49 |
|
integrators\ |
50 |
|
constraints \ |
51 |
|
minimizers \ |
52 |
+ |
selection \ |
53 |
+ |
restraints \ |
54 |
+ |
lattice \ |
55 |
|
|
56 |
|
#packages containing applications |
57 |
|
Applications = \ |
58 |
|
applications/oopse \ |
59 |
|
applications/dump2Xyz \ |
60 |
+ |
applications/staticProps \ |
61 |
+ |
applications/dynamicProps \ |
62 |
|
applications/simpleBuilder\ |
63 |
+ |
applications/nanoRodBuilder \ |
64 |
|
|
65 |
|
Samples = \ |
66 |
|
samples/argon \ |
67 |
< |
samples/water/dimer \ |
67 |
> |
samples/water/dimer \ |
68 |
|
samples/water/spce \ |
69 |
|
samples/water/ssd \ |
70 |
|
samples/water/ssde \ |
71 |
+ |
samples/water/ssdrf \ |
72 |
+ |
samples/water/ssd-ion \ |
73 |
|
samples/water/tip3p_ice \ |
74 |
|
samples/water/tip4p \ |
75 |
|
samples/lipid \ |
76 |
|
samples/alkane \ |
77 |
|
samples/minimizer \ |
78 |
|
samples/metals \ |
79 |
+ |
samples/thermoIntegration/liquid \ |
80 |
+ |
samples/thermoIntegration/solid \ |
81 |
+ |
samples/dipole \ |
82 |
+ |
samples/shape \ |
83 |
|
samples/zcons \ |
84 |
|
|
85 |
|
IncludeDirs = \ |
86 |
< |
@SPRNG_INC_DIR@ \ |
87 |
< |
@MPI_INC_DIR@ |
86 |
> |
@CGAL_INC_DIR@ \ |
87 |
> |
@MPI_INC_DIR@ |
88 |
|
|
89 |
|
LibraryDirs = \ |
90 |
< |
@SPRNG_LIB_DIR@ \ |
90 |
> |
@CGAL_LIB_DIR@ \ |
91 |
|
@MPI_LIB_DIR@ |
92 |
|
|
93 |
|
Libraries = \ |
94 |
< |
@SPRNG_LIB@ \ |
94 |
> |
@CGAL_LIBS@ \ |
95 |
|
@MPI_LIB@ \ |
96 |
< |
@MPI_F90_LIB@ |
96 |
> |
@MPI_F90_LIB@ |
97 |
|
|
98 |
|
OopseHome = @OOPSE_HOME@ |
99 |
|
ForceParamDir = $(OopseHome)/share/forceFields |
124 |
|
ParallelTargetDir = $(DEV_ROOT)/MPIobj |
125 |
|
LibDir = $(DEV_ROOT)/lib |
126 |
|
MakeDir = $(DEV_ROOT)/make |
127 |
+ |
MainMakefile = $(MakeDir)/Makefile |
128 |
|
BinDir = $(DEV_ROOT)/bin |
129 |
|
DocsDir = $(DEV_ROOT)/docs |
130 |
|
CurrentDir = $(CURDIR) |
216 |
|
$(LexFiles:%.l= %.c) |
217 |
|
|
218 |
|
OtherTargetFiles = $(OtherSourceFiles:%=$(PackageTargetDir)/%) |
219 |
+ |
|
220 |
+ |
########################################################################### |
221 |
+ |
# |
222 |
+ |
# Figure out the names of the module files based on some work done by |
223 |
+ |
# configure. The tr function below is from John Graham-Cumming |
224 |
+ |
# (http://www.jgc.org). |
225 |
+ |
# |
226 |
+ |
# The tr function. Has three arguments: |
227 |
+ |
# |
228 |
+ |
# $1 The list of characters to translate from |
229 |
+ |
# $2 The list of characters to translate to |
230 |
+ |
# $3 The text to translate |
231 |
+ |
# |
232 |
+ |
# For example, $(call tr,A B C,1 2 3,CAPITAL) becomes 21PIT1L. |
233 |
+ |
|
234 |
+ |
tr = $(eval __t := $3) \ |
235 |
+ |
$(foreach c, \ |
236 |
+ |
$(join $(addsuffix :,$1),$2), \ |
237 |
+ |
$(eval __t := \ |
238 |
+ |
$(subst $(word 1,$(subst :, ,$c)),$(word 2,$(subst :, ,$c)), \ |
239 |
+ |
$(__t))))$(__t) |
240 |
+ |
|
