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Comparing trunk/OOPSE-2.0/src/utils/next_combination.hpp (file contents):
Revision 1676 by tim, Thu Oct 28 20:01:39 2004 UTC vs.
Revision 2204 by gezelter, Fri Apr 15 22:04:00 2005 UTC

# Line 1 | Line 1
1   /*
2 < * Copyright (C) 2000-2004  Object Oriented Parallel Simulation Engine (OOPSE) project
3 < *
4 < * Contact: oopse@oopse.org
5 < *
6 < * This program is free software; you can redistribute it and/or
7 < * modify it under the terms of the GNU Lesser General Public License
8 < * as published by the Free Software Foundation; either version 2.1
9 < * of the License, or (at your option) any later version.
10 < * All we ask is that proper credit is given for our work, which includes
11 < * - but is not limited to - adding the above copyright notice to the beginning
12 < * of your source code files, and to any copyright notice that you may distribute
13 < * with programs based on this work.
14 < *
15 < * This program is distributed in the hope that it will be useful,
16 < * but WITHOUT ANY WARRANTY; without even the implied warranty of
17 < * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
18 < * GNU Lesser General Public License for more details.
19 < *
20 < * You should have received a copy of the GNU Lesser General Public License
21 < * along with this program; if not, write to the Free Software
22 < * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
2 > * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3   *
4 + * The University of Notre Dame grants you ("Licensee") a
5 + * non-exclusive, royalty free, license to use, modify and
6 + * redistribute this software in source and binary code form, provided
7 + * that the following conditions are met:
8 + *
9 + * 1. Acknowledgement of the program authors must be made in any
10 + *    publication of scientific results based in part on use of the
11 + *    program.  An acceptable form of acknowledgement is citation of
12 + *    the article in which the program was described (Matthew
13 + *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14 + *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15 + *    Parallel Simulation Engine for Molecular Dynamics,"
16 + *    J. Comput. Chem. 26, pp. 252-271 (2005))
17 + *
18 + * 2. Redistributions of source code must retain the above copyright
19 + *    notice, this list of conditions and the following disclaimer.
20 + *
21 + * 3. Redistributions in binary form must reproduce the above copyright
22 + *    notice, this list of conditions and the following disclaimer in the
23 + *    documentation and/or other materials provided with the
24 + *    distribution.
25 + *
26 + * This software is provided "AS IS," without a warranty of any
27 + * kind. All express or implied conditions, representations and
28 + * warranties, including any implied warranty of merchantability,
29 + * fitness for a particular purpose or non-infringement, are hereby
30 + * excluded.  The University of Notre Dame and its licensors shall not
31 + * be liable for any damages suffered by licensee as a result of
32 + * using, modifying or distributing the software or its
33 + * derivatives. In no event will the University of Notre Dame or its
34 + * licensors be liable for any lost revenue, profit or data, or for
35 + * direct, indirect, special, consequential, incidental or punitive
36 + * damages, however caused and regardless of the theory of liability,
37 + * arising out of the use of or inability to use software, even if the
38 + * University of Notre Dame has been advised of the possibility of
39 + * such damages.
40   */
41 <
41 >
42   /**
43 < * @file GenerateCombination.hpp
43 > * @file next_combination.hpp
44   * @author    tlin
45   * @date  10/27/2004
46   * @version 1.0
# Line 35 | Line 51
51  
52   #include <vector>
53   #include <iterator>
54 <
54 > #include <iostream>
55   namespace oopse {
56  
57 < /**
58 < * @fn bool next_combination(IteratorContainer<RandomAccessIterator>& iterContainer, RandomAccessIterator first, RandomAccessIterator last)
59 < * @brief STL next_permuationtation like combination sequence generator.
60 < * Given the first and last iterator of a sequence, next_combination iteratively generates all possible combination.
