--- trunk/OOPSE-2.0/src/math/RectMatrix.hpp	2004/10/25 22:46:19	1644
+++ trunk/OOPSE-2.0/src/math/RectMatrix.hpp	2005/01/12 22:41:40	1930
@@ -1,29 +1,44 @@
-/*
- * Copyright (C) 2000-2004  Object Oriented Parallel Simulation Engine (OOPSE) project
- * 
- * Contact: oopse@oopse.org
- * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public License
- * as published by the Free Software Foundation; either version 2.1
- * of the License, or (at your option) any later version.
- * All we ask is that proper credit is given for our work, which includes
- * - but is not limited to - adding the above copyright notice to the beginning
- * of your source code files, and to any copyright notice that you may distribute
- * with programs based on this work.
- * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
+ /*
+ * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
  *
+ * The University of Notre Dame grants you ("Licensee") a
+ * non-exclusive, royalty free, license to use, modify and
+ * redistribute this software in source and binary code form, provided
+ * that the following conditions are met:
+ *
+ * 1. Acknowledgement of the program authors must be made in any
+ *    publication of scientific results based in part on use of the
+ *    program.  An acceptable form of acknowledgement is citation of
+ *    the article in which the program was described (Matthew
+ *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
+ *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
+ *    Parallel Simulation Engine for Molecular Dynamics,"
+ *    J. Comput. Chem. 26, pp. 252-271 (2005))
+ *
+ * 2. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ *
+ * 3. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the
+ *    distribution.
+ *
+ * This software is provided "AS IS," without a warranty of any
+ * kind. All express or implied conditions, representations and
+ * warranties, including any implied warranty of merchantability,
+ * fitness for a particular purpose or non-infringement, are hereby
+ * excluded.  The University of Notre Dame and its licensors shall not
+ * be liable for any damages suffered by licensee as a result of
+ * using, modifying or distributing the software or its
+ * derivatives. In no event will the University of Notre Dame or its
+ * licensors be liable for any lost revenue, profit or data, or for
+ * direct, indirect, special, consequential, incidental or punitive
+ * damages, however caused and regardless of the theory of liability,
+ * arising out of the use of or inability to use software, even if the
+ * University of Notre Dame has been advised of the possibility of
+ * such damages.
  */
-
-
+ 
 /**
  * @file RectMatrix.hpp
  * @author Teng Lin
@@ -92,7 +107,7 @@ namespace oopse {
              * Return the reference of a single element of this matrix.
              * @return the reference of a single element of this matrix 
              * @param i row index
-             * @param j colum index
+             * @param j Column index
              */
             Real& operator()(unsigned int i, unsigned int j) {
                 //assert( i < Row && j < Col);
@@ -103,7 +118,7 @@ namespace oopse {
              * Return the value of a single element of this matrix.
              * @return the value of a single element of this matrix 
              * @param i row index
-             * @param j colum index
+             * @param j Column index
              */        
             Real operator()(unsigned int i, unsigned int j) const  {
                 
@@ -158,7 +173,7 @@ namespace oopse {
              * @return a column of  this matrix as a vector 
              * @param col the column index
              */                
-            Vector<Real, Col> getColum(unsigned int col) {
+            Vector<Real, Col> getColumn(unsigned int col) {
                 Vector<Real, Col> v;
 
                 for (unsigned int j = 0; j < Col; j++)
@@ -172,7 +187,7 @@ namespace oopse {
              * @param col the column index
              * @param v the vector to be set
              */                
-             void setColum(unsigned int col, const Vector<Real, Col>& v){
+             void setColumn(unsigned int col, const Vector<Real, Col>& v){
 
                 for (unsigned int j = 0; j < Col; j++)
                     data_[j][col] = v[j];
@@ -191,11 +206,11 @@ namespace oopse {
             }
 
            /**
-             * swap two colums of this matrix
-             * @param i the first colum
-             * @param j the second colum
+             * swap two Columns of this matrix
+             * @param i the first Column
+             * @param j the second Column
              */
-            void swapColum(unsigned int i, unsigned int j){
+            void swapColumn(unsigned int i, unsigned int j){
                     assert(i < Col && j < Col);
                     
                     for (unsigned int k = 0; k < Row; k++)
@@ -365,7 +380,7 @@ namespace oopse {
             }
 
             /** Return the transpose of this matrix */
-            RectMatrix<Real,  Col, Row> transpose(){
+            RectMatrix<Real,  Col, Row> transpose() const{
                 RectMatrix<Real,  Col, Row> result;
                 
                 for (unsigned int i = 0; i < Row; i++)