241 |
+ |
# Common character classes for use with the tr function. Each of |
242 |
+ |
# these is actually a variable declaration and must be wrapped with |
243 |
+ |
# $() or ${} to be used. |
244 |
+ |
|
245 |
+ |
[A-Z] := A B C D E F G H I J K L M N O P Q R S T U V W X Y Z # |
246 |
+ |
[a-z] := a b c d e f g h i j k l m n o p q r s t u v w x y z # |
247 |
+ |
[0-9] := 0 1 2 3 4 5 6 7 8 9 # |
248 |
+ |
[A-F] := A B C D E F # |
249 |
+ |
|
250 |
+ |
# Figure out whether we have $(eval) or not (GNU Make 3.80 and above) |
251 |
+ |
# if we do not then we need to use the shell version of tr, and not the |
252 |
+ |
# faster tr function above: |
253 |
+ |
|
254 |
+ |
__have_eval := $(false) |
255 |
+ |
__ignore := $(eval __have_eval := $(true)) |
256 |
+ |
|
257 |
+ |
ifndef __have_eval |
258 |
+ |
uc = $(shell echo $1 | tr "a-z" "A-Z") |
259 |
+ |
lc = $(shell echo $1 | tr "A-Z" "a-z") |
260 |
+ |
else |
261 |
+ |
uc = $(call tr,$([a-z]),$([A-Z]),$1) |
262 |
+ |
lc = $(call tr,$([A-Z]),$([a-z]),$1) |
263 |
+ |
endif |
264 |
+ |
|
265 |
+ |
# OK, now we can actually use these functions to figure out the names |
266 |
+ |
# of the module files: |
267 |
+ |
|
268 |
+ |
ifneq "$(words $(Modules))" "0" |
269 |
+ |
ifeq "$(ModuleCase)" "UPPER" |
270 |
+ |
MODULES = $(call uc,$(Modules)) |
271 |
+ |
else |
272 |
+ |
ifeq "$(ModuleCase)" "lower" |
273 |
+ |
MODULES = $(call lc,$(Modules)) |
274 |
+ |
else |
275 |
+ |
MODULES = $(Modules) |
276 |
+ |
endif |
277 |
+ |
endif |
278 |
+ |
ModuleFiles = $(MODULES:%= $(PackageTargetDir)/%.$(ModSuffix)) |
279 |
+ |
ParallelModuleFiles = $(MODULES:%= $(PackageParallelTargetDir)/%.$(ModSuffix)) |
280 |
+ |
endif |
281 |
+ |
# |
282 |
+ |
########################################################################### |
283 |
|
|
284 |
|
ThirdPartyJarsTmp = $(patsubst %,$(LibDir)/%,$(JavaLibraries)) |
285 |
|
ThirdPartyJars = $(subst $(Space),$(X),$(ThirdPartyJarsTmp)) |
292 |
|
#if Main is defined, do not build library. It may not be true sometimes |
293 |
|
ifneq "$(words $(ObjectFiles) $(ParallelObjectFiles))" "0" |
294 |
|
DependencyFile = $(PackageSourceDir)/Makedepend |
295 |
< |
ifneq "$(Main)" "" |
295 |
> |
ifneq "$(words $(Main))" "0" |
296 |
|
Executable = $(BinDir)/$(Main) |
297 |
< |
ParallelExecutable = $(BinDir)/$(Main)_MPI |
297 |
> |
ifeq "$(BuiltParallelExe)" "1" |
298 |
> |
ParallelExecutable = $(BinDir)/$(Main)_MPI |
299 |
> |
endif |
300 |
|
else |
301 |
|
SharedLibrary = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.so |
302 |
|
StaticLibrary = $(LibDir)/lib$(subst /,,$(patsubst %,oopse_%,$(Package)))_UP.a |
334 |
|
MakeDepend = makedepend |
335 |
|
INSTALL = @INSTALL@ |
336 |
|
InstallProgram = @INSTALL_PROGRAM@ |
337 |
+ |
InstallScript = @INSTALL_SCRIPT@ |
338 |
|
InstallData = @INSTALL_DATA@ |
339 |
|
MkDir = @MKINSTALLDIRS@ |
340 |
