--- trunk/OOPSE-2.0/src/types/DirectionalAtomType.hpp 2004/10/26 22:25:19 1652 +++ trunk/OOPSE-2.0/src/types/DirectionalAtomType.hpp 2005/01/12 22:41:40 1930 @@ -1,3 +1,44 @@ + /* + * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. + * + * The University of Notre Dame grants you ("Licensee") a + * non-exclusive, royalty free, license to use, modify and + * redistribute this software in source and binary code form, provided + * that the following conditions are met: + * + * 1. Acknowledgement of the program authors must be made in any + * publication of scientific results based in part on use of the + * program. An acceptable form of acknowledgement is citation of + * the article in which the program was described (Matthew + * A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher + * J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented + * Parallel Simulation Engine for Molecular Dynamics," + * J. Comput. Chem. 26, pp. 252-271 (2005)) + * + * 2. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * + * 3. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the + * distribution. + * + * This software is provided "AS IS," without a warranty of any + * kind. All express or implied conditions, representations and + * warranties, including any implied warranty of merchantability, + * fitness for a particular purpose or non-infringement, are hereby + * excluded. The University of Notre Dame and its licensors shall not + * be liable for any damages suffered by licensee as a result of + * using, modifying or distributing the software or its + * derivatives. In no event will the University of Notre Dame or its + * licensors be liable for any lost revenue, profit or data, or for + * direct, indirect, special, consequential, incidental or punitive + * damages, however caused and regardless of the theory of liability, + * arising out of the use of or inability to use software, even if the + * University of Notre Dame has been advised of the possibility of + * such damages. + */ + #ifndef TYPES_DIRECTIONALATOMTYPE_HPP #define TYPES_DIRECTIONALATOMTYPE_HPP @@ -5,34 +46,63 @@ namespace oopse { #include "math/SquareMatrix3.hpp" namespace oopse { - /** - * @class DirectionalAtomType - * - * DirectionalAtomType is what OOPSE looks to for unchanging data - * about a directional atoms. - */ - class DirectionalAtomType : public AtomType { - - public: - - DirectionalAtomType() : AtomType() { atp.is_Directional = 1; } - Mat3x3d getI() {return I;} - void setI(Mat3x3d theI) {I = theI;} +/** + * @class DirectionalAtomType + * + * DirectionalAtomType is what OOPSE looks to for unchanging data + * about a directional atoms. + */ +class DirectionalAtomType : public AtomType { - void setDipole() { atp.is_Dipole = 1; atp.is_Electrostatic = 1; } + public: - void setGayBerne() { atp.is_GayBerne = 1; } + DirectionalAtomType() : AtomType() { atp.is_Directional = 1; } - void setSticky() { atp.is_Sticky = 1; } + Mat3x3d getI() {return I;} - void setShape() { atp.is_Shape = 1;} + void setI(Mat3x3d theI) {I = theI;} - - private: - - Mat3x3d I; - - }; + RotMat3x3d getElectroBodyFrame() { + return electroBodyFrame_; + } + + void setElectroBodyFrame(const RotMat3x3d& electroBodyFrame) { + electroBodyFrame_ =electroBodyFrame; + } + + void setDipole() { atp.is_Dipole = 1; } + + void setQuadrupole() { atp.is_Quadrupole = 1; } + + void setGayBerne() { atp.is_GayBerne = 1; } + + void setSticky() { atp.is_Sticky = 1; } + + void setShape() { atp.is_Shape = 1;} + + virtual void complete(); + + private: + + Mat3x3d I; + RotMat3x3d electroBodyFrame_; +}; + + +struct StickyParam { +double w0; +double v0; +double v0p; +double rl; +double ru; +double rlp; +double rup; +}; + +typedef SimpleTypeData StickyParamGenericData; + +typedef SimpleTypeData Vector3dGenericData; + } #endif