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Comparing trunk/OOPSE-2.0/src/io/Globals.hpp (file contents):
Revision 1490 by gezelter, Fri Sep 24 04:16:43 2004 UTC vs.
Revision 2101 by chrisfen, Thu Mar 10 15:10:24 2005 UTC

# Line 1 | Line 1
1 < #ifndef __GLOBALS_H__
2 < #define __GLOBALS_H__
1 > /*
2 > * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3 > *
4 > * The University of Notre Dame grants you ("Licensee") a
5 > * non-exclusive, royalty free, license to use, modify and
6 > * redistribute this software in source and binary code form, provided
7 > * that the following conditions are met:
8 > *
9 > * 1. Acknowledgement of the program authors must be made in any
10 > *    publication of scientific results based in part on use of the
11 > *    program.  An acceptable form of acknowledgement is citation of
12 > *    the article in which the program was described (Matthew
13 > *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14 > *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15 > *    Parallel Simulation Engine for Molecular Dynamics,"
16 > *    J. Comput. Chem. 26, pp. 252-271 (2005))
17 > *
18 > * 2. Redistributions of source code must retain the above copyright
19 > *    notice, this list of conditions and the following disclaimer.
20 > *
21 > * 3. Redistributions in binary form must reproduce the above copyright
22 > *    notice, this list of conditions and the following disclaimer in the
23 > *    documentation and/or other materials provided with the
24 > *    distribution.
25 > *
26 > * This software is provided "AS IS," without a warranty of any
27 > * kind. All express or implied conditions, representations and
28 > * warranties, including any implied warranty of merchantability,
29 > * fitness for a particular purpose or non-infringement, are hereby
30 > * excluded.  The University of Notre Dame and its licensors shall not
31 > * be liable for any damages suffered by licensee as a result of
32 > * using, modifying or distributing the software or its
33 > * derivatives. In no event will the University of Notre Dame or its
34 > * licensors be liable for any lost revenue, profit or data, or for
35 > * direct, indirect, special, consequential, incidental or punitive
36 > * damages, however caused and regardless of the theory of liability,
37 > * arising out of the use of or inability to use software, even if the
38 > * University of Notre Dame has been advised of the possibility of
39 > * such damages.
40 > */
41 >
42 > #ifndef IO_GLOBALS_HPP
43 > #define IO_GLOBALS_HPP
44  
45   #include <iostream>
46  
47   #include <stdlib.h>
48   #include <vector>
49  
50 < #include "BASS_interface.h"
51 < #include "Component.hpp"
52 < #include "LinkedCommand.hpp"
53 < #include "MakeStamps.hpp"
54 < #include "ZconStamp.hpp"
50 > #include "io/BASS_interface.h"
51 > #include "types/Component.hpp"
52 > #include "io/LinkedCommand.hpp"
53 > #include "types/MakeStamps.hpp"
54 > #include "types/ZconStamp.hpp"
55  
15 using namespace std;
56  
57 +
58   class Globals{
59    
60   public:
# Line 85 | Line 126 | class Globals{ (public)
126    int    getMinLSMaxIter(void)      { return minimizer_ls_maxiteration; }
127    int    getUseSolidThermInt(void)  { return useSolidThermInt; }
128    int    getUseLiquidThermInt(void) { return useLiquidThermInt; }
129 <  double getThermIntLambda(void)    { return thermodynamic_integration_lambda; }
129 >  double getThermIntLambda(void)   { return thermodynamic_integration_lambda; }
130    double getThermIntK(void)         { return thermodynamic_integration_k; }
131    char*  getForceFieldVariant( void ) { return forcefield_variant; }
132 <
132 >  char* getForceFieldFileName() { return forcefield_filename;}
133 >  double getDistSpringConst(void)   { return therm_int_dist_spring; }
134 >  double getThetaSpringConst(void)  { return therm_int_theta_spring; }
135 >  double getOmegaSpringConst(void)  { return therm_int_omega_spring; }
136    short int haveDt( void )            { return have_dt; }
137    short int haveRunTime( void )       { return have_run_time; }
138    short int haveEnsemble( void )      { return have_ensemble; }
# Line 130 | Line 174 | class Globals{ (public)
174    short int haveMinLSTol(void)        { return have_minimizer_ls_tol; }
175    short int haveMinLSMaxIter(void)    { return have_minimizer_ls_maxiteration;}
176    short int haveThermIntLambda(void)  { return have_thermodynamic_integration_lambda; }
177 <  short int haveThermIntK(void)       { return have_thermodynamic_integration_k; }
177 >  short int haveThermIntK(void)    { return have_thermodynamic_integration_k; }
178    short int haveForceFieldVariant(void) { return have_forcefield_variant; }
179 <
179 >  short int haveForceFieldFileName(void) { return have_forcefield_filename; }
180 >  short int haveDistSpringConst(void) { return have_dist_spring_constant; }
181 >  short int haveThetaSpringConst(void) { return have_theta_spring_constant; }
182 >  short int haveOmegaSpringConst(void) { return have_omega_spring_constant; }
183    /* other accessors */
184    Component** getComponents( void )   { return components; }
185    ZconStamp** getZconStamp( void )    { return zConstraints; }
# Line 205 | Line 252 | class Globals{ (public)
252    double thermodynamic_integration_lambda;
253    double thermodynamic_integration_k;
254    char forcefield_variant[100];
255 <
255 >  char forcefield_filename[100];
256 >  double therm_int_dist_spring;
257 >  double therm_int_theta_spring;
258 >  double therm_int_omega_spring;
259    //required arguments
260    short int have_force_field, have_n_components, have_target_temp;
261    short int have_target_pressure, have_ensemble, have_dt, have_run_time;
# Line 228 | Line 278 | class Globals{ (public)
278    short int have_thermodynamic_integration_lambda;
279    short int have_thermodynamic_integration_k;
280    short int have_forcefield_variant;
281 +  short int have_forcefield_filename;  
282 +  short int have_dist_spring_constant;
283 +  short int have_theta_spring_constant;
284 +  short int have_omega_spring_constant;
285   };
286  
287   #endif

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