--- trunk/OOPSE-2.0/make/Makefile.in	2004/10/11 15:43:16	1552
+++ trunk/OOPSE-2.0/make/Makefile.in	2005/03/21 19:22:55	2126
@@ -38,25 +38,27 @@ PackageLibs = \
 #packages containing libraries
 PackageLibs = \
 	utils \
+	visitors \
 	math \
 	types \
 	primitives \
-	visitors \
 	UseTheForce/DarkSide \
 	UseTheForce \
 	brains \
 	io \
-	integrators \
-	minimizers \
+	integrators\
 	constraints \
-	profiling \
+	minimizers \
+	selection \
 	restraints \
 
 #packages containing applications
 Applications = \
 	applications/oopse \
 	applications/dump2Xyz \
-	applications/simpleBuilder
+        applications/simpleBuilder\
+	applications/staticProps \
+	applications/dynamicProps \
 
 Samples = \
 	samples/argon \
@@ -73,15 +75,12 @@ IncludeDirs = \
 	samples/zcons \
 
 IncludeDirs = \
-	@SPRNG_INC_DIR@ \
 	@MPI_INC_DIR@
 
 LibraryDirs = \
-	@SPRNG_LIB_DIR@ \
 	@MPI_LIB_DIR@ 
 
 Libraries = \
-	@SPRNG_LIB@ \
 	@MPI_LIB@ \
 	@MPI_F90_LIB@
 
@@ -125,7 +124,9 @@ Package          = $(subst $(shell cd $(SourceDir); pw
 # /home/maul/gezelter/src/code/src/UseTheForce/Darkside --> UseTheForce/Darkside
 #Package          = $(shell echo $(CurrentDir) | sed -e 's/^.*\/src\/\(.*\)/\1/g')
 #use shell script to get the absolute path and then rip it off from $(CurrentDir)
-Package          = $(subst $(shell cd $(SourceDir); pwd)/,,$(CurrentDir))
+#Package          = $(subst $(shell cd $(SourceDir); pwd)/,,$(CurrentDir))
+# REMINDER: We are now using the Package line in each subdir makefile.
+# This avoids the strange path problem and the subshell
 
 PackageList              = $(Package)
 PackageSourceDir         = $(SourceDir)/$(Package)
@@ -215,7 +216,7 @@ ifneq  "$(words $(ObjectFiles) $(ParallelObjectFiles))
 #if Main is defined, do not build library. It may not be true sometimes
 ifneq  "$(words $(ObjectFiles) $(ParallelObjectFiles))" "0"
   DependencyFile    = $(PackageSourceDir)/Makedepend
-  ifneq "$(Main)" ""
+  ifneq "$(words $(Main))" "0"
     Executable             = $(BinDir)/$(Main)
     ParallelExecutable     = $(BinDir)/$(Main)_MPI
   else
@@ -247,7 +248,7 @@ Move                   = mv
 #
 #---------------------------------------------------------------------------
 Print                  = @echo
-Move                   = mv
+Move                   = mv -f
 Copy                   = cp
 CCompiler              = @CC@
 CppCompiler            = @CXX@
@@ -255,8 +256,9 @@ InstallData            = @INSTALL_DATA@
 MakeDepend             = makedepend
 INSTALL                = @INSTALL@
 InstallProgram         = @INSTALL_PROGRAM@
+InstallScript          = @INSTALL_SCRIPT@
 InstallData            = @INSTALL_DATA@
-MkDir                = @MKINSTALLDIRS@
+MkDir                  = @MKINSTALLDIRS@
 Delete                 = rm -fr
 StaticArchiver         = @AR@
 DynamicArchiver        = @CC@
@@ -285,13 +287,13 @@ COptions               = $(FrcDeclare)
 JniOptions             =
 RmiOptions             = -d $(TargetDir) -classpath $(ClassPath) \
 			 -sourcepath $(SourceDir)
-COptions               = $(FrcDeclare)
-CParallelOptions       = $(FrcDeclare) $(ParallelDeclare)
-CppOptions             = $(FrcDeclare)
-CppParallelOptions     = $(FrcDeclare) $(ParallelDeclare)
+COptions               = $(FrcDeclare) @CFLAGS@
+CParallelOptions       = $(FrcDeclare) $(ParallelDeclare) @CFLAGS@
+CppOptions             = $(FrcDeclare) @CXXFLAGS@ @OOPSE_TEMPLATE_FLAGS@
+CppParallelOptions     = $(FrcDeclare) $(ParallelDeclare) @CXXFLAGS@ @OOPSE_TEMPLATE_FLAGS@
 FortranOptions         =
-F90Options             =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) -module $(TargetDir) 
-F90ParallelOptions     =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) -module $(ParallelTargetDir)  @PREPDEFFLAG@$(ParallelDeclare)
+F90Options             =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(TargetDir) 
+F90ParallelOptions     =  @PREPFLAG@ @F90FLAGS@ @MODDIRFLAG@$(SourceDir) @MODDIRFLAG@$(ParallelTargetDir)  @PREPDEFFLAG@$(ParallelDeclare)
 JavaCompilerOptions    = -d $(TargetDir) -classpath $(ClassPath) \
 			 -sourcepath $(SourceDir) -deprecation
 JavaRunOptions         = -classpath $(ClassPath) 
@@ -366,8 +368,11 @@ $(PackageTargetDir) :
 
