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/* |
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* Copyright (C) 2000-2004 Object Oriented Parallel Simulation Engine (OOPSE) project |
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* |
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* Contact: oopse@oopse.org |
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* |
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* This program is free software; you can redistribute it and/or |
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* modify it under the terms of the GNU Lesser General Public License |
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* as published by the Free Software Foundation; either version 2.1 |
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* of the License, or (at your option) any later version. |
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* All we ask is that proper credit is given for our work, which includes |
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* - but is not limited to - adding the above copyright notice to the beginning |
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* of your source code files, and to any copyright notice that you may distribute |
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* with programs based on this work. |
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* |
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* This program is distributed in the hope that it will be useful, |
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* but WITHOUT ANY WARRANTY; without even the implied warranty of |
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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* GNU Lesser General Public License for more details. |
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* |
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* You should have received a copy of the GNU Lesser General Public License |
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* along with this program; if not, write to the Free Software |
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* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. |
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/* |
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* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. |
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* |
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* The University of Notre Dame grants you ("Licensee") a |
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* non-exclusive, royalty free, license to use, modify and |
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* redistribute this software in source and binary code form, provided |
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* that the following conditions are met: |
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* |
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* 1. Acknowledgement of the program authors must be made in any |
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* publication of scientific results based in part on use of the |
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* program. An acceptable form of acknowledgement is citation of |
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* the article in which the program was described (Matthew |
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* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
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* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
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* Parallel Simulation Engine for Molecular Dynamics," |
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* J. Comput. Chem. 26, pp. 252-271 (2005)) |
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* |
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* 2. Redistributions of source code must retain the above copyright |
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* notice, this list of conditions and the following disclaimer. |
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* |
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* 3. Redistributions in binary form must reproduce the above copyright |
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* notice, this list of conditions and the following disclaimer in the |
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* documentation and/or other materials provided with the |
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* distribution. |
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* |
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* This software is provided "AS IS," without a warranty of any |
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* kind. All express or implied conditions, representations and |
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* warranties, including any implied warranty of merchantability, |
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* fitness for a particular purpose or non-infringement, are hereby |
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* excluded. The University of Notre Dame and its licensors shall not |
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* be liable for any damages suffered by licensee as a result of |
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* using, modifying or distributing the software or its |
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* derivatives. In no event will the University of Notre Dame or its |
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* licensors be liable for any lost revenue, profit or data, or for |
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* direct, indirect, special, consequential, incidental or punitive |
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* damages, however caused and regardless of the theory of liability, |
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* arising out of the use of or inability to use software, even if the |
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* University of Notre Dame has been advised of the possibility of |
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* such damages. |
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*/ |
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/** |
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* @file basic_ifstrstream.hpp |
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* @author Teng Lin |
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#ifndef IO_IFSTRSTREAM_HPP |
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#define IO_IFSTRSTREAM_HPP |
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#include <cassert> |
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#include <cstring> |
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#include <fstream> |
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#include <sstream> |
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#endif |
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namespace oopse { |
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using namespace std; |
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|
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/** |
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* @class basic_ifstrstream basic_ifstrstream.hpp "io/basic_ifstrstream.hpp" |
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* @brief class provides a stream interface to read data from files. |
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* @brief basic_ifstrstream class provides a stream interface to read data from files. |
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* <p>In single mode, it falls back to ifstream. Don't need to read the whole file into memory. |
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* In parallel mode, the master node will read the whole file and brocast it to other slave nodes. |
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* After brocasting, every node will fall back to stringstream.</p> |
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* @endcode |
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*/ |
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template <class _CharT, class _Traits, class _Alloc> |