61 < * @param iterContainer iterator container
62 < * @param first the first iterator
63 < * @param last the last iterator
64 < * @note first and last must be random access iterators and iterContainer must be the container which
65 < * element is iterator. And all of the iteratos in iterContainer must be within the range [first, last)
66 < *
67 < * @code
68 < * std::vector<int> iv;
69 < * iv.push_back(1);
70 < * iv.push_back(8);
71 < * std::vector<std::vector<int>::iterator> ic;
72 < * while(next_combination(ic, iv.begin(), iv.end())) {
73 < *     for (i =  ic.begin(); i < ic.end(); ++i) {
74 < *         std::cout << **i << "\t";
75 < *     }
76 < *     std::cout << std::endl;
77 < * }
78 < * //output
79 < * //1
80 < * //8
81 < * //1  8
82 < */
83 < template<class RandomAccessIterator, template<typename ELEM, typename = std::allocator<ELEM> > class IteratorContainer>
84 < bool next_combination(IteratorContainer<RandomAccessIterator>& iterContainer, RandomAccessIterator first, RandomAccessIterator last) {
57 >  /**
58 >   * @brief STL next_permuationtation like combination sequence generator.
59 >   * Given the first and last iterator of a sequence, next_combination iteratively generates all
60 >   * possible combinations.
61 >   * @return if more combination is availiable, otherwise return false
62 >   * @param iterContainer iterator container
63 >   * @param first the first iterator
64 >   * @param last the last iterator
65 >   * @note first and last must be random access iterators and iterContainer must be the container of  
66 >   * random access iterators . And all of the iteratos in iterContainer must be within the range [first, last)
67 >   *
68 >   * @code
69 >   * std::vector<int> iv;
70 >   * iv.push_back(1);
71 >   * iv.push_back(8);
72 >   * std::vector<std::vector<int>::iterator> ic;
73 >   * while(next_combination(ic, iv.begin(), iv.end())) {
74 >   *     for (i =  ic.begin(); i < ic.end(); ++i) {
75 >   *         std::cout << **i << "\t";
76 >   *     }
77 >   *     std::cout << std::endl;
78 >   * }
79 >   * //output
80 >   * //1
81 >   * //8
82 >   * //1  8
83 >   * @endcode
84 >   */
85 >  template<class RandomAccessIterator>
86 >  bool next_combination(std::vector<RandomAccessIterator>& iterContainer, RandomAccessIterator first, RandomAccessIterator last) {
87      if (first == last) {
88 <        return false;
88 >      return false;
89      }
90      
91      RandomAccessIterator endIter = --last;
92 <    typename IteratorContainer<RandomAccessIterator>::iterator i = iterContainer.end();
92 >    typename std::vector<RandomAccessIterator>::iterator i = iterContainer.end();
93      
94      if (iterContainer.empty()) {
95 <        //if sequence is empty, we insert the first iterator
96 <        iterContainer.insert(iterContainer.end(), first);
97 <        return true;
95 >      //if sequence is empty, we insert the first iterator
96 >      iterContainer.insert(iterContainer.end(), first);
97 >      return true;
98      } else if (*(--i) != endIter){
99 <        //if the last iterator in iterContainer does not reaches the end, just increment it
100 <        ++(*i);
101 <        return true;
99 >      //if the last iterator in iterContainer does not reaches the end, just increase its iterator by 1
100 >      ++(*i);
101 >      return true;
102      } else {// the last iterator in iterContainer does not reaches the end
103  
104 <        //starts at the end of the sequence and works its way towards the front, looking for two
105 <        //consecutive members of the sequence where the difference between them is greater
106 <        //than one. For example , if the sequence contains 1, 5, 8, 9 (total number is 10, begin
107 <        //index is 0, therefore 9 is the end index, and the current size is 4). At the end of while
108 <        //loop, j will point to 5, and i will point to 8, next combination should be 1, 6, 7, 8.
109 <        //If j is less than zero, it means it already reaches the last combination of current size.