 # Create target directory
 $(PackageTargetDir) :
-	$(MakeDir) $@
+	$(MkDir) $@
 
+$(BinDir) :
+	$(MkDir) $@
+
 # .c -> .o
 $(PackageTargetDir)/%.o : %.c
 	$(Print) $@
@@ -421,17 +426,34 @@ $(PackageTargetDir)/%.o : %.F90
 # .F90 -> .o
 $(PackageTargetDir)/%.o : %.F90
 	$(F90Compiler) $(F90Options) $(IncludePath) -c $< -o $@
+	if test -n "`ls *.$(ModSuffix)`"; then \
+	  $(Move) `ls *.$(ModSuffix)` $(PackageTargetDir);\
+	fi
 
 $(PackageParallelTargetDir)/%.o : %.F90
 	$(F90Compiler) $(F90ParallelOptions) $(IncludePath) -c $< -o $@
+	if test -n "`ls *.$(ModSuffix)`"; then \
+	  $(Move) "`ls *.$(ModSuffix)`" $(PackageParallelTargetDir);\
+	fi
 
 ifeq "$(UseMPI)" "yes"
 %.o : %.F90
 	$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
+	if test -n "`ls *.$(ModSuffix)`"; then\
+          $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
+        fi
+
 	$(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@
+	if test -n "`ls *.$(ModSuffix)`"; then\
+	  $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
+	fi
+
 else
 %.o : %.F90
 	$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@
+	if test -n "`ls *.$(ModSuffix)`"; then\
+          $(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\
+        fi
 endif
 
 
@@ -551,11 +573,11 @@ $(Executable) : $(CombinedStaticLib) $(ObjectFiles)
 	$(Ranlib) $(CombinedParallelStaticLib)
 
 # Executable
-$(Executable) : $(CombinedStaticLib) $(ObjectFiles)
-	$(Linker) $(ObjectFiles) $(LinkOptions) $(LibDirs) $(CombinedStaticLib) $(Libraries) -o $@
+$(Executable) : $(CombinedStaticLib) $(ObjectFiles) $(BinDir)
+	$(Linker) $(ObjectFiles) $(CombinedStaticLib) $(LinkOptions) $(LibDirs) $(Libraries) -o $@
 
-$(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles)
-	$(Linker) $(ParallelObjectFiles) $(ParallelLinkOptions) $(LibDirs) $(CombinedParallelStaticLib) $(Libraries) -o $@
+$(ParallelExecutable) : $(CombinedParallelStaticLib) $(ParallelObjectFiles) $(BinDir)
+	$(Linker) $(ParallelObjectFiles) $(CombinedParallelStaticLib) $(ParallelLinkOptions) $(LibDirs) $(Libraries) -o $@
 
 # Anything else is just copied from source to target
 $(PackageTargetDir)/% : $(PackageSourceDir)/%
@@ -604,25 +626,26 @@ _cleanall :
 	$(Print) Done clean.	
 
 _cleanall :
-	$(Delete) $(ObjectFiles) $(ParallelObjectFiles)
+	$(Delete) \
+		$(ObjectFiles) \
+		$(ParallelObjectFiles) \
+		$(JarFile) \
+		$(SharedLibrary) \
+		$(StaticLibrary) \
+		$(ParallelSharedLibrary) \
+		$(ParallelStaticLibrary) \
+		$(CombinedStaticLib) \
+		$(CombinedParallelStaticLib)
 
