDir)/$@
599 <        $(MAKE) $(MakeOptions) $(ParallelLibDir)/$@
600 < else
453 < %.so : $(ObjectFiles)
599 >
600 > %_MPI.so : $(ParallelObjectFiles)
601          $(MAKE) $(MakeOptions) $(LibDir)/$@
455 endif
602  
603   # .class -> .jar
604   $(LibDir)/%.jar : $(JavaClassFiles) $(OtherTargetFiles)
# Line 486 | Line 632 | $(PackageTargetDir)/%_Skel.class : $(PackageTargetDir)
632   %_Skel.class : %.class
633          $(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
634  
635 + document :
636 +        $(Print) Generate Documentation for OOPSE-2.0
637 +        @cd $(DEV_ROOT)/src    
638 +        $(Doxygen) $(DEV_ROOT)/make/Doxyfile
639 +
640 + #GUN make funtions to merge the libraries
641 + find_objs = $(shell $(StaticArchiver) -t $(1))
642 + extract_objs = $(shell $(StaticArchiver) -x $(1) $(call find_objs, $(1)))
643 + create_archive = $(shell  $(StaticArchiver) $(StaticArchiverOptions) $(2) $(call find_objs, $(1)))
644 + remove_objs = $(shell $(Delete) $(call find_objs, $(1)))
645 + do_create = $(call extract_objs,$(1))$(call create_archive,$(1),$(2))$(call remove_objs,$(1))  
646 + do_link = $(shell $(LN_S) $(1) $(2))
647 +
648 + $(CombinedStaticLib) : $(LibDir)/.stamp_UP
649 +        $(Print) create $@      
650 +        $(foreach thisLib,$(LibNames),$(call do_create,$(thisLib),$@))
651 +        $(Ranlib) $(CombinedStaticLib)
652 +
653 + $(CombinedParallelStaticLib) : $(LibDir)/.stamp_MPI
654 +        $(Print) create $@
655 +        $(foreach thisLib,$(ParallelLibNames), $(call do_create, $(thisLib), $@))
656 +        $(Ranlib) $(CombinedParallelStaticLib)
657 +
658   # Executable
659 < $(Executable) : $(ObjectFiles)
660 <        $(Linker) $(ObjectFiles) $(LinkOptions) $(LibDirs) $(LibList) -o $@
659 > $(Executable) : $(CombinedStaticLib) $(ObjectFiles) $(BinDir)
660 >        $(Linker) $(ObjectFiles) $(CombinedStaticLib) $(LinkOptions) $(LibDirs) $(Libraries) -o $@
661  
662 < $(ParallelExecutable) : $(ParallelObjectFiles)
663 <        $(Linker) $(ParallelObjectFiles)  $(ParallelLinkOptions) $(ParallelLibDirs) $(LibList) -o $@
662 > $(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles) $(BinDir)
663 >        $(Linker) $(ParallelObjectFiles) $(CombinedParallelStaticLib) $(ParallelLinkOptions) $(LibDirs) $(Libraries) -o $@
664  
665   # Anything else is just copied from source to target
666   $(PackageTargetDir)/% : $(PackageSourceDir)/%
# Line 504 | Line 673 | ifeq "$(UseMPI)" "yes"
673  
674   _all : _buildall
675  
676 + _buildall :
677   ifeq "$(UseMPI)" "yes"
678   _buildall : \
679          $(DependencyFile) \
# Line 514 | Line 684 | _buildall : \
684          $(RmiStubFiles) \
685          $(RmiSkeletonFiles) \
686          $(OtherTargetFiles) \
517        $(SharedLibrary) \
687          $(StaticLibrary) \
519        $(ParallelSharedLibrary) \
688          $(ParallelStaticLibrary) \
689          $(JarFile) \
690          $(Executable) \
# Line 530 | Line 698 | _buildall : \
698          $(RmiStubFiles) \
699          $(RmiSkeletonFiles) \
700          $(OtherTargetFiles) \
533        $(SharedLibrary) \
701          $(StaticLibrary) \
702          $(JarFile) \
703          $(Executable)
704   endif
705  
706 + echo : $(PackageListLoop)
707 +        $(Print) Done echo.
708  
709 + _echoall :
710 +        $(Print) $(Modules)
711 +
712   # make clean
713   clean : $(PackageListLoop)
714          $(Print) Done clean.    
715  
716   _cleanall :
717 <        $(Delete) $(ObjectFiles) $(ParallelObjectFiles)
717 >        $(Delete) \
718 >                $(ObjectFiles) \
719 >                $(ModuleFiles) \
720 >                $(ParallelObjectFiles) \
721 >                $(ParallelModuleFiles) \
722 >                $(JarFile) \
723 >                $(SharedLibrary) \
724 >                $(StaticLibrary) \
725 >                $(ParallelSharedLibrary) \
726 >                $(ParallelStaticLibrary) \
727 >                $(CombinedStaticLib) \
728 >                $(CombinedParallelStaticLib)
729  
730   # make distclean
731   distclean : $(PackageListLoop)
732          $(Print) Done clean.    
733  
734 < _distcleanall :
735 <        $(Delete) $(ObjectFiles) \
553 <                  $(ParallelObjectFiles) \
554 <                        $(JarFile) \
555 <                  $(SharedLibrary) \
556 <                  $(StaticLibrary) \
557 <                  $(ParallelSharedLibrary) \
558 <                  $(ParallelStaticLibrary) \
559 <                  $(Executable) \
734 > _distcleanall : _cleanall
735 >        $(Delete) $(Executable) \
736                    $(ParallelExecutable) \
737                    $(DependencyFile)
738  
563
739   # make depend
740   depend : $(PackageListLoop)
741          $(Print) Done dependencies.