110 <        //For instance, sequence may contain 6, 7, 8, 9 at this time, we need to increase the size
111 <        // of combination to 5
112 <        typename IteratorContainer<RandomAccessIterator>::iterator j = i;
113 <        j--;
114 <        while( j >= iterContainer.begin() && *i == *j + 1){
115 <            i--;
116 <            j--;
117 <        };
104 >      //starts at the end of the sequence and works its way towards the front, looking for two
105 >      //consecutive members of the sequence where the difference between them is greater
106 >      //than one. For example , if the sequence contains 1, 5, 8, 9 (total number is 10, first is 0
107 >      //and the last is 10 (due to STL's half open range)). At the end of while
108 >      //loop, j will point to 5, and i will point to 8, next combination should be 1, 6, 7, 8.
109 >      //If j is less than zero, it means it already reaches the last combination of current size.
110 >      //For instance, sequence may contain 6, 7, 8, 9 at this time, we need to increase the size
111 >      // of combination to 5
112 >      typename std::vector<RandomAccessIterator>::iterator j = i;
113 >      j--;
114 >      while( j >= iterContainer.begin() && *i == *j + 1){
115 >        i--;
116 >        j--;
117 >      };
118  
119 <        RandomAccessIterator raIter;
120 <        if (j - iterContainer.begin() < 0) { //reaches the last combination of current size
121 <            //half open range
122 <            if (last  - first + 1  == iterContainer.size()) {
123 <                //if the current size equals to total number, done
124 <                return false;
125 <            } else {
119 >      RandomAccessIterator raIter;
120 >      if (j - iterContainer.begin() < 0) { //reaches the last combination of current size
121 >        //half open range
122 >        if (last  - first + 1  == iterContainer.size()) {
123 >          //if the current size equals to total number, done
124 >          return false;
125 >        } else {
126  
127 <                //push the first currentSize+1 element into sequence
127 >          //push the first currentSize+1 element into sequence
128                  
129 <                for(i = iterContainer.begin(), raIter= first; i  != iterContainer.end(); ++i, ++raIter) {
130 <                    *i = raIter;
131 <                }    
132 <                iterContainer.insert(iterContainer.end(), raIter);
129 >          for(i = iterContainer.begin(), raIter= first; i  != iterContainer.end(); ++i, ++raIter) {
130 >            *i = raIter;
131 >          }    
132 >          iterContainer.insert(iterContainer.end(), raIter);
133                  
134 <                return true;
135 <            }
134 >          return true;
135 >        }
136              
137 <        } else {
138 <            ++(*j);
139 <            raIter = *j;
140 <            for(; i != iterContainer.end(); ++i) {
141 <                ++raIter;
142 <                *i = raIter;
143 <            }
144 <            return true;
145 <        }
137 >      } else {
138 >        ++(*j);
139 >        raIter = *j;
140 >        for(; i != iterContainer.end(); ++i) {
141 >          ++raIter;
142 >          *i = raIter;
143 >        }
144 >        return true;
145 >      }
146      }
147 < } //end next_combination
147 >  } //end next_combination
148  
131 – bool replaceWildCard(std::vector<std::vector<std::string>::iterator>& cont,
132 –                                             std::vector<std::string> sequence, std::vector<std::string> result
133 –                                             std::string& wildCard = "X") {
134 –    if (cont.size() > sequnce.size()) {
135 –        std::cerr << "the size of iterator container is greater than the size of sequence"
136 –    }
137 –
138 –    bool hasMoreCombination = next_combination(cont, sequence.begin(), sequence.end());
139 –    if (hasMoreCombination) {
140 –        result.resize(sequence.size());
141 –        result.insert(result.end(), sequence.size(), wildCard);
142 –        for ( i = cont.begin(); i != cont.end(); i++){
143 –            result[*i - sequence.begin()] = **i;
144 –    }
145 –
146 –     return hasMoreCombination;
147 – }
148 –
149   } //end namespace oopse
150   #endif //UTILS_NEXT_COMBINATION_HPP
151  

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