--- trunk/OOPSE-2.0/src/visitors/AtomVisitor.hpp	2004/11/05 21:45:14	1718
+++ trunk/OOPSE-2.0/src/visitors/AtomVisitor.hpp	2005/01/12 22:41:40	1930
@@ -1,47 +1,93 @@
-#ifndef _BASEATOMVISITOR_H_
-#define _BASEATOMVISITOR_H_
+ /*
+ * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
+ *
+ * The University of Notre Dame grants you ("Licensee") a
+ * non-exclusive, royalty free, license to use, modify and
+ * redistribute this software in source and binary code form, provided
+ * that the following conditions are met:
+ *
+ * 1. Acknowledgement of the program authors must be made in any
+ *    publication of scientific results based in part on use of the
+ *    program.  An acceptable form of acknowledgement is citation of
+ *    the article in which the program was described (Matthew
+ *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
+ *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
+ *    Parallel Simulation Engine for Molecular Dynamics,"
+ *    J. Comput. Chem. 26, pp. 252-271 (2005))
+ *
+ * 2. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ *
+ * 3. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the
+ *    distribution.
+ *
+ * This software is provided "AS IS," without a warranty of any
+ * kind. All express or implied conditions, representations and
+ * warranties, including any implied warranty of merchantability,
+ * fitness for a particular purpose or non-infringement, are hereby
+ * excluded.  The University of Notre Dame and its licensors shall not
+ * be liable for any damages suffered by licensee as a result of
+ * using, modifying or distributing the software or its
+ * derivatives. In no event will the University of Notre Dame or its
+ * licensors be liable for any lost revenue, profit or data, or for
+ * direct, indirect, special, consequential, incidental or punitive
+ * damages, however caused and regardless of the theory of liability,
+ * arising out of the use of or inability to use software, even if the
+ * University of Notre Dame has been advised of the possibility of
+ * such damages.
+ */
+ 
+#ifndef VISITORS_BASEATOMVISITOR_HPP
+#define VISITORS_BASEATOMVISITOR_HPP
 
-
 #include <vector>
+
 #include "visitors/BaseVisitor.hpp"
 #include "visitors/AtomData.hpp"
 
-using namespace std;
-
 namespace oopse {
-    
+
+/**
+ * @class BaseAtomVisitor
+ * @todo document
+ */
 class BaseAtomVisitor : public BaseVisitor{
-  public:
-    virtual void visit(Atom* atom) {}
-    virtual void visit(DirectionalAtom* datom) {}
-    virtual void visit(RigidBody* rb);
-    void setVisited(Atom* atom);
-    bool isVisited(Atom* atom);
-    
-  protected:
-    BaseAtomVisitor(SimInfo* info) : BaseVisitor() {}    
-    SimInfo* info;
+    public:
+        virtual void visit(Atom* atom) {}
+        virtual void visit(DirectionalAtom* datom) {}
+        virtual void visit(RigidBody* rb);
+        void setVisited(Atom* atom);
+        bool isVisited(Atom* atom);
+
+    protected:
+        BaseAtomVisitor(SimInfo* info) : BaseVisitor() {}    
+        SimInfo* info;
 };
 
-
+/**
+ * @class SSDAtomVisitor
+ * @todo document
+ */
 class SSDAtomVisitor : public BaseAtomVisitor{
-  public:
-    SSDAtomVisitor(SimInfo* info) : BaseAtomVisitor(info) {
-      visitorName = "SSDAtomVisitor";
-      ssdAtomType.push_back("SSD");
-      ssdAtomType.push_back("SSD_E");
-      ssdAtomType.push_back("SSD_RF");
-      ssdAtomType.push_back("SSD1");
-    }
+        public:
+            SSDAtomVisitor(SimInfo* info) : BaseAtomVisitor(info) {
+                visitorName = "SSDAtomVisitor";
+                ssdAtomType.push_back("SSD");
+                ssdAtomType.push_back("SSD_E");
+                ssdAtomType.push_back("SSD_RF");
+                ssdAtomType.push_back("SSD1");
+            }
 
-    virtual void visit(Atom* atom) {}
-    virtual void visit(DirectionalAtom* datom);       
-    virtual void visit(RigidBody* rb) {}
-    
-    virtual const string toString();
-  private:
-    inline bool isSSDAtom(const string& atomType);
-    vector<string> ssdAtomType;   
+            virtual void visit(Atom* atom) {}
+            virtual void visit(DirectionalAtom* datom);       
+            virtual void visit(RigidBody* rb) {}
+
+            virtual const std::string toString();
+        private:
+            inline bool isSSDAtom(const std::string& atomType);
+            std::vector<std::string> ssdAtomType;   
 };
 
 class LinearAtomVisitor : public BaseAtomVisitor{
@@ -65,15 +111,15 @@ class DefaultAtomVisitor : public BaseAtomVisitor{
 
 
 class DefaultAtomVisitor : public BaseAtomVisitor{
-  public:
-    DefaultAtomVisitor(SimInfo* info) : BaseAtomVisitor(info) { visitorName = "DefaultAtomVisitor";}
+    public:
+        DefaultAtomVisitor(SimInfo* info) : BaseAtomVisitor(info) { visitorName = "DefaultAtomVisitor";}
 
-    virtual void visit(Atom* atom);    
-    virtual void visit(DirectionalAtom* datom);    
-    virtual void visit(RigidBody* rb) {}
-    
-    virtual const string toString();
-    
+        virtual void visit(Atom* atom);    
+        virtual void visit(DirectionalAtom* datom);    
+        virtual void visit(RigidBody* rb) {}
+
+        virtual const std::string toString();
+
 };
 
 }//namespace oopse