# Line 571 | Line 746 | $(DependencyFile) : $(DerivedSource)
746          $(Print) $@
747          @cd $(PackageSourceDir)
748  
574        @touch Make.ctemp
575        @touch Make.ctemp
576
749   ifneq "$(words $(CppFiles))" "0"
750 <        $(CppCompiler) $(IncludePath) -MM $(CppFiles)  > Make.cpptemp
751 <        cat Make.cpptemp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/obj\/&/g' >> $(DependencyFile)
752 <        cat Make.cpptemp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/MPIobj\/&/g' >> $(DependencyFile)
750 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/' -MM $(CppFiles)>> Make.cpptemp
751 >        @cat Make.cpptemp  >> $(DependencyFile)
752 >        $(Delete) Make.cpptemp
753 >
754 >  ifeq "$(UseMPI)" "yes"
755 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CppFiles)>> Make.cpptemp
756 >        @cat Make.cpptemp  >> $(DependencyFile)
757 >        @$(Delete) Make.cpptemp
758 >  endif
759 >
760   endif
761  
762   ifneq "$(words $(CFiles))" "0"
763 <        $(CCompiler)   $(IncludePath) -MM $(CFiles) $(DerivedCFiles)   > Make.ctemp
764 <        cat Make.ctemp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/obj\/&/g' >> $(DependencyFile)
765 <        cat Make.ctemp | sed 's/^[a-zA-Z0-9]/$$\(DEV_ROOT\)\/MPIobj\/&/g' >> $(DependencyFile)
763 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/'  -MM $(CFiles) $(DerivedCFiles)  >> Make.ctemp
764 >        @cat Make.ctemp  >> $(DependencyFile)
765 >        $(Delete) Make.ctemp
766  
767 +  ifeq "$(UseMPI)" "yes"
768 +        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CFiles) $(DerivedCFiles)  >> Make.ctemp
769 +        @cat Make.ctemp  >> $(DependencyFile)
770 +        @$(Delete) Make.ctemp
771 +  endif
772 +
773   endif
774  
775   ifneq "$(words $(F90Files))" "0"
776 <        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(DEV_ROOT)/obj/' -D__FORTRAN90  $(F90Files) > Make.ftemp
777 <        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(DEV_ROOT)/MPIobj/' -DIS_MPI -D__FORTRAN90  $(F90Files) >> Make.ftemp
778 <        cat Make.ftemp >> $(DependencyFile)
776 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/' $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix) $(F90Files) > Make.ftemp
777 >        @cat Make.ftemp >> $(DependencyFile)
778 >        @$(Delete) Make.ftemp
779 >
780 >  ifeq "$(UseMPI)" "yes"
781 >        $(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix)  $(F90Files) >> Make.ftemp
782 >        @cat Make.ftemp >> $(DependencyFile)
783 >        @$(Delete) Make.ftemp
784 >  endif
785 >
786   endif
595        $(Delete) Make.cpptemp Make.ctemp Make.ftemp
787  
788   # make lib
789   lib    : $(PackageListLoop)
# Line 605 | Line 796 | jarsign : $(JarFile)
796   jarsign : $(JarFile)
797          $(JarSigner) -keystore GeoSoftKeystore $(JarFile) myself
798  
799 + #make install
800 + %.install :
801 +        @$(MAKE) $(MakeOptions) -C $(subst .install,,$@) _installall    
802 +
803 + install : $(InstallListLoop)
804 +        $(Print) Done Install
805 +
806 + _installall : _buildall _installdata _installlinks
807 +
808 + $(MyInstallDir) :
809 +        $(MkDir) $@
810 +
811 + _installdata :  $(MyInstallDir)
812 +        $(Print) $(InstallFiles)
813 + ifneq "$(words $(InstallFiles))" "0"
814 +        $(InstallCommand) $(InstallFiles) $(MyInstallDir)
815 + endif      
816 +
817 + _installlinks :  $(MyInstallDir)
818 +        $(Print) $(LinkTargets)
819 + ifneq "$(words $(LinkTargets))" "0"
820 +        @cd $(MyInstallDir)
821 +        $(foreach thisLink,$(LinkTargets),$(call do_link,$(Executable),$(thisLink)))
822 + endif      
823 +
824   # make statistics
825   _statisticsall :
826 <        @$(Print) $(SourceFiles) >> $(DEV_ROOT)/files.tmp
826 >        @$(Print) $(patsubst %,$(CurrentDir)/%,$(SourceFiles)) >> $(DEV_ROOT)/files.tmp
827  
828   statistics : $(PackageListLoop)
829          @$(List) $(DEV_ROOT)/files.tmp | xargs $(WordCount) $(WordCountOptions)
# Line 615 | Line 831 | $(Executable).pure :
831          $(Print) Done statistics.
832  
833   # make pure
834 < $(Executable).pure :
835 <        $(Purify) $(PurifyOptions) $(CppCompiler) $(LinkOptions) $(LibDirs) \
836 <        $(LibList) $(ObjectFiles) -o $@
834 > #$(Executable).pure :
835 > #       $(Purify) $(PurifyOptions) $(CppCompiler) $(LinkOptions) $(LibDirs) \
836 > #       $(LibList) $(ObjectFiles) -o $@
837 > #
838 > #pure : $(Executable).pure
839  
622 pure : $(Executable).pure
623
840   #make cvslog
841   cvslog:
842 <        $(DEV_ROOT)/scripts/cvs2cl.pl
842 >        $(DEV_ROOT)/scripts/cvs2cl
843  
844   # Execute
845   _runexe :

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