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class basic_ifstrstream : public basic_istream<_CharT, _Traits> { |
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class basic_ifstrstream : public std::basic_istream<_CharT, _Traits> { |
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public: |
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//traits |
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typedef _CharT char_type; |
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typedef typename _Traits::off_type off_type; |
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typedef _Traits traits_type; |
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typedef basic_ios<_CharT, _Traits> _Basic_ios; |
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typedef basic_istream<_CharT, _Traits> _Base; |
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typedef std::basic_ios<_CharT, _Traits> _Basic_ios; |
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typedef std::basic_istream<_CharT, _Traits> _Base; |
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#ifdef IS_MPI |
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typedef basic_stringbuf<_CharT, _Traits, _Alloc> _Buf; |
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typedef std::basic_stringbuf<_CharT, _Traits, _Alloc> _Buf; |
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#else |
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typedef basic_filebuf<_CharT, _Traits> _Buf; |
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typedef std::basic_filebuf<_CharT, _Traits> _Buf; |
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#endif |
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static const int FileNoExists = -1; |
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static const int FileNotExists = -1; |
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static const int FileIOError = -2; |
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public: |
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/** Constructs an object of class ifstream. */ |
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basic_ifstrstream() |
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: basic_ios<_CharT, _Traits>(), basic_istream<_CharT, _Traits>(0), |
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: std::basic_ios<_CharT, _Traits>(), std::basic_istream<_CharT, _Traits>(0), |
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internalBuf_(NULL), isRead(false) { |
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#ifdef IS_MPI |
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//in parallel mode, fall back to istringstream |
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basic_stringbuf<_CharT, _Traits, _Alloc>* stringBuffer = new basic_stringbuf<_CharT, _Traits, _Alloc>(); |
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std::basic_stringbuf<_CharT, _Traits, _Alloc>* stringBuffer = new std::basic_stringbuf<_CharT, _Traits, _Alloc>(); |
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internalBuf_ = stringBuffer; |
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#else |
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//in single version, fall back to ifstream |
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basic_filebuf<_CharT, _Traits>* fileBuffer = new basic_filebuf<_CharT, _Traits>(); |
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std::basic_filebuf<_CharT, _Traits>* fileBuffer = new std::basic_filebuf<_CharT, _Traits>(); |
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internalBuf_ = fileBuffer; |
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#endif |
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* @mode Flags describing the requested i/o mode for the file, default value is ios_base::in |
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* @checkFilename Flags indicating checking the file name in parallel |
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*/ |
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explicit basic_ifstrstream(const char* filename, ios_base::openmode mode = ios_base::in, bool checkFilename = false) |
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: basic_ios<_CharT, _Traits>(), basic_istream<_CharT, _Traits>(0), |
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explicit basic_ifstrstream(const char* filename, std::ios_base::openmode mode = std::ios_base::in, bool checkFilename = false) |
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: std::basic_ios<_CharT, _Traits>(), std::basic_istream<_CharT, _Traits>(0), |
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internalBuf_(NULL), isRead(false) { |
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isRead = internalOpen(filename, mode | ios_base::in, checkFilename); |
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isRead = internalOpen(filename, mode | std::ios_base::in, checkFilename); |
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} |
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/** |
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* @mode Flags describing the requested i/o mode for the file |
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* @checkFilename Flags indicating checking the file name in parallel |
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*/ |
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void open(const char* filename, ios_base::openmode mode = ios_base::in, bool checkFilename = false){ |
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void open(const char* filename, std::ios_base::openmode mode = std::ios_base::in, bool checkFilename = false){ |
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if (!isRead ) { |
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isRead = internalOpen(filename, mode, checkFilename); |
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#ifndef IS_MPI |
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//single version fall back to ifstream |
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if (!this->rdbuf()->close()) |
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this->setstate(ios_base::failbit); |
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this->setstate(std::ios_base::failbit); |
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#endif |
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isRead = false; |
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* parallel mode) associated with the stream. |
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*/ |
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_Buf* rdbuf() const{ |
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return const_cast<_Buf*>(internalBuf_); |
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return static_cast<_Buf*>(internalBuf_); |
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} |
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private: |
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* @mode Flags describing the requested i/o mode for the file |
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* @todo use try - catch syntax to make the program more readable |
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*/ |
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bool internalOpen(const char* filename, ios_base::openmode mode, bool checkFilename){ |
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bool internalOpen(const char* filename, std::ios_base::openmode mode, bool checkFilename){ |
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#ifdef IS_MPI |
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int commStatus; |
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//check the filename is the same |
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filenameLen = strlen(filename); |
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commStatus = MPI_Bcast(filenameLen, 1, MPI_INT, masterNode, MPI_COMM_WORLD); |
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commStatus = MPI_Bcast(filename, filenameLen, MPI_CHAR, masterNode, MPI_COMM_WORLD); |
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commStatus = MPI_Bcast(&filenameLen, 1, MPI_INT, masterNode, MPI_COMM_WORLD); |
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commStatus = MPI_Bcast((void*)filename, filenameLen, MPI_CHAR, masterNode, MPI_COMM_WORLD); |