< |
Delete = rm -fr |
340 |
> |
Delete = rm -f |
341 |
|
StaticArchiver = @AR@ |
342 |
|
DynamicArchiver = @CC@ |
343 |
|
FortranCompiler = @FC@ |
452 |
|
$(MkDir) $@ |
453 |
|
|
454 |
|
# .c -> .o |
455 |
< |
$(PackageTargetDir)/%.o : %.c |
455 |
> |
$(PackageTargetDir)/%.o : %.c $(MainMakefile) |
456 |
|
$(Print) $@ |
457 |
|
$(CCompiler) $(COptions) -c $(IncludePath) $< -o $@ |
458 |
|
|
459 |
< |
$(PackageParallelTargetDir)/%.o : %.c |
459 |
> |
$(PackageParallelTargetDir)/%.o : %.c $(MainMakefile) |
460 |
|
$(Print) $@ |
461 |
|
$(CCompiler) $(CParallelOptions) -c $(IncludePath) $< -o $@ |
462 |
|
|
463 |
|
ifeq "$(UseMPI)" "yes" |
464 |
< |
%.o : %.c |
464 |
> |
%.o : %.c $(MainMakefile) |
465 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
466 |
|
$(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@ |
467 |
|
else |
468 |
< |
%.o : %.c |
468 |
> |
%.o : %.c $(MainMakefile) |
469 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
470 |
|
endif |
471 |
|
|
472 |
|
# .cpp -> .o |
473 |
< |
$(PackageTargetDir)/%.o : %.cpp |
473 |
> |
$(PackageTargetDir)/%.o : %.cpp $(MainMakefile) |
474 |
|
$(CppCompiler) $(CppOptions) -c $(IncludePath) $< -o $@ |
475 |
|
|
476 |
< |
$(PackageParallelTargetDir)/%.o : %.cpp |
476 |
> |
$(PackageParallelTargetDir)/%.o : %.cpp $(MainMakefile) |
477 |
|
$(CppCompiler) $(CppParallelOptions) -c $(IncludePath) $< -o $@ |
478 |
|
|
479 |
|
ifeq "$(UseMPI)" "yes" |
480 |
< |
%.o : %.cpp |
480 |
> |
%.o : %.cpp $(MainMakefile) |
481 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
482 |
|
$(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@ |
483 |
|
else |
484 |
< |
%.o : %.cpp |
484 |
> |
%.o : %.cpp $(MainMakefile) |
485 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
486 |
|
endif |
487 |
|
|
488 |
|
# .f -> .o |
489 |
< |
$(PackageTargetDir)/%.o : %.f |
489 |
> |
$(PackageTargetDir)/%.o : %.f $(MainMakefile) |
490 |
|
$(FortranCompiler) $(FortranOptions) -c $< -o $@ |
491 |
|
|
492 |
< |
$(PackageParallelTargetDir)/%.o : %.f |
492 |
> |
$(PackageParallelTargetDir)/%.o : %.f $(MainMakefile) |
493 |
|
$(FortranCompiler) $(FortranParallelOptions) -c $< -o $@ |
494 |
|
|
495 |
|
ifeq "$(UseMPI)" "yes" |
496 |
< |
%.o : %.f |
496 |
> |
%.o : %.f $(MainMakefile) |
497 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
498 |
|
$(MAKE) $(MakeOptions) $(PackageParallelTargetDir)/$@ |
499 |
|
else |
500 |
< |
%.o : %.f |
500 |
> |
%.o : %.f $(MainMakefile) |
501 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
502 |
|
endif |
503 |
|
|
504 |
|
# .F90 -> .o |
505 |
< |
$(PackageTargetDir)/%.o : %.F90 |
505 |
> |
$(PackageTargetDir)/%.o : %.F90 $(MainMakefile) |
506 |
|
$(F90Compiler) $(F90Options) $(IncludePath) -c $< -o $@ |
507 |
|
if test -n "`ls *.$(ModSuffix)`"; then \ |
508 |
|
$(Move) `ls *.$(ModSuffix)` $(PackageTargetDir);\ |
