fix a typo in DumpReader
DumpReader using pure c++ io
Fix a bug in DumpReader in case readFrame is called without calling getNFrames
xemacs has been drafted to perform our indentation services
First commit of the new restraints code
Fixing a bug in BitSet.cpp
adding MersenneTwister random number generator
adding dynamicProps
fix a bug in SimInfo, use number of cutoff stamp as counter to loop over rigidbody stamp
(1) complete section parser's error message (2) add GhostTorsion (3) accumulate inertial tensor from the directional atoms before calculate rigidbody's inertial tensor
merging new_design branch into OOPSE-2.0
replace old GebericData with new GenericData
change the #include in source files
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