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diffFilename = 0; |
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commStatus = MPI_Allreduce(diffFilename, error, 1, MPI_INT, MPI_COMM_WORLD); |
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commStatus = MPI_Allreduce(&diffFilename, &error, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD); |
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//if file names are different just return false |
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if (error > 0) |
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return false; |
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} |
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ifstream fin(filename, mode); |
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basic_stringbuf<_CharT, _Traits, _Alloc>* sbuf; |
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std::ifstream fin(filename, mode); |
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std::basic_stringbuf<_CharT, _Traits, _Alloc>* sbuf; |
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if (fin.is_open()) { |
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fin.in.seekg(0, ios::end); |
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fin.seekg(0, std::ios::end); |
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fileSize = fin.tellg(); |
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fin.seekg(0, std::ios::beg); |
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// '\0' need one more char |
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fbuf = new char[fileSize+1]; |
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return false; |
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} |
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// make a c-style string and brocasting it |
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// make a c-style std::string and brocasting it |
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fbuf[fileSize] = '\0'; |
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commStatus = MPI_Bcast(fbuf, fileSize + 1, MPI_CHAR, masterNode, MPI_COMM_WORLD); |
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delete internalBuf_; |
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//initilaize istream |
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internalBuf_ = new basic_stringbuf<_CharT, _Traits, _Alloc>(fbuf, mode); |
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internalBuf_ = new std::basic_stringbuf<_CharT, _Traits, _Alloc>(fbuf, mode); |
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assert(internalBuf_); |
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this->init(internalBuf_); |
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fin.close(); |
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delete fbuf; |
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}else{ |
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fileSize = FileNoExists; |
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fileSize = FileNotExists; |
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commStatus = MPI_Bcast(&fileSize, 1, MPI_LONG, masterNode, MPI_COMM_WORLD); |
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return false; |
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} |
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} else{ |
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} else{ //slave nodes |
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|
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//check file name |
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if (checkFilename) { |
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commStatus = MPI_Bcast(filenameLen, 1, MPI_INT, masterNode, MPI_COMM_WORLD); |
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commStatus = MPI_Bcast(&filenameLen, 1, MPI_INT, masterNode, MPI_COMM_WORLD); |
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char * masterFilename = new char[filenameLen]; |
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commStatus = MPI_Bcast(masterFilename, filenameLen, MPI_CHAR, masterNode, MPI_COMM_WORLD); |
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delete masterFilename; |
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commStatus = MPI_Allreduce(diffFilename, error, 1, MPI_INT, MPI_COMM_WORLD); |
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commStatus = MPI_Allreduce(&diffFilename, &error, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD); |
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if (error > 0) |
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return false; |
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delete internalBuf_; |
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//initilaize istream |
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internalBuf_ = new basic_stringbuf<_CharT, _Traits, _Alloc>(fbuf, mode); |
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internalBuf_ = new std::basic_stringbuf<_CharT, _Traits, _Alloc>(fbuf, mode); |
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assert(internalBuf_); |
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this->init(internalBuf_); |
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delete fbuf; |
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} else if (fileSize == FileNoExists ) { |
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} else if (fileSize == FileNotExists ) { |
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return false; |
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} else if (fileSize == FileIOError ) { |
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#else |
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//in single version, fall back to ifstream |
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basic_filebuf<_CharT, _Traits>* fileBuffer = new basic_filebuf<_CharT, _Traits>(); |
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std::basic_filebuf<_CharT, _Traits>* fileBuffer = new std::basic_filebuf<_CharT, _Traits>(); |
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|
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this->init(fileBuffer); |
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if (!fileBuffer->open(filename, mode)) |
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this->setstate(ios_base::failbit); |
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//it is safe to delete null pointer |
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delete internalBuf_; |
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|
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internalBuf_ = fileBuffer; |
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delete internalBuf_; |
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internalBuf_ = fileBuffer; |
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|
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this->init(internalBuf_); |
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if (!fileBuffer->open(filename, mode)) { |
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this->setstate(std::ios_base::failbit); |
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return false; |
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} |
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|
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#endif |
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return true; |
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} |
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basic_streambuf<_CharT, _Traits>* internalBuf_; /** internal stream buffer */ |
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std::basic_streambuf<_CharT, _Traits>* internalBuf_; /** internal stream buffer */ |
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bool isRead; /** file opened flag */ |
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}; |
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typedef basic_istringstream<char, char_traits<char>, allocator<char> > ifstringstream; |
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typedef basic_ifstrstream<char, std::char_traits<char>, std::allocator<char> > ifstrstream; |
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}//namespace oopse |
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#endif //IO_IFSTRSTREAM_HPP |