509 |
|
fi |
510 |
|
|
511 |
< |
$(PackageParallelTargetDir)/%.o : %.F90 |
511 |
> |
$(PackageParallelTargetDir)/%.o : %.F90 $(MainMakefile) |
512 |
|
$(F90Compiler) $(F90ParallelOptions) $(IncludePath) -c $< -o $@ |
513 |
|
if test -n "`ls *.$(ModSuffix)`"; then \ |
514 |
|
$(Move) "`ls *.$(ModSuffix)`" $(PackageParallelTargetDir);\ |
515 |
|
fi |
516 |
|
|
517 |
|
ifeq "$(UseMPI)" "yes" |
518 |
< |
%.o : %.F90 |
518 |
> |
%.o : %.F90 $(MainMakefile) |
519 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
520 |
|
if test -n "`ls *.$(ModSuffix)`"; then\ |
521 |
|
$(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\ |
527 |
|
fi |
528 |
|
|
529 |
|
else |
530 |
< |
%.o : %.F90 |
530 |
> |
%.o : %.F90 $(MainMakefile) |
531 |
|
$(MAKE) $(MakeOptions) $(PackageTargetDir)/$@ |
532 |
|
if test -n "`ls *.$(ModSuffix)`"; then\ |
533 |
|
$(Move) "`ls *.$(ModSuffix)`" $(PackageTargetDir);\ |
698 |
|
$(Executable) |
699 |
|
endif |
700 |
|
|
701 |
+ |
echo : $(PackageListLoop) |
702 |
+ |
$(Print) Done echo. |
703 |
|
|
704 |
+ |
_echoall : |
705 |
+ |
$(Print) $(Modules) |
706 |
+ |
|
707 |
|
# make clean |
708 |
|
clean : $(PackageListLoop) |
709 |
|
$(Print) Done clean. |
710 |
|
|
711 |
|
_cleanall : |
712 |
< |
$(Delete) $(ObjectFiles) $(ParallelObjectFiles) |
712 |
> |
$(Delete) \ |
713 |
> |
$(ObjectFiles) \ |
714 |
> |
$(ModuleFiles) \ |
715 |
> |
$(ParallelObjectFiles) \ |
716 |
> |
$(ParallelModuleFiles) \ |
717 |
> |
$(JarFile) \ |
718 |
> |
$(SharedLibrary) \ |
719 |
> |
$(StaticLibrary) \ |
720 |
> |
$(ParallelSharedLibrary) \ |
721 |
> |
$(ParallelStaticLibrary) \ |
722 |
> |
$(CombinedStaticLib) \ |
723 |
> |
$(CombinedParallelStaticLib) |
724 |
|
|
725 |
|
# make distclean |
726 |
|
distclean : $(PackageListLoop) |
727 |
|
$(Print) Done clean. |
728 |
|
|
729 |
< |
_distcleanall : |
730 |
< |
$(Delete) $(ObjectFiles) \ |
635 |
< |
$(ParallelObjectFiles) \ |
636 |
< |
$(JarFile) \ |
637 |
< |
$(SharedLibrary) \ |
638 |
< |
$(StaticLibrary) \ |
639 |
< |
$(ParallelSharedLibrary) \ |
640 |
< |
$(ParallelStaticLibrary) \ |
641 |
< |
$(Executable) \ |
729 |
> |
_distcleanall : _cleanall |
730 |
> |
$(Delete) $(Executable) \ |
731 |
|
$(ParallelExecutable) \ |
732 |
|
$(DependencyFile) |
733 |
|
|
645 |
– |
|
734 |
|
# make depend |
735 |
|
depend : $(PackageListLoop) |
736 |
|
$(Print) Done dependencies. |
806 |
|
_installdata : $(MyInstallDir) |
807 |
|
$(Print) $(InstallFiles) |
808 |
|
ifneq "$(words $(InstallFiles))" "0" |
809 |
< |
$(InstallData) $(InstallFiles) $(MyInstallDir) |
809 |
> |
$(InstallCommand) $(InstallFiles) $(MyInstallDir) |
810 |
|
endif |
811 |
|
|
812 |
|
# make statistics |
827 |
|
|
828 |
|
#make cvslog |
829 |
|
cvslog: |
830 |
< |
$(DEV_ROOT)/scripts/cvs2cl.pl |
830 |
> |
$(DEV_ROOT)/scripts/cvs2cl |
831 |
|
|
832 |
|
# Execute |
833 |
|
_runexe : |