 # make distclean
 distclean : $(PackageListLoop)
 	$(Print) Done clean.	
 
-_distcleanall :
-	$(Delete) $(ObjectFiles) \
-	          $(ParallelObjectFiles) \
-		        $(JarFile) \
-	          $(SharedLibrary) \
-	          $(StaticLibrary) \
-	          $(ParallelSharedLibrary) \
-	          $(ParallelStaticLibrary) \
-	          $(Executable) \
+_distcleanall : _cleanall
+	$(Delete) $(Executable) \
 	          $(ParallelExecutable) \
 	          $(DependencyFile) 
 
-
 # make depend
 depend : $(PackageListLoop)
 	$(Print) Done dependencies.
@@ -634,28 +657,42 @@ ifneq "$(words $(CppFiles))" "0"
 	@cd $(PackageSourceDir)
 
 ifneq "$(words $(CppFiles))" "0"
-	$(CppCompiler) $(CppOptions) $(IncludePath) -MM $(CppFiles) > Make.cpptemp
-	@cat Make.cpptemp | sed 's/^[a-zA-Z0-9]/$$\(TargetDir\)\/&/g' >> $(DependencyFile)
+	$(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/' -MM $(CppFiles)>> Make.cpptemp
+	@cat Make.cpptemp  >> $(DependencyFile)
 	$(Delete) Make.cpptemp
-	$(CppCompiler) $(CppParallelOptions) $(IncludePath) -MM $(CppFiles) > Make.cpptemp
-	@cat Make.cpptemp | sed 's/^[a-zA-Z0-9]/$$\(ParallelTargetDir\)\/&/g' >> $(DependencyFile)
+
+  ifeq "$(UseMPI)" "yes"
+	$(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CppFiles)>> Make.cpptemp
+	@cat Make.cpptemp  >> $(DependencyFile)
 	@$(Delete) Make.cpptemp
+  endif
+
 endif
 
 ifneq "$(words $(CFiles))" "0" 
-	$(CCompiler) $(COptions) $(IncludePath) -MM $(CFiles) $(DerivedCFiles) > Make.ctemp
-	@cat Make.ctemp | sed 's/^[a-zA-Z0-9]/$$\(TargetDir\)\/&/g' >> $(DependencyFile)
+	$(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/'  -MM $(CFiles) $(DerivedCFiles)  >> Make.ctemp
+	@cat Make.ctemp  >> $(DependencyFile)
 	$(Delete) Make.ctemp
-	$(CCompiler) $(CParallelOptions) $(IncludePath) -MM $(CFiles) $(DerivedCFiles) > Make.ctemp
-	@cat Make.ctemp | sed 's/^[a-zA-Z0-9]/$$\(ParallelTargetDir\)\/&/g' >> $(DependencyFile)
+
+  ifeq "$(UseMPI)" "yes"
+	$(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) -MM $(CFiles) $(DerivedCFiles)  >> Make.ctemp
+	@cat Make.ctemp  >> $(DependencyFile)
 	@$(Delete) Make.ctemp
+  endif
+
 endif
 
 ifneq "$(words $(F90Files))" "0"
-	$(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/' $(F90Declare) -mc $(ModuleCase) -ms $(ModSuffix) $(F90Files) > Make.ftemp
-	$(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) $(F90Declare) -mc $(ModuleCase) -ms $(ModSuffix)  $(F90Files) >> Make.ftemp
+	$(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(TargetDir)/' $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix) $(F90Files) > Make.ftemp
 	@cat Make.ftemp >> $(DependencyFile)
 	@$(Delete) Make.ftemp
+
+  ifeq "$(UseMPI)" "yes"
+	$(DEV_ROOT)/scripts/filepp  -I $(DEV_ROOT)/src -od '$$(ParallelTargetDir)/' $(ParallelDeclare) $(F90Declare) -MM -mc $(ModuleCase) -ms $(ModSuffix)  $(F90Files) >> Make.ftemp
+	@cat Make.ftemp >> $(DependencyFile)
+	@$(Delete) Make.ftemp
+  endif
+
 endif
 
 # make lib
@@ -684,9 +721,9 @@ ifneq "$(words $(InstallFiles))" "0"
 _installdata :  $(MyInstallDir)
 	$(Print) $(InstallFiles) 
 ifneq "$(words $(InstallFiles))" "0"
-	$(InstallData) $(InstallFiles) $(MyInstallDir)
+	$(InstallCommand) $(InstallFiles) $(MyInstallDir)
 endif	    
-	
+
 # make statistics
 _statisticsall :
 	@$(Print) $(patsubst %,$(CurrentDir)/%,$(SourceFiles)) >> $(DEV_ROOT)